BAC Information

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BAC

Clone NameB6Ng01-294H24
Chromosome11 (Build37)
Map Location 18,741,449 - 18,858,547
singlet/doubletdoublet
Overlap geneMeis1
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294H24.bB6Ng01-294H24.g
ACCGA090610GA090611
length1,1531,077
definitionB6Ng01-294H24.b B6Ng01-294H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,741,449 - 18,742,608)(18,857,458 - 18,858,547)
sequence
gaattctatgcagttctcagacagaaaatagacttgtcggggaagaaacc
tcaggccataatgtaatagaagcttgaagagactaatgggcacaaactgt
tcctaataatgtccttaagatactcaagtctttgtgtaccaatgacacaa
gcatttgtttaatatttcccaggatgtgacttactccttctttttggata
agagattattgtggagggatgaatgctttgagactacacactcataagtt
tggcaaaagacaaccccaaacccaaatcctatagacagcttgaagtctga
tcggaactcagacacgcacacttgtttacgtattgtgtattaccactgca
cacacgaggctgagtggctgcagtcaacatcacagagctgacgaaccccc
aaatatttatgatctagccattcacaagacatttgaggacatccagacca
cagtgtttatcttctaatgattggttcgcaaagttcacaaaaatttctat
aggctagaaaactaagacccattggtgcaagatgaatgttaatgacgtca
tgttccccatcacaaagaaggcatgtacaactggtggtctatcatctcag
tttagtgccacccacttgtattaaggacatgccaggcagttcatatttcc
tgccattttagaagaacaaagccttagcataaagacttagtcacatgttg
atatgatgttttagcaaaatcatcaagtgaattacaaataagccatgatg
aactgatgtttagaatgggaaggacgtttctcaccaggtgctaataattc
agaggtagatttggctgcaggcttccttgcattaatacagcgctccctta
atcaaaggacagcttaaaagaacatgaaatgagctgacacgttttgacat
gattaccaactgcagatcagttacatgtgcacctgccacattggagatac
cgtgaaaagtttaattcccctaacctaatggttttaaatcagtcctgaga
taacatttcaaacatataagcatccagtttggaaacaactccaccccagc
ttggaaattggacatgtgccgccaaagcctaaccctttcttgcgttcccc
cactgaacctgatacaaagtaactataaagcgcgagactgtaccacatag
ctt
gaattctaggccacaggccaactcagaagtcagacaggcctggggttggc
attataaggtctgtttgtgaggacatggccattgctcactcagtcctgct
gaaagggggctagggcagcggccaggaacagaccttttctcagctgaggt
agtgttcgggccacaggtaggtccctaattgggattgaagctgagctttc
tgtaccttcttgctccagatagatttcagttggtgtcctttgacatcact
gctgaaagcctcctgtcaccttcacagctttgggctgtgcatgaacatag
tttccatggggaccaccactgtctcttggtgtgggacacacatgtgcttc
tgctctaggctggtgtttcaagagttagccagctagcttgtttgtgtttc
tgtattcctttgtccaggggcagggagatgtgtcctcttgtgacacaaaa
atattgagaaaaactaaaacaaaacagaaaacccctaagtttcctttcac
cttcccttctgcccctatttcccttttctcgtgctcaccagcctgccctg
tctgcgcggtgagagcttccaataccaaagagccagagcgcctcgggtga
ggaaatacagctgctgcttttctcatcagcgcatgctcagatttctggtg
tagagagatccttgacgatgctcgagaatagggccggaaagttcaggcac
agactcatgattatttcaacagtggcttctccggggtccctagtctagca
agagtgcgtgctttagctggagagcttcccttctccacttccacctcaaa
cgtggagggcttttgtctgtttttaaaataggacgttctccttgccgctc
ggaaggtaacgtgggcaaattcttccaacgttttgcattgcagctttaca
aagccctaagctcgtagcttcccattcttgtgagcttcctggggtggtga
cactttacaatcgactctttgttcagctttcacacagagccctgctactc
tctgactcagtgtacagatgcacctccttggtgtgtcttctctctgcaga
gaaatcagatagactgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_18741449_18742608
seq2: B6Ng01-294H24.b_46_1198

seq1  GAATTCTATGCAGTTCTCAGACAGAAAATAGACTTGTCGGGGAAGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCAGTTCTCAGACAGAAAATAGACTTGTCGGGGAAGAAACC  50

seq1  TCAGGCCATAATGTAATAGAAGCTTGAAGAGACTAATGGGCACAAACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCATAATGTAATAGAAGCTTGAAGAGACTAATGGGCACAAACTGT  100

seq1  TCCTAATAATGTCCTTAAGATACTCAAGTCTTTGTGTACCAATGACACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATAATGTCCTTAAGATACTCAAGTCTTTGTGTACCAATGACACAA  150

seq1  GCATTTGTTTAATATTTCCCAGGATGTGACTTACTCCTTCTTTTTGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTTTAATATTTCCCAGGATGTGACTTACTCCTTCTTTTTGGATA  200

seq1  AGAGATTATTGTGGAGGGATGAATGCTTTGAGACTACACACTCATAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTATTGTGGAGGGATGAATGCTTTGAGACTACACACTCATAAGTT  250

seq1  TGGCAAAAGACAACCCCAAACCCAAATCCTATAGACAGCTTGAAGTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAAGACAACCCCAAACCCAAATCCTATAGACAGCTTGAAGTCTGA  300

seq1  TCGGAACTCAGACACGCACACTTGTTTACGTATTGTGTATTACCACTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAACTCAGACACGCACACTTGTTTACGTATTGTGTATTACCACTGCA  350

seq1  CACACGAGGCTGAGTGGCTGCAGTCAACATCACAGAGCTGACGAACCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGAGGCTGAGTGGCTGCAGTCAACATCACAGAGCTGACGAACCCCC  400

seq1  AAATATTTATGATCTAGCCATTCACAAGACATTTGAGGACATCCAGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATGATCTAGCCATTCACAAGACATTTGAGGACATCCAGACCA  450

seq1  CAGTGTTTATCTTCTAATGATTGGTTCGCAAAGTTCACAAAAATTTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTATCTTCTAATGATTGGTTCGCAAAGTTCACAAAAATTTCTAT  500

seq1  AGGCTAGAAAACTAAGACCCATTGGTGCAAGATGAATGTTAATGACGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGAAAACTAAGACCCATTGGTGCAAGATGAATGTTAATGACGTCA  550

seq1  TGTTCCCCATCACAAAGAAGGCATGTACAACTGGTGGTCTATCATCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCATCACAAAGAAGGCATGTACAACTGGTGGTCTATCATCTCAG  600

seq1  TTTAGTGCCACCCACTTGTATTAAGGACATGCCAGGCAGTTCATATTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGCCACCCACTTGTATTAAGGACATGCCAGGCAGTTCATATTTCC  650

seq1  TGCCATTTTAGAAGAACAAAGCCTTAGCATAAAGACTTAGTCACATGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTAGAAGAACAAAGCCTTAGCATAAAGACTTAGTCACATGTTG  700

seq1  ATATGATGTTTTAGCAAAATCATCAAGTGAATTACAAATAAGCCATGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGTTTTAGCAAAATCATCAAGTGAATTACAAATAAGCCATGATG  750

seq1  AACTGATGTTTAGAATGGGAAGGACGTTTCTCACCAGGTGCTAATAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGTTTAGAATGGGAAGGACGTTTCTCACCAGGTGCTAATAATTC  800

seq1  AGAGGTAGATTTGGCTGCAGGCTTCCTTGCATTAATACAGCGCTCCCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGATTTGGCTGCAGGCTTCCTTGCATTAATACAGCGCTCCCTTA  850

seq1  ATCAAAGGACAGCTTAAAAGAACATGAAATGAGCTGACACGTTTTGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGACAGCTTAAAAGAACATGAAATGAGCTGACACGTTTTGACAT  900

seq1  GATTACCAACTGCAGATCAGTTACATGTGCA-CTG-CACATTGAGGATAC  948
      ||||||||||||||||||||||||||||||| ||| |||||||  |||||
seq2  GATTACCAACTGCAGATCAGTTACATGTGCACCTGCCACATTGGAGATAC  950

seq1  GGTGGAAAGTTTTAATTCCCCTAACTTATGGGTTTTAAATCAGTTCCTGA  998
       ||| |||| ||||||||||||||| ||  ||||||||||||| ||||||
seq2  CGTGAAAAG-TTTAATTCCCCTAACCTAATGGTTTTAAATCAG-TCCTGA  998

seq1  GATAAACATTTCAAACATATAAGCATCCAGTTTTGAAAC-ACTCACCCAA  1047
      ||| ||||||||||||||||||||||||||||| ||||| ||||  ||  
seq2  GAT-AACATTTCAAACATATAAGCATCCAGTTTGGAAACAACTCCACCCC  1047

seq1  ACCTGGGAAATGGGACATGTG-CGCAAAAGCCTTACCCTTTCCTGCGTTT  1096
      | || |||||| ||||||||| ||| ||||||| |||||||| |||||| 
seq2  AGCTTGGAAATTGGACATGTGCCGCCAAAGCCTAACCCTTTCTTGCGTTC  1097

seq1  CCCCACTTGACTTTGAATTACAAAGTAAACTATAAAAGCGGCAGAAGAAT  1146
      |||||| |||   |||  |||||||| |||||| ||||||  ||    | 
seq2  CCCCAC-TGAACCTGA--TACAAAGT-AACTAT-AAAGCGCGAG----AC  1138

seq1  TGTA-CACATAGCTT  1160
      |||| ||||||||||
seq2  TGTACCACATAGCTT  1153

seq1: chr11_18857458_18858547
seq2: B6Ng01-294H24.g_69_1145 (reverse)

seq1  CCCCCCCCCCCCAGTCTTATCTGATTTTCTCTGCAGAGAAGGAAGACACA  50
      |||||||||||||||| ||||||| ||||||||||||||  |||||||||
seq2  CCCCCCCCCCCCAGTC-TATCTGA-TTTCTCTGCAGAGA--GAAGACACA  46

seq1  -CAGGGAGGTGCATCTGTACACCTGAGTCAGAGGAAGTAAGCAGGGCTCT  99
       || ||||||||||||||||| |||||||||||  ||| |||||||||||
seq2  CCAAGGAGGTGCATCTGTACA-CTGAGTCAGAG--AGT-AGCAGGGCTCT  92

seq1  GTGTGAAAGCCTTGAAACAAAGAAGTCGAATTGT-AAGTGTCCACCAACC  148
      ||||||||||  || ||||||| ||||| ||||| |||||| ||||| ||
seq2  GTGTGAAAGC--TG-AACAAAG-AGTCG-ATTGTAAAGTGT-CACCACCC  136

seq1  CAGGAAGCTCACAAGAATGGGAAGCTACGAGCTTTAGGGCTTTGTAAAGC  198
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGAAGCTCACAAGAATGGGAAGCTACGAGC-TTAGGGCTTTGTAAAGC  185

seq1  TGCAATGCAAAACCTTGGAAGAATTTGCCCCACCTTACC-TCCGAGCGGC  247
      ||||||||||||| ||||||||||||| ||||| ||||| ||||||||||
seq2  TGCAATGCAAAACGTTGGAAGAATTTG-CCCACGTTACCTTCCGAGCGGC  234

seq1  AAGGAGAACGTCCTATTTTAAAAACAGACAAAAGCCCTCCACGTTTGAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAACGTCCTATTTTAAAAACAGACAAAAGCCCTCCACGTTTGAGG  284

seq1  TGGAAGTGGAGAAGGGAAGCTCTCCAGCTAAAGCACGCACTCTTGCTAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGGAGAAGGGAAGCTCTCCAGCTAAAGCACGCACTCTTGCTAGA  334

seq1  CTAGGGACCCCGGAGAAGCCACTGTTGAAATAATCATGAGTCTGTGCCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGACCCCGGAGAAGCCACTGTTGAAATAATCATGAGTCTGTGCCTG  384

seq1  AACTTTCCGGCCCTATTCTCGAGCATCGTCAAGGATCTCTCTACACCAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCGGCCCTATTCTCGAGCATCGTCAAGGATCTCTCTACACCAGA  434

seq1  AATCTGAGCATGCGCTGATGAGAAAAGCAGCAGCTGTATTTCCTCACCCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAGCATGCGCTGATGAGAAAAGCAGCAGCTGTATTTCCTCACCCG  484

seq1  AGGCGCTCTGGCTCTTTGGTATTGGAAGCTCTCACCGCGCAGACAGGGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCTCTGGCTCTTTGGTATTGGAAGCTCTCACCGCGCAGACAGGGCA  534

seq1  GGCTGGTGAGCACGAGAAAAGGGAAATAGGGGCAGAAGGGAAGGTGAAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGAGCACGAGAAAAGGGAAATAGGGGCAGAAGGGAAGGTGAAAG  584

seq1  GAAACTTAGGGGTTTTCTGTTTTGTTTTAGTTTTTCTCAATATTTTTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTAGGGGTTTTCTGTTTTGTTTTAGTTTTTCTCAATATTTTTGTG  634

seq1  TCACAAGAGGACACATCTCCCTGCCCCTGGACAAAGGAATACAGAAACAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGAGGACACATCTCCCTGCCCCTGGACAAAGGAATACAGAAACAC  684

seq1  AAACAAGCTAGCTGGCTAACTCTTGAAACACCAGCCTAGAGCAGAAGCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGCTAGCTGGCTAACTCTTGAAACACCAGCCTAGAGCAGAAGCAC  734

seq1  ATGTGTGTCCCACACCAAGAGACAGTGGTGGTCCCCATGGAAACTATGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTCCCACACCAAGAGACAGTGGTGGTCCCCATGGAAACTATGTT  784

seq1  CATGCACAGCCCAAAGCTGTGAAGGTGACAGGAGGCTTTCAGCAGTGATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAGCCCAAAGCTGTGAAGGTGACAGGAGGCTTTCAGCAGTGATG  834

seq1  TCAAAGGACACCAACTGAAATCTATCTGGAGCAAGAAGGTACAGAAAGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGACACCAACTGAAATCTATCTGGAGCAAGAAGGTACAGAAAGCT  884

seq1  CAGCTTCAATCCCAATTAGGGACCTACCTGTGGCCCGAACACTACCTCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCAATCCCAATTAGGGACCTACCTGTGGCCCGAACACTACCTCAG  934

seq1  CTGAGAAAAGGTCTGTTCCTGGCCGCTGCCCTAGCCCCCTTTCAGCAGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAAGGTCTGTTCCTGGCCGCTGCCCTAGCCCCCTTTCAGCAGGA  984

seq1  CTGAGTGAGCAATGGCCATGTCCTCACAAACAGACCTTATAATGCCAACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGAGCAATGGCCATGTCCTCACAAACAGACCTTATAATGCCAACC  1034

seq1  CCAGGCCTGTCTGACTTCTGAGTTGGCCTGTGGCCTAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTGTCTGACTTCTGAGTTGGCCTGTGGCCTAGAATTC  1077