BAC Information

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BAC

Clone NameB6Ng01-294K24
Chromosome11 (Build37)
Map Location 14,993,331 - 15,112,817
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294K24.bB6Ng01-294K24.g
ACCGA090752GA090753
length1,0821,073
definitionB6Ng01-294K24.b B6Ng01-294K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,993,331 - 14,994,405)(15,111,739 - 15,112,817)
sequence
gaattctcaaaagaagcccaaatagacagtaaatgtgaaagtacacactt
ggatactataatgcttagagaaggcaattcatagctgcactgatactttg
tctcatactagtcctaatgcatattttcaaaaatgaattctgacaaggat
gccagtaaaatagaccacctacattcttgattaggttttaaattagtctt
gccactagaaacaattcctagaaataaactacaatagatttcagttacac
attgcctgtgtttagacctgcaggtatcaaaggcagtattcaataaagag
gcacccatatttattgtatctctattcaaaaaaaaaaaaaaaaaaaccaa
agctacatcacagatttagtttacctgatagtaaaatttacaaatatata
aaatgtattcattttgattatataaaatttgtagaattgaaactcatcac
tatcactctacataaaataagcaagactgaaaagtatgtgtgctaaacca
tgactatattcccagcacttgtggattgaaattaggaaaattaggagttc
aagccatgttccaaatgttaacagacttgatgcaagcttgaagcaaaaaa
aaaaaaaaaaaaaaaaaaaaaacccttttgccaacacacacacacacaca
cacacacacacacacgcacacaccacatacacactcaaagagagcaataa
cattttttcttatacacagatctttttaaaagtcatgagattagaaggga
gtcaattaggaggctaatgggagattcatgggtgtgattataaaagaaaa
atattatcaaaatacctaatgcatgaatatgaaaatgtcttaatgaaata
gaagtttttataaataatatatgcaaataaaagtgatattgaaaatgagt
aatttctatggttgcttcatttccttggctcaaacattataagaaaaaac
tgcattataattcccattctggataactgtaaattatctaagaagaaaat
cagacttttatggttttaagttatcagatgaagaaggcattggtgttcat
ccatgtgggaagaacacatgactgcccagtgc
gaattctctgttcagctgtgtaccctatgctttaaaattgggttatttgg
gttttgggagaaaatttaaactacctttttagtcacctaactggaaatgg
gtccaattaatgggtttatatgtttttaatttaatatttgtggattttcc
atatgttttaaatttaaatcatgccttcatgttatgacaattttcattga
aatatcttatgaccacacacttttatctataattgtattaatttgtgcag
tatctttcaattttggtatgtttgattagaggctttccttttcctttcaa
agacctaaaacatctatcgattgtttattcttattcctctttttgtcact
atccctttatggattttctaaactaatatttcttattaccatctgctgca
tttgaatttaacttcatctactttgctagaaatctgagctcttttgtcat
gttgtttttatgagagcttcctgcatttttaatattaatttctaagtttt
ttcttaacatgagaatattatagtcaaatcacccactattttatttcctg
acacattaattaataattttatgagttttgagtgtttcttttaaaaatca
tgagtcttaatacttggtgcataaatattaaaaattgttctattgttgat
attcccctttagtgatacgtactggtcttctatatatcacctctttagtg
tttagtgccttcgacaattaggatggttttctggaaacaatatacgatta
catacttttaaccaatagtttttaatgctatttggcaatttataggtatt
attgagaatattttactaaaattttcttgtataactgaatatattgtaca
tgtgactttatctcagttctttctactctgtggatgttcacgttctttga
atcttcaaaatgcttgttagcttctttctttgatgtgtctcaatgtatta
ttgtttcaaattcaccctcatcttcatattcactttttacttgtcctact
gtgatatattttttacagtttatatttatttatgctttactctcagtcct
aaaccctttgtcttatttttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_14993331_14994405
seq2: B6Ng01-294K24.b_48_1129

seq1  GAATTCTCAAAAGAAGCCCAAATAGACAGTAAATGTGAAAGTACACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAGAAGCCCAAATAGACAGTAAATGTGAAAGTACACACTT  50

seq1  GGATACTATAATGCTTAGAGAAGGCAATTCATAGCTGCACTGATACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTATAATGCTTAGAGAAGGCAATTCATAGCTGCACTGATACTTTG  100

seq1  TCTCATACTAGTCCTAATGCATATTTTCAAAAATGAATTCTGACAAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATACTAGTCCTAATGCATATTTTCAAAAATGAATTCTGACAAGGAT  150

seq1  GCCAGTAAAATAGACCACCTACATTCTTGATTAGGTTTTAAATTAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAAAATAGACCACCTACATTCTTGATTAGGTTTTAAATTAGTCTT  200

seq1  GCCACTAGAAACAATTCCTAGAAATAAACTACAATAGATTTCAGTTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAGAAACAATTCCTAGAAATAAACTACAATAGATTTCAGTTACAC  250

seq1  ATTGCCTGTGTTTAGACCTGCAGGTATCAAAGGCAGTATTCAATAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGTGTTTAGACCTGCAGGTATCAAAGGCAGTATTCAATAAAGAG  300

seq1  GCACCCATATTTATTGTATCTCTATTCAAAAAAAAAAAAAAAAAAACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATATTTATTGTATCTCTATTCAAAAAAAAAAAAAAAAAAACCAA  350

seq1  AGCTACATCACAGATTTAGTTTACCTGATAGTAAAATTTACAAATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATCACAGATTTAGTTTACCTGATAGTAAAATTTACAAATATATA  400

seq1  AAATGTATTCATTTTGATTATATAAAATTTGTAGAATTGAAACTCATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTCATTTTGATTATATAAAATTTGTAGAATTGAAACTCATCAC  450

seq1  TATCACTCTACATAAAATAAGCAAGACTGAAAAGTATGTGTGCTAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCTACATAAAATAAGCAAGACTGAAAAGTATGTGTGCTAAACCA  500

seq1  TGACTATATTCCCAGCACTTGTGGATTGAAATTAGGAAAATTAGGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATATTCCCAGCACTTGTGGATTGAAATTAGGAAAATTAGGAGTTC  550

seq1  AAGCCATGTTCCAAATGTTAACAGACTTGATGCAAGCTTGAAGCAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGTTCCAAATGTTAACAGACTTGATGCAAGCTTGAAGCAAAAAA  600

seq1  AAAAAAAAAAAAAAAAAAAAAAACCTTTTGCCAACACACACACACACACA  650
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAACCCTTTTGCCAACACACACACACACACA  650

seq1  CACACACACACACACGCACACACCACATACACACTCAAAGAGAGCAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACGCACACACCACATACACACTCAAAGAGAGCAATAA  700

seq1  CA-TTTTTCTTATACACAGATCTTTTTAAAAGTCATGAGATTAGAA-GGA  748
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATTTTTTCTTATACACAGATCTTTTTAAAAGTCATGAGATTAGAAGGGA  750

seq1  GTCAATTAGGAGGCTAATGGGAGATTCAT-GGTGTGATTATAAA--GAAA  795
      ||||||||||||||||||||||||||||| ||||||||||||||   |||
seq2  GTCAATTAGGAGGCTAATGGGAGATTCATGGGTGTGATTATAAAAGAAAA  800

seq1  ATATTATCAAAATACCTAATGCATGAATATGAAAATGTCTTAATGAAATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCAAAATACCTAATGCATGAATATGAAAATGTCTTAATGAAATA  850

seq1  GAAGTTTTTATAAATAATATATGCAAATAAAAGTGATAATGAAAATGAGT  895
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAGTTTTTATAAATAATATATGCAAATAAAAGTGATATTGAAAATGAGT  900

seq1  AATTTCTATGGTTGCTTCATTTTCCTTGGCTCAAACATTATAAG-AAAAA  944
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  AATTTCTATGGTTGCTTCA-TTTCCTTGGCTCAAACATTATAAGAAAAAA  949

seq1  CTGCA-TATAATTCCCATTCTGGATAACTGTAAATTATCTAAG-AGAAAA  992
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGCATTATAATTCCCATTCTGGATAACTGTAAATTATCTAAGAAGAAAA  999

seq1  TCAGAC-TTTATGTTTTAAAGTAATTCAGATGAAGAAAGGCATT-GTGTT  1040
      |||||| |||||| ||| |||| | |||||||||| |||||||| |||||
seq2  TCAGACTTTTATGGTTTTAAGTTA-TCAGATGAAG-AAGGCATTGGTGTT  1047

seq1  CATCCATGTGG--AGAACACAATTGACTGCCCAGTGC  1075
      |||||||||||  ||||||||  ||||||||||||||
seq2  CATCCATGTGGGAAGAACACA--TGACTGCCCAGTGC  1082

seq1: chr11_15111739_15112817
seq2: B6Ng01-294K24.g_67_1139 (reverse)

seq1  ACCAAA--------AAGGGGTTTAAGGACTGAGAGGTTAAAGCAATTAAA  42
      ||||||        || |||||| |||||||||||  |||||||  ||||
seq2  ACCAAAAATAAGACAAAGGGTTT-AGGACTGAGAG--TAAAGCA--TAAA  45

seq1  T-AATATAAACTGTAAAAAATATAATCACAGGTAGGACAAAGTAAAAAAG  91
      | ||||||||||||||||||||| |||||| ||||||| |||| ||||||
seq2  TAAATATAAACTGTAAAAAATAT-ATCACA-GTAGGAC-AAGT-AAAAAG  91

seq1  TGAATATGAAAGATGGAGGGTGAATTTGAAACAATTAATACATTGAGACA  141
      |||||||| ||||| ||||||||||||||||||| |||||||||||||||
seq2  TGAATATG-AAGAT-GAGGGTGAATTTGAAACAA-TAATACATTGAGACA  138

seq1  CATCAAAAGAAAAGAAGCTAACAAGCATTTTTGAAGATTCAAAGAACGTG  191
      |||||||   ||||||||||||||||| ||||||||||||||||||||||
seq2  CATCAAA--GAAAGAAGCTAACAAGCA-TTTTGAAGATTCAAAGAACGTG  185

seq1  AACATCCACAGAGTAGAAAGAACTGAGATAAAGTCACATGTACAATATAT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCACAGAGTAGAAAGAACTGAGATAAAGTCACATGTACAATATAT  235

seq1  TCAGTTATACAAGAAAATTTTAGTAAAATATTCTCAATAATACCTATAAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATACAAGAAAATTTTAGTAAAATATTCTCAATAATACCTATAAA  285

seq1  TTGCCAAATAGCATTAAAAACTATTGGTTAAAAGTATGTAATCGTATATT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAATAGCATTAAAAACTATTGGTTAAAAGTATGTAATCGTATATT  335

seq1  GTTTCCAGAAAACCATCCTAATTGTCGAAGGCACTAAACACTAAAGAGGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGAAAACCATCCTAATTGTCGAAGGCACTAAACACTAAAGAGGT  385

seq1  GATATATAGAAGACCAGTACGTATCACTAAAGGGGAATATCAACAATAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATAGAAGACCAGTACGTATCACTAAAGGGGAATATCAACAATAGA  435

seq1  ACAATTTTTAATATTTATGCACCAAGTATTAAGACTCATGATTTTTAAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTTAATATTTATGCACCAAGTATTAAGACTCATGATTTTTAAAA  485

seq1  GAAACACTCAAAACTCATAAAATTATTAATTAATGTGTCAGGAAATAAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTCAAAACTCATAAAATTATTAATTAATGTGTCAGGAAATAAAA  535

seq1  TAGTGGGTGATTTGACTATAATATTCTCATGTTAAGAAAAAACTTAGAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGTGATTTGACTATAATATTCTCATGTTAAGAAAAAACTTAGAAA  585

seq1  TTAATATTAAAAATGCAGGAAGCTCTCATAAAAACAACATGACAAAAGAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTAAAAATGCAGGAAGCTCTCATAAAAACAACATGACAAAAGAG  635

seq1  CTCAGATTTCTAGCAAAGTAGATGAAGTTAAATTCAAATGCAGCAGATGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTTCTAGCAAAGTAGATGAAGTTAAATTCAAATGCAGCAGATGG  685

seq1  TAATAAGAAATATTAGTTTAGAAAATCCATAAAGGGATAGTGACAAAAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAAATATTAGTTTAGAAAATCCATAAAGGGATAGTGACAAAAAG  735

seq1  AGGAATAAGAATAAACAATCGATAGATGTTTTAGGTCTTTGAAAGGAAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAGAATAAACAATCGATAGATGTTTTAGGTCTTTGAAAGGAAAA  785

seq1  GGAAAGCCTCTAATCAAACATACCAAAATTGAAAGATACTGCACAAATTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCTCTAATCAAACATACCAAAATTGAAAGATACTGCACAAATTA  835

seq1  ATACAATTATAGATAAAAGTGTGTGGTCATAAGATATTTCAATGAAAATT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTATAGATAAAAGTGTGTGGTCATAAGATATTTCAATGAAAATT  885

seq1  GTCATAACATGAAGGCATGATTTAAATTTAAAACATATGGAAAATCCACA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAACATGAAGGCATGATTTAAATTTAAAACATATGGAAAATCCACA  935

seq1  AATATTAAATTAAAAACATATAAACCCATTAATTGGACCCATTTCCAGTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAATTAAAAACATATAAACCCATTAATTGGACCCATTTCCAGTT  985

seq1  AGGTGACTAAAAAGGTAGTTTAAATTTTCTCCCAAAACCCAAATAACCCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTAAAAAGGTAGTTTAAATTTTCTCCCAAAACCCAAATAACCCA  1035

seq1  ATTTTAAAGCATAGGGTACACAGCTGAACAGAGAATTC  1079
      ||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGCATAGGGTACACAGCTGAACAGAGAATTC  1073