BAC Information

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BAC

Clone NameB6Ng01-293C10
Chromosome11 (Build37)
Map Location 106,801,882 - 106,930,477
singlet/doubletdoublet
Overlap geneLOC666873, Kpna2, 1810010H24Rik, Bptf
Upstream geneCyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2
Downstream geneLOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293C10.bB6Ng01-293C10.g
ACCGA089602GA089603
length1,1981,068
definitionB6Ng01-293C10.b B6Ng01-293C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,929,268 - 106,930,477)(106,801,882 - 106,802,935)
sequence
gaattccatttgaggataaaatattcattgaaattgagtaaattaatttc
agatgcatttttagtgttagtttaagaaagaaaagtatgttcagcaactt
tgcagtctgcaaaggaggagcacgagtcctggttcccttctcatccgagg
agcggatgcaggaccgtatatttctggtaatggatttcttctaaccttcc
ccagcactggtacattcatagtgtttgtggtgctcatgagcagtggttca
tgtttggaaaagccagcttgaacttcagaattctgttcaattggaaaagg
tctttcagagtgttttagtttgttttactctttgagaaaatataaacatt
ttcagatttttgttttgttttagcaaaaattaattcatcatgattttttc
aatactcctatcaaatttagtaacacagttactgattttgtttttctctg
tatttttcatgcagatacattatagactaatataaagatctttataagtt
gttgtcatatcaagtcttaagataaaatactttagatattatttctgtgg
cattggaaatgagtctcactgatttaaaattgttcagtgcacattatcct
gggagcccaaatgtgttactttaaagactgtaatgccagagtctgacgca
gcactaaggttgtagtcagtgccagaaacatctccttcagttttatagag
aggaagagaagaaagtgtgaaagagtgtgtgtgtgtttgtagttgatctg
ggtttttctttcaggtatagactacagacggtaaagtccttggctggagt
gagcctgatgttacggttgctgtgggccagtttgagatgggatgacatgg
cagccaaggctcctccaggaggagggtctacacggacaggtaagggaatt
gcattttaagtgtaaagctgtgggctaaggatgtagctttagttgctgaa
gtgcatacatatctcatgcatgaggactgtgttagggtcctagtgctgtg
tgtgtaacctgttaagttcaaggccatttagatttatataagctgagtag
cggaatgtagcgaacctggcagcacgggttaatatgccatctacttgagc
caagcagaagggtactaattaatgacttgcctgagctcaagcccagctga
aagcttttcaaataactaatgaattaaacaaccagagagaaacttgaa
gaattcatctcagctcattcagtgtttaaaacattggggatctgatgtcc
aaggaaagccgttgagcacagctgtgctgggttccagctggtgggcccat
tcagaaatctacagaccacgggtctgagcctgcacagtgggaagcctggc
ccagagcctttctgaatgtgggatctggttcctgtgaattctcataacaa
agggagtttgccaaagtaagcaagtccctccaaatacaggtgaaataata
gtcttgccaagcaaaccctcgcaacaggaaaacatacagagttagttcac
cctgtgttctcaaaaggcactttccatagccgcagaaagccatccatcca
tccagtcaggaatacggagggaactcctctcctgcaacgctgggcaggga
cactgtgtttctggataaactaaagtgagtgtccactccaaggacagagt
atccaaaaaagcaggtgttctttggttctccttggcttgttcttggaaag
agccacaggtatagacaccatgcaaggatatgaatgtagaaaatgtatag
gctgtagaagctagagggatggctcagaagtcaagaacgcctctgtggca
actgaccactgtctgtaacaccagttctaggacatctgacacactcttct
ggcctctacagggaccaggcatgcaggtggtacttagacatacatataca
tatacatatgtatgaaatatacgacataaaatgaggaactatcaactgta
ttgcttagtgttcactgtgaattctttggttgaaaggacgatttcttttc
tttttttttttaagatttatttatttattttgtgtatgtgagtacactgc
agctgtagagatgggttgtgagccttcatgtggttgttgggatttggaat
tttaaggacctctgctcactctggtcggactcggtagctccgacccaaag
attagtttattattattaggtaagtacactgtagctggtcttcagaacac
acccagaagtagggtgtaagaatcttcatttacggatgctgctgagccac
tcatgttggttgctggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106929268_106930477
seq2: B6Ng01-293C10.b_47_1244 (reverse)

seq1  TTCAAGTTTCT-TCT-GTTGTTTATTTCATT--TTATTTTATTTTGAGAC  46
      ||||||||||| ||| |||||||| ||||||  |||||| |       | 
seq2  TTCAAGTTTCTCTCTGGTTGTTTAATTCATTAGTTATTTGA-------AA  43

seq1  AGCTTTTCTAGCTGGCCTTGAGCTCAAGCAGGTCATTAATTAG-ATCCTC  95
      ||||||   |||||| |||||||||| ||| |||||||||||| | ||| 
seq2  AGCTTT--CAGCTGGGCTTGAGCTCAGGCAAGTCATTAATTAGTACCCTT  91

seq1  TTGCTTTGGCCTCCAAAGTAGATGGCATTATAAACCCGTGCTGCCAGGTC  145
       |||||  | |||  |||||||||||| ||| ||||||||||||||||| 
seq2  CTGCTT--GGCTC--AAGTAGATGGCA-TATTAACCCGTGCTGCCAGGT-  135

seq1  TGGCTACCTTTTCGGCTACTCAGCCTTATAT-AATCTAAATTGGCCTTGA  194
      | |||||   ||| ||||||||| ||||||| |||||||| |||||||||
seq2  TCGCTAC--ATTCCGCTACTCAG-CTTATATAAATCTAAA-TGGCCTTGA  181

seq1  ACTT-ACAGGTTACACACACAGCACTAGGA-CCTAACACAAGTCCTCATG  242
      |||| ||||||||||||||||||||||||| |||||||| ||||||||||
seq2  ACTTAACAGGTTACACACACAGCACTAGGACCCTAACAC-AGTCCTCATG  230

seq1  CATGAGATATGTATGCACTTCAGCAACT-AAGCTACATCCTTAGCCCACA  291
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATGAGATATGTATGCACTTCAGCAACTAAAGCTACATCCTTAGCCCACA  280

seq1  GCTTTTACACTTAAAATGCAATTCCCTTACCTGTCCGTGTAGACCCTCCT  341
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-TTTACACTTAAAATGCAATTCCCTTACCTGTCCGTGTAGACCCTCCT  329

seq1  CCTGGAGGAGCCTTGGCTGCCATGTCATCCCATCTCAAACTGGCCCACAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGAGCCTTGGCTGCCATGTCATCCCATCTCAAACTGGCCCACAG  379

seq1  CAACCGTAACATCAGGCTCACTCCAGCCAAGGACTTTACCGTCTGTAGTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGTAACATCAGGCTCACTCCAGCCAAGGACTTTACCGTCTGTAGTC  429

seq1  TATACCTGAAAGAAAAACCCAGATCAACTACAAACACACACACACTCTTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTGAAAGAAAAACCCAGATCAACTACAAACACACACACACTCTTT  479

seq1  CACACTTTCTTCTCTTCCTCTCTATAAAACTGAAGGAGATGTTTCTGGCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTCTTCTCTTCCTCTCTATAAAACTGAAGGAGATGTTTCTGGCA  529

seq1  CTGACTACAACCTTAGTGCTGCGTCAGACTCTGGCATTACAGTCTTTAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTACAACCTTAGTGCTGCGTCAGACTCTGGCATTACAGTCTTTAAA  579

seq1  GTAACACATTTGGGCTCCCAGGATAATGTGCACTGAACAATTTTAAATCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACATTTGGGCTCCCAGGATAATGTGCACTGAACAATTTTAAATCA  629

seq1  GTGAGACTCATTTCCAATGCCACAGAAATAATATCTAAAGTATTTTATCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTCATTTCCAATGCCACAGAAATAATATCTAAAGTATTTTATCT  679

seq1  TAAGACTTGATATGACAACAACTTATAAAGATCTTTATATTAGTCTATAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTGATATGACAACAACTTATAAAGATCTTTATATTAGTCTATAA  729

seq1  TGTATCTGCATGAAAAATACAGAGAAAAACAAAATCAGTAACTGTGTTAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGCATGAAAAATACAGAGAAAAACAAAATCAGTAACTGTGTTAC  779

seq1  TAAATTTGATAGGAGTATTGAAAAAATCATGATGAATTAATTTTTGCTAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGATAGGAGTATTGAAAAAATCATGATGAATTAATTTTTGCTAA  829

seq1  AACAAAACAAAAATCTGAAAATGTTTATATTTTCTCAAAGAGTAAAACAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAATCTGAAAATGTTTATATTTTCTCAAAGAGTAAAACAA  879

seq1  ACTAAAACACTCTGAAAGACCTTTTCCAATTGAACAGAATTCTGAAGTTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAACACTCTGAAAGACCTTTTCCAATTGAACAGAATTCTGAAGTTC  929

seq1  AAGCTGGCTTTTCCAAACATGAACCACTGCTCATGAGCACCACAAACACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCTTTTCCAAACATGAACCACTGCTCATGAGCACCACAAACACT  979

seq1  ATGAATGTACCAGTGCTGGGGAAGGTTAGAAGAAATCCATTACCAGAAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTACCAGTGCTGGGGAAGGTTAGAAGAAATCCATTACCAGAAAT  1029

seq1  ATACGGTCCTGCATCCGCTCCTCGGATGAGAAGGGAACCAGGACTCGTGC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGTCCTGCATCCGCTCCTCGGATGAGAAGGGAACCAGGACTCGTGC  1079

seq1  TCCTCCTTTGCAGACTGCAAAGTTGCTGAACATACTTTTCTTTCTTAAAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTGCAGACTGCAAAGTTGCTGAACATACTTTTCTTTCTTAAAC  1129

seq1  TAACACTAAAAATGCATCTGAAATTAATTTACTCAATTTCAATGAATATT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTAAAAATGCATCTGAAATTAATTTACTCAATTTCAATGAATATT  1179

seq1  TTATCCTCAAATGGAATTC  1210
      |||||||||||||||||||
seq2  TTATCCTCAAATGGAATTC  1198

seq1: chr11_106801882_106802935
seq2: B6Ng01-293C10.g_69_1136

seq1  GAATTCATCTCAGCTCATTCAGTGTTTAAAACATTGGGGATCTGATGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAGCTCATTCAGTGTTTAAAACATTGGGGATCTGATGTCC  50

seq1  AAGGAAAGCCGTTGAGCACAGCTGTGCTGGGTTCCAGCTGGTGGGCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGCCGTTGAGCACAGCTGTGCTGGGTTCCAGCTGGTGGGCCCAT  100

seq1  TCAGAAATCTACAGACCACGGGTCTGAGCCTGCACAGTGGGAAGCCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCTACAGACCACGGGTCTGAGCCTGCACAGTGGGAAGCCTGGC  150

seq1  CCAGAGCCTTTCTGAATGTGGGATCTGGTTCCTGTGAATTCTCATAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCTTTCTGAATGTGGGATCTGGTTCCTGTGAATTCTCATAACAA  200

seq1  AGGGAGTTTGCCAAAGTAAGCAAGTCCCTCCAAATACAGGTGAAATAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTTGCCAAAGTAAGCAAGTCCCTCCAAATACAGGTGAAATAATA  250

seq1  GTCTTGCCAAGCAAACCCTCGCAACAGGAAAACATACAGAGTTAGTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCCAAGCAAACCCTCGCAACAGGAAAACATACAGAGTTAGTTCAC  300

seq1  CCTGTGTTCTCAAAAGGCACTTTCCATAGCCGCAGAAAGCCATCCATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTCTCAAAAGGCACTTTCCATAGCCGCAGAAAGCCATCCATCCA  350

seq1  TCCAGTCAGGAATACGGAGGGAACTCCTCTCCTGCAACGCTGGGCAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCAGGAATACGGAGGGAACTCCTCTCCTGCAACGCTGGGCAGGGA  400

seq1  CACTGTGTTTCTGGATAAACTAAAGTGAGTGTCCACTCCAAGGACAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTTTCTGGATAAACTAAAGTGAGTGTCCACTCCAAGGACAGAGT  450

seq1  ATCCAAAAAAGCAGGTGTTCTTTGGTTCTCCTTGGCTTGTTCTTGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAAAAGCAGGTGTTCTTTGGTTCTCCTTGGCTTGTTCTTGGAAAG  500

seq1  AGCCACAGGTATAGACACCATGCAAGGATATGAATGTAGAAAATGTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGGTATAGACACCATGCAAGGATATGAATGTAGAAAATGTATAG  550

seq1  GCTGTAGAAGCTAGAGGGATGGCTCAGAAGTCAAGAACGCCTCTGTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGAAGCTAGAGGGATGGCTCAGAAGTCAAGAACGCCTCTGTGGCA  600

seq1  ACTGACCACTGTCTGTAACACCAGTTCTAGGACATCTGACACACTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCACTGTCTGTAACACCAGTTCTAGGACATCTGACACACTCTTCT  650

seq1  GGCCTCTACAGGGACCAGGCATGCAGGTGGTACTTAGACATACATATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTACAGGGACCAGGCATGCAGGTGGTACTTAGACATACATATACA  700

seq1  TATACATATGTATGAAATATACGACATAAAATGAGGAACTATCAACTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATGTATGAAATATACGACATAAAATGAGGAACTATCAACTGTA  750

seq1  TTGCTTAGTGTTCACTGTGAATTCTTTGGTTGAAAGGACGATTTCTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAGTGTTCACTGTGAATTCTTTGGTTGAAAGGACGATTTCTTTTC  800

seq1  -TTTTTTTTTTAAGATTTATTTATTTATTTTGTGTATGTGAGTACACTGC  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAAGATTTATTTATTTATTTTGTGTATGTGAGTACACTGC  850

seq1  AGCTGTAGAGAT-GGTTGTGAGCCTTCATGTGGTTGTTGGGATTT-GAAT  897
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  AGCTGTAGAGATGGGTTGTGAGCCTTCATGTGGTTGTTGGGATTTGGAAT  900

seq1  TTT-AGGACCTCTGCTCACTCTGGTCGGACTCGGTAGCTCCGACCCAAAG  946
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGACCTCTGCTCACTCTGGTCGGACTCGGTAGCTCCGACCCAAAG  950

seq1  ATTAGTTTATTATTA-TAAGTAAGTACACTGTAGCT-GTCTTCAG-ACAC  993
      ||||||||||||||| || ||||||||||||||||| |||||||| ||||
seq2  ATTAGTTTATTATTATTAGGTAAGTACACTGTAGCTGGTCTTCAGAACAC  1000

seq1  A-CCAGAAG-AGGGTGTCAG-ATC-TCA-TTACGGATGGTTGTGAGCCAC  1038
      | ||||||| ||||||| || ||| ||| ||||||||| |  ||||||||
seq2  ACCCAGAAGTAGGGTGTAAGAATCTTCATTTACGGATGCTGCTGAGCCAC  1050

seq1  -CATG-TGGTTGCTGGGA  1054
       |||| ||||||||||||
seq2  TCATGTTGGTTGCTGGGA  1068