BAC Information

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BAC

Clone NameB6Ng01-293L08
Chromosome11 (Build37)
Map Location 121,589,548 - 121,590,710
singlet/doubletsinglet
Overlap genenone
Upstream geneCbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
Downstream genePtchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293L08.bB6Ng01-293L08.g
ACCGA090022GA090023
length1,1561,164
definitionB6Ng01-293L08.b B6Ng01-293L08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaatatttagtcatttccctattgctttatggtattgatttc
tagttcaattccttagtaatcagactatacttggtttgactgaaagcttt
aaaattattaaagttataggactgggccacaatgcaaccagacagaatct
acatagtagggaagggcacattgcctgtaactgctgttttatttagtgtc
ttctccctgtttctagtgcacacactgagcttagcacagtctgccttaaa
gtcaatcgatacacaattcattatggtaagagaaacatgtcagtgtagtt
tcatctctgacaaggcatatactattgccacacgttttacttggacatgt
tatatagagaatgcatatttacctcaaatagtcaattacttgtccaagat
ctttaaataatagtgataatcttttggtcactctgttctgatgttctgga
gggttgaatgtagcttccatctgatgtgggggtccatgctaggtggggct
gctattgggctgggagacagaacagtggaaacctcaactgttgggagaag
gacgagaacttgggtatttgacaccaacttctttcttacttgagactcct
taccctggaacttggttctttacttgtctggagcattttagggtcatgag
atagcggtgccttccaaggtccttctggtactagggatcataagccatgc
cttccagaacaggtagagaacacattcttctgtggtcggtcagaagggtg
cattttctttagtaaaatcatagtaacaagcgggatatctttgatactaa
gcagcaataaaaccctcagaaaagggcacttgttagctaacatctcaatt
ctgctatagttactaatggacttaaatttctttagtaagcttcaagtcag
catattataaatacttttttgaaattgtttctgagactttctaataaagt
accaagcttgagaatttcagtggtccttagacctgcaagccagagtggga
ttctagtgcctcaggctgtggtatgtctgctgaggagttgttgatggctc
tggggagccctctgctgcttctctttcttttcctgctgtgtctggggtgc
ctctgcctcaataagtagctaactgccgtctctggaatggcctcttccag
gttttc
gaattcctgatttgatttaaataattttaggaagaaagattttagagatg
gtcttaattgatagaaagatgtaataaagttaaaatcaagaatagatcgt
gctcactcttcataatagtaagtaaaggttgcaaaataaagaatccaatg
agctttcatatttacattaaaaagagaaatagacttgggacaatttcatg
ttcaaggaaaaacatttaggaacaagaataaagtcactggtgtgcactat
gatgcacatggcaaggtcatgtaaaaaagtgttgctttgaacttatgatg
agcatattataatgaaacaatgctttgaacttaatatcaacatccttctg
taattcccattttatgtaacattttatctctgaggtaattttctaaagaa
ctttttgtctaagaaggtataaaaagatcagagaaaagaaatgaagatat
tggttgaatggtttggcttggggaactttgccccatccatccatccatcc
atccatccatccatccattcaaatgtgtatgtctgttcatctatatgtac
gtgtatatgtgtatatatgtaagcatgcatgaatacttatggagttgtga
tagatggtcaggtccagccagagtacaggtgtatgaatgtttgaatatgt
atctgtctatgcatatttgcctgtatagagcatcttaatcatttttcttc
ccttcctatctggttcacaaagagcttaaccagcttagccagtgaggctt
ctgctaactcaccagagaaaccacaaacaacaaatccttttacttaattc
cctgctgctaaacaggatgtgctgctaacagccaagtattagcatctact
aagggacaggtaataaagagttaactttttagtgcttaatgaagcactga
acagtaagaaagagttaaatttccctagtgtttatttagtataaagagtt
aaataaagcagagagttataatgtttaataaagcagagttaaagagagag
agcccaaaattttttacatagatagcagaagtttagagtcttttagagtt
atcagaggcattcagtataggtagaaaggctagacgcagagacatcagtc
ttaaactacatctgaacttcagccttgaaccttcatcaacctggtgttcc
attttctcaaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_121589548_121590710
seq2: B6Ng01-293L08.b_47_1202

seq1  GAATTCTCAAATATTTAGTCATTTCCCTATTGCTTTATGGTATTGATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATATTTAGTCATTTCCCTATTGCTTTATGGTATTGATTTC  50

seq1  TAGTTCAATTCCTTAGTAATCAGACTATACTTGGTTTGACTGAAAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAATTCCTTAGTAATCAGACTATACTTGGTTTGACTGAAAGCTTT  100

seq1  AAAATTATTAAAGTTATAGGACTGGGCCACAATGCAACCAGACAGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTAAAGTTATAGGACTGGGCCACAATGCAACCAGACAGAATCT  150

seq1  ACATAGTAGGGAAGGGCACATTGCCTGTAACTGCTGTTTTATTTAGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTAGGGAAGGGCACATTGCCTGTAACTGCTGTTTTATTTAGTGTC  200

seq1  TTCTCCCTGTTTCTAGTGCACACACTGAGCTTAGCACAGTCTGCCTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTGTTTCTAGTGCACACACTGAGCTTAGCACAGTCTGCCTTAAA  250

seq1  GTCAATCGATACACAATTCATTATGGTAAGAGAAACATGTCAGTGTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCGATACACAATTCATTATGGTAAGAGAAACATGTCAGTGTAGTT  300

seq1  TCATCTCTGACAAGGCATATACTATTGCCACACGTTTTACTTGGACATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTGACAAGGCATATACTATTGCCACACGTTTTACTTGGACATGT  350

seq1  TATATAGAGAATGCATATTTACCTCAAATAGTCAATTACTTGTCCAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGAGAATGCATATTTACCTCAAATAGTCAATTACTTGTCCAAGAT  400

seq1  CTTTAAATAATAGTGATAATCTTTTGGTCACTCTGTTCTGATGTTCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATAATAGTGATAATCTTTTGGTCACTCTGTTCTGATGTTCTGGA  450

seq1  GGGTTGAATGTAGCTTCCATCTGATGTGGGGGTCCATGCTAGGTGGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAATGTAGCTTCCATCTGATGTGGGGGTCCATGCTAGGTGGGGCT  500

seq1  GCTATTGGGCTGGGAGACAGAACAGTGGAAACCTCAACTGTTGGGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGGGCTGGGAGACAGAACAGTGGAAACCTCAACTGTTGGGAGAAG  550

seq1  GACGAGAACTTGGGTATTTGACACCAACTTCTTTCTTACTTGAGACTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGAACTTGGGTATTTGACACCAACTTCTTTCTTACTTGAGACTCCT  600

seq1  TACCCTGGAACTTGGTTCTTTACTTGTCTGGAGCATTTTAGGGTCATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGAACTTGGTTCTTTACTTGTCTGGAGCATTTTAGGGTCATGAG  650

seq1  ATAGCGGTGCCTTCCAAGGTCCTTCTGGTACTAGGGATCATAAGCCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGGTGCCTTCCAAGGTCCTTCTGGTACTAGGGATCATAAGCCATGC  700

seq1  CTTCCAGAACAGGTAGAGAACACATTCTTCTGTGGTCGGTCAGAAGGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAACAGGTAGAGAACACATTCTTCTGTGGTCGGTCAGAAGGGTG  750

seq1  CATTTTCTTTAGTAAAATCATAGTAACAAGCGGGATATCTTTGATACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTAGTAAAATCATAGTAACAAGCGGGATATCTTTGATACTAA  800

seq1  GCAGCAATAAAACCCTCAGAAAAGGGCACTTGTTAGCTAACATCTCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATAAAACCCTCAGAAAAGGGCACTTGTTAGCTAACATCTCAATT  850

seq1  CTGCTATAGTTACTAATGGACTTAAATTTCTTTAGTAAGCTTCAAGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATAGTTACTAATGGACTTAAATTTCTTTAGTAAGCTTCAAGTCAG  900

seq1  CATATTATAAATACTTTTTTGAAATTGTTTCTGAGACTTTCTAATAAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTATAAATACTTTTTTGAAATTGTTTCTGAGACTTTCTAATAAAGT  950

seq1  ACCAAGCTTGAGAATTTCAGTGGTCCTTAGACCTGCAAGCCAGAGTGGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTTGAGAATTTCAGTGGTCCTTAGACCTGCAAGCCAGAGTGGGA  1000

seq1  TTCTAGGTGCCTCAGGGCTGTGGTATGTCTGCTTGAAGGAGTTGTTGATG  1050
      ||||| |||||||| ||||||||||||||||||   ||||||||||||||
seq2  TTCTA-GTGCCTCA-GGCTGTGGTATGTCTGCT--GAGGAGTTGTTGATG  1046

seq1  GCTCTGGGGAGCCCTTCTGCTTGCTTCTCTTTTCTTTCCTGCTGGTGTCC  1100
      |||||||||||||| ||||| |||||||||||  ||||||||| ||||| 
seq2  GCTCTGGGGAGCCC-TCTGC-TGCTTCTCTTTCTTTTCCTGCT-GTGTCT  1093

seq1  TGGGTGCTCTTGGCTC-ATAGGTAGCCTTACTGCCGTCTCTTGGATGG-C  1148
       ||||||   || ||| ||| |||| || |||||||||||| | |||| |
seq2  GGGGTGCCTCTGCCTCAATAAGTAG-CTAACTGCCGTCTCTGGAATGGCC  1142

seq1  TCTTCCAGTGTTTTC  1163
      |||||||| ||||||
seq2  TCTTCCAG-GTTTTC  1156