BAC Information

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BAC

Clone NameB6Ng01-293C07
Chromosome11 (Build37)
Map Location 101,931,453 - 102,067,812
singlet/doubletdoublet
Overlap geneMpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5
Upstream geneNaglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg
Downstream geneBC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293C07.bB6Ng01-293C07.g
ACCGA089596GA089597
length387892
definitionB6Ng01-293C07.b B6Ng01-293C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,931,453 - 101,931,845)(102,066,924 - 102,067,812)
sequence
attaatctttcatgcatctgaattttgaggttgggaggggtagttcccat
acgtaggtctgtttcttgttttgttttgttttgttttcctaggatgcata
gtttcacactttgatctctgatctgctcgaagtttattctgatgtatggt
gtgaattgtggatctactttgatactttcaaaaatgaccgtcaagattcc
ttaatgctatttattagaactacaccgtaggaggctggggagatggctgt
cagtaaagtttctactgcgcaagcatgaggacctgaattcagatgcccaa
aactaaatgttaaaaggtggaagtggagagtgtgcctgtgatgctagcac
acacggggcggaagggtgggctggggtgggggtaggg
gaattcctgttgtccaagtcaaaggagcccacgccaggcggcctcaacca
ttccctcccacagcaccccaaatgctggtaatggctctgggggacaaggg
tggacagaagggtcctgctcaggttgcctggttatgggaacagcttgggg
aaccctgccttgcaaccacagttctgcagtctattctaggggggagctcc
ccaccccacttctcttcttcgccttctcagggtccatgtttctctctgta
atgtccaaccttagctccctgaggggtttccactcatgtggcccttccat
agctctactgtgctgtgctgggtgtggtagcatatgtctatagttgtaga
actcaggaggtagaggcagaatggatacaggttcaagtactagcctgggt
tacatagcaagtctgaggccagcctggactacatgagaccttgtttcaaa
aaatccaaaatataaaaacaaaacctcccaagccaaacaactagctatca
ggtggcaggtcggggtggggggcgggtaagtggtcagggggtccatagta
acctagacctgcttccaccccaccccaggggagcccaccacgcttctttg
gaccagagtttcccctccccagagcggccctcctgggacgcctccctcct
acaaattgcctttgctttgggccctatgacagccgtgatgactttcccct
ccgtaaaacgggtacgtgagtcttggctccccaggaataaggcgtctagg
gtagaggttgggccatgtgcaaagggcatgcgctgctgctgctcaaggtt
gccctggaccagctgggctgggcttcagtttctatttagataattcctga
gtccctccattctctctctaccttcgaacccaatttaaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101931453_101931845
seq2: B6Ng01-293C07.b_48_440

seq1  GAATTCATTAATCTTTCATGCATCTGAATTTTGAGGTTGGGAGGGGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATCTTTCATGCATCTGAATTTTGAGGTTGGGAGGGGTAGT  50

seq1  TCCCATACGTAGGTCTGTTTCTTGTTTTGTTTTGTTTTGTTTTCCTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATACGTAGGTCTGTTTCTTGTTTTGTTTTGTTTTGTTTTCCTAGGA  100

seq1  TGCATAGTTTCACACTTTGATCTCTGATCTGCTCGAAGTTTATTCTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGTTTCACACTTTGATCTCTGATCTGCTCGAAGTTTATTCTGATG  150

seq1  TATGGTGTGAATTGTGGATCTACTTTGATACTTTCAAAAATGACCGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGTGAATTGTGGATCTACTTTGATACTTTCAAAAATGACCGTCAA  200

seq1  GATTCCTTAATGCTATTTATTAGAACTACACCGTAGGAGGCTGGGGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTAATGCTATTTATTAGAACTACACCGTAGGAGGCTGGGGAGAT  250

seq1  GGCTGTCAGTAAAGTTTCTACTGCGCAAGCATGAGGACCTGAATTCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCAGTAAAGTTTCTACTGCGCAAGCATGAGGACCTGAATTCAGAT  300

seq1  GCCCAAAACTAAATGTTAAAAGGTGGAAGTGGAGAGTGTGCCTGTGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAACTAAATGTTAAAAGGTGGAAGTGGAGAGTGTGCCTGTGATGC  350

seq1  TAGCACACACGGGGCGGAAGGGTGGGCTGGGGTGGGGGTAGGG  393
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACACGGGGCGGAAGGGTGGGCTGGGGTGGGGGTAGGG  393

seq1: chr11_102066924_102067812
seq2: B6Ng01-293C07.g_68_959 (reverse)

seq1  ACTTTTAAGTTGGGTTCCGAGGCTAGAGAGAGAGTGGTGGGGCTCAGGAT  50
      |||||||| ||||||| ||| | |||||||||| ||| ||| ||||||| 
seq2  ACTTTTAAATTGGGTT-CGAAGGTAGAGAGAGAATGGAGGGACTCAGGAA  49

seq1  TTATCTACACAGAAACCTGAAGCCCAGCCCAGCCTGGTCCAGGGCAACCC  100
      ||||||| | ||||| |||||||||||||||| |||||||||||||||| 
seq2  TTATCTAAATAGAAA-CTGAAGCCCAGCCCAG-CTGGTCCAGGGCAACCT  97

seq1  TGAGCAGCAGCAGCGC-TGCCCTTTGCACATG--CCCACCTCTACCCTAG  147
      |||||||||||||||| |||||||||||||||  || |||||||||||||
seq2  TGAGCAGCAGCAGCGCATGCCCTTTGCACATGGCCCAACCTCTACCCTAG  147

seq1  ACGCCTTATTCCT-GGGAGCCAAGACTCACGTACCCGTTTTACGGAGGGG  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTATTCCTGGGGAGCCAAGACTCACGTACCCGTTTTACGGAGGGG  197

seq1  AAAGTCATCACGGCTGTCATAGGGCCC-AAGCAAAGGCAATTTGTAGGAG  245
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAGTCATCACGGCTGTCATAGGGCCCAAAGCAAAGGCAATTTGTAGGAG  247

seq1  GGAGGCGTCCCAGGAGGGCCGCTCTGGGGAGGGG-AACTCTGGTCCAAAG  294
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGAGGCGTCCCAGGAGGGCCGCTCTGGGGAGGGGAAACTCTGGTCCAAAG  297

seq1  AAGCGTGGTGGGCTCCCCTGGGGTGGGGTGGAAGCAGGTCTAGGTTACTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTGGTGGGCTCCCCTGGGGTGGGGTGGAAGCAGGTCTAGGTTACTA  347

seq1  TGGACCCCCTGACCACTTACCCGCCCCCCACCCCGACCTGCCACCTGATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCCTGACCACTTACCCGCCCCCCACCCCGACCTGCCACCTGATA  397

seq1  GCTAGTTGTTTGGCTTGGGAGGTTTTGTTTTTATATTTTGGATTTTTTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTGTTTGGCTTGGGAGGTTTTGTTTTTATATTTTGGATTTTTTGA  447

seq1  AACAAGGTCTCATGTAGTCCAGGCTGGCCTCAGACTTGCTATGTAACCCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTCTCATGTAGTCCAGGCTGGCCTCAGACTTGCTATGTAACCCA  497

seq1  GGCTAGTACTTGAACCTGTATCCATTCTGCCTCTACCTCCTGAGTTCTAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTACTTGAACCTGTATCCATTCTGCCTCTACCTCCTGAGTTCTAC  547

seq1  AACTATAGACATATGCTACCACACCCAGCACAGCACAGTAGAGCTATGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAGACATATGCTACCACACCCAGCACAGCACAGTAGAGCTATGGA  597

seq1  AGGGCCACATGAGTGGAAACCCCTCAGGGAGCTAAGGTTGGACATTACAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCACATGAGTGGAAACCCCTCAGGGAGCTAAGGTTGGACATTACAG  647

seq1  AGAGAAACATGGACCCTGAGAAGGCGAAGAAGAGAAGTGGGGTGGGGAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACATGGACCCTGAGAAGGCGAAGAAGAGAAGTGGGGTGGGGAGC  697

seq1  TCCCCCCTAGAATAGACTGCAGAACTGTGGTTGCAAGGCAGGGTTCCCCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTAGAATAGACTGCAGAACTGTGGTTGCAAGGCAGGGTTCCCCA  747

seq1  AGCTGTTCCCATAACCAGGCAACCTGAGCAGGACCCTTCTGTCCACCCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCCCATAACCAGGCAACCTGAGCAGGACCCTTCTGTCCACCCTT  797

seq1  GTCCCCCAGAGCCATTACCAGCATTTGGGGTGCTGTGGGAGGGAATGGTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCAGAGCCATTACCAGCATTTGGGGTGCTGTGGGAGGGAATGGTT  847

seq1  GAGGCCGCCTGGCGTGGGCTCCTTTGACTTGGACAACAGGAATTC  889
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGCCTGGCGTGGGCTCCTTTGACTTGGACAACAGGAATTC  892