BAC Information

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BAC

Clone NameB6Ng01-292N24
Chromosome11 (Build37)
Map Location 24,943,237 - 24,944,393
singlet/doubletsinglet
Overlap genenone
Upstream geneA830031A19Rik, LOC100042256, Bcl11a, LOC100042282
Downstream gene5730522E02Rik, LOC100042328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292N24.bB6Ng01-292N24.g
ACCGA089400GA089401
length1,2151,157
definitionB6Ng01-292N24.b B6Ng01-292N24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagcacagagccccattttttaatgtggttatttgatt
ttctggagtccaccttcttgagttctttatatatatattagatattagtc
ccctatctgatttaggataggtaaagatcctttcccaatcttttggtggc
cattttgtcttattgacagtgtcctttgccttgcaaaagctttgcaattt
tatgaggtcccatttgtcaattcttgatcttacagcagaagccattgctg
ttctattcagggattttcccttgtgcccatatcttcgaggcttttcccta
ctttctcctctataagtttcagtgcctctggtcttatgtggagttccttg
atcaacttagatttgaccttagtaaaggatataggaatggatcaatttgc
attttttctacatgataaccaccagttgtaccagcaacacttgttgaaaa
ctcttgtcttttttccactggatggttttagctaccttgtcaaagatcaa
gtgaccataggtgtgtgggttcatttctgggtcttcaattctattccatt
ggtctacttgtctgtcactataccagtaccatgcagtttttatcacaatt
gctctgtagtacagctttaggtcaggcatggtgattccaccagaggttct
tttatcctcgagaagactttttcctatcctaggttttttgttattccaga
tgaatttgcagattgttctttctaattctttgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgcttttggcaagatagccat
ttttacaatgttgattctgctaatccatgagcatgggagatctttccatc
ttctgaaatcttctttaatttctttcttcagagacttgaagttcttatca
tacagatctttcactttcctttgttagagtccacgcccagggtattttat
atttattttgtgactattgagaagggtgtttttttccctaatttcctttt
ccagcctgtttattctttgtgtagaagaaagccatgacttggtttcaggt
tattttatatccagctacctggattggcttcagcctttctcgacattaac
ttggatgctgcctactggttggcgtgtagattgcttaatcaatgtttagc
atggtctgatctgaaccttcaaagcattattcaagaaaatgggagcgtgc
tagcatactgctatt
gaattcctaaatatttgtataatgaagctgtacactacatttcataatgc
aatagaatttgtccttgttatcttgatcagagagagaaaaacactatttc
tgctctcccaagcttggctccccttagctgtctatatctttctttcccct
ctttctgatattggccctttctgctcccaagcttgcctttatctccttga
ttcgggggttccttgtttcttgtttcaggatgtgcttgtgcactgatgtt
tcttctgtgatctgaatgcgtcctctaattcagtctcttccaccacaggc
ctggaaggaaagtgagaccgattaggtgcttcatctcagcctggttcact
atgtaccctgctctgattagatgactgtggtgggaccacaccgtgtccct
ctagctccatacaacaccactgtctctaggtcatagactcctgcctagtc
ctcaaagcttttgaaatacaaatggcagttctgtttgctattggtgagac
caaggctggtcccatctgaggcactgtgaagtcattaaaattcttcagtc
agatctttgtatgtgcaatcaatgtatagattccttctgacatagactga
cgttttagtacacaagggaacattggtaaaaaacaagctggtttattaat
taaagtgataataaataattcgcctaaacttcaatatgtttagtgcaaac
ttcagctcagtcagccgtactctgaacctatttttaaatcatggacttcc
tttgtgctttttctagcatgaagacaaattgaatcgagaaagacccattt
ttatcacagagtaacttaaatcctaatttggtagttgcccttcaaaacta
aagtctatgggttattatttcaatatggttttccaaaaaaaactatttca
atggcgacatcaaggaggagacaaagacaagaaatgtccaaacataagat
tctgccagcagaagtcagtttaaaatctcattcatcagagcctactgtct
tgtgaaatcgtcgccctaaaaactgtgtatacactgcagggcatccctgt
gagctggtgtctcagctctcatcagaaatacgtgctctgtctggacaaat
tttgtggggtgttgctgtgacctccgaactttgagactctggaattttga
catatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24943237_24944393
seq2: B6Ng01-292N24.g_66_1222

seq1  GAATTCCTAAATATTTGTATAATGAAGCTGTACACTACATTTCATAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATATTTGTATAATGAAGCTGTACACTACATTTCATAATGC  50

seq1  AATAGAATTTGTCCTTGTTATCTTGATCAGAGAGAGAAAAACACTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTTGTCCTTGTTATCTTGATCAGAGAGAGAAAAACACTATTTC  100

seq1  TGCTCTCCCAAGCTTGGCTCCCCTTAGCTGTCTATATCTTTCTTTCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCCAAGCTTGGCTCCCCTTAGCTGTCTATATCTTTCTTTCCCCT  150

seq1  CTTTCTGATATTGGCCCTTTCTGCTCCCAAGCTTGCCTTTATCTCCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGATATTGGCCCTTTCTGCTCCCAAGCTTGCCTTTATCTCCTTGA  200

seq1  TTCGGGGGTTCCTTGTTTCTTGTTTCAGGATGTGCTTGTGCACTGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGGGTTCCTTGTTTCTTGTTTCAGGATGTGCTTGTGCACTGATGTT  250

seq1  TCTTCTGTGATCTGAATGCGTCCTCTAATTCAGTCTCTTCCACCACAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTGATCTGAATGCGTCCTCTAATTCAGTCTCTTCCACCACAGGC  300

seq1  CTGGAAGGAAAGTGAGACCGATTAGGTGCTTCATCTCAGCCTGGTTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGAAAGTGAGACCGATTAGGTGCTTCATCTCAGCCTGGTTCACT  350

seq1  ATGTACCCTGCTCTGATTAGATGACTGTGGTGGGACCACACCGTGTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCCTGCTCTGATTAGATGACTGTGGTGGGACCACACCGTGTCCCT  400

seq1  CTAGCTCCATACAACACCACTGTCTCTAGGTCATAGACTCCTGCCTAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCATACAACACCACTGTCTCTAGGTCATAGACTCCTGCCTAGTC  450

seq1  CTCAAAGCTTTTGAAATACAAATGGCAGTTCTGTTTGCTATTGGTGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCTTTTGAAATACAAATGGCAGTTCTGTTTGCTATTGGTGAGAC  500

seq1  CAAGGCTGGTCCCATCTGAGGCACTGTGAAGTCATTAAAATTCTTCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGTCCCATCTGAGGCACTGTGAAGTCATTAAAATTCTTCAGTC  550

seq1  AGATCTTTGTATGTGCAATCAATGTATAGATTCCTTCTGACATAGACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTGTATGTGCAATCAATGTATAGATTCCTTCTGACATAGACTGA  600

seq1  CGTTTTAGTACACAAGGGAACATTGGTAAAAAACAAGCTGGTTTATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTAGTACACAAGGGAACATTGGTAAAAAACAAGCTGGTTTATTAAT  650

seq1  TAAAGTGATAATAAATAATTCGCCTAAACTTCAATATGTTTAGTGCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGATAATAAATAATTCGCCTAAACTTCAATATGTTTAGTGCAAAC  700

seq1  TTCAGCTCAGTCAGCCGTACTCTGAACCTATTTTTAAATCATGGACTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCAGTCAGCCGTACTCTGAACCTATTTTTAAATCATGGACTTCC  750

seq1  TTTGTGCTTTTTCTAGCATGAAGACAAATTGAATCGAGAAAGACCCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTTTTTCTAGCATGAAGACAAATTGAATCGAGAAAGACCCATTT  800

seq1  TTATCACAGAGTAACTTAAATCCTAATTTGGTAGTTGCCCTTCAAAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAGAGTAACTTAAATCCTAATTTGGTAGTTGCCCTTCAAAACTA  850

seq1  AAGTCTATGGGTTATTATTTCAATATGGTTTTCCAAAAAAAACTATTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTATGGGTTATTATTTCAATATGGTTTTCCAAAAAAAACTATTTCA  900

seq1  ATGGCGACATCAAGGAGGAGACAAAGACAAGAAATGTCCAAAACATAAGA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGGCGACATCAAGGAGGAGACAAAGACAAGAAATGTCC-AAACATAAGA  949

seq1  TTCTGCCAGCAGAAGTCAGTTTAAAATCTCATTCATCAGAGCCTACCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCTGCCAGCAGAAGTCAGTTTAAAATCTCATTCATCAGAGCCTA-CTGT  998

seq1  CTTGTGGAAACCGTCGCCCTAAAAACTGTTGGTATTAACACTGCAGGGCA  1050
      ||||| |||| ||||||||||||||||||  ||||  |||||||||||||
seq2  CTTGT-GAAATCGTCGCCCTAAAAACTGT--GTAT--ACACTGCAGGGCA  1043

seq1  T-CCTGTGAGCTGGTGTCTCAGCTCCTCATCCAGAATACGTGCTCTGTCT  1099
      | |||||||||||||||||||||| ||||||   ||||||||||||||||
seq2  TCCCTGTGAGCTGGTGTCTCAGCT-CTCATCAGAAATACGTGCTCTGTCT  1092

seq1  -GACAAA-TTTGT-GGGTGTTGCTGTG-CCTTCCAGATATGAG-TTCTGG  1144
       |||||| ||||| ||||||||||||| ||| | |  | ||||  |||||
seq2  GGACAAATTTTGTGGGGTGTTGCTGTGACCTCCGAACTTTGAGACTCTGG  1142

seq1  --TTTTGACATATGG  1157
        |||||||||||||
seq2  AATTTTGACATATGG  1157