BAC Information

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BAC

Clone NameB6Ng01-294O22
Chromosome11 (Build37)
Map Location 26,930,171 - 27,056,364
singlet/doubletdoublet
Overlap geneLOC100042367
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294O22.bB6Ng01-294O22.g
ACCGA090931GA090932
length1,0681,105
definitionB6Ng01-294O22.b B6Ng01-294O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,930,171 - 26,930,850)(27,055,255 - 27,056,364)
sequence
gaattcaggatagtggagatcccagcactgcagcatatctgccaagggaa
gatgcaggtgtggagtggagccagtataatcctaagagagaaggtgtgtg
tgctgaaggttcagagttggaggtgtgggctacctaagcttgttggagat
catcttaaagtaccacaaatctcaggtgccaggtacaaagctgtcaaact
gtatttatattttgctggaattgggctttgctttcaagtgactgtttcat
actctagttcttccactttggaatgtgagtgctccttctgtgctattatg
tattggaagcattattttattagagttcacacatttgtcaagtggtaggt
cttaaagaccatgaaaactttcaagttggactgttttatgttagaagata
aacatctttgggatcaaggaatagaaagttatggcttataagtgatgagt
tttgctgtcaaattaacaagtggtagacttatggtgattatttttaattg
tcaacttggtacaatctagaaccacctggatagaagtctcatgttattat
ttatgtcatgttgggctctggacatatttgtaggaaattagttttataat
gttaattatatggaaaagggtctcaaaataggtggcaccattctctggag
ttgaatctgagatagtaaaaggagaatatgagaagatgatctgagaacaa
acatgcatccttaacatgttcctttctgttctgaactgtggatgtaatgt
ggtttgctgcttcaagttcctgccaccttggcctccctgcagtgatgtac
tgtggttcctctggaactgtcagtcaaagcaaagccttttttcctttgag
cttcctctcttaatgcatcttagagcagcaaaaaagcagcaatgacacac
catccaggcacacataaaggcagcaatgataccatctaaaagatactgaa
aggcatttgacaaaagttatcatccttctgataaggttcataaaaattac
agtagaagaacatattccactaatatagtactgtgtgatttgatatgctt
gcccatgggagtggtatt

gaattccttactggctgtattgagaccctttgggttgggagtcttgggat
tcttggtattctcagacaatgaaccaagatgttgtgcctacttcatgagc
cccaaaagatcaccaaggagctgttttctgtgaaattacacaagggtctt
tattcaagcttgagctcaggatacactgttgtcactgatgcagcaggaca
ggagggtgaagccccaggcccagtttcaagtaagcaaacaagcaaggggt
tatccagcttggtacacatctgattggagggctattatggaatttgttgc
actttacaatgattggctggtgctgggagctaacccataaatatttataa
atacttatttttaggtacaactataacttctgttttcctcctgattggtg
gttattagggagtaacctagagaccagtgctaggtgctggcttgttagtt
aactcaaattcaacctcaggtcaggttctgtaagacagagtctgaactta
agatggaattggtctggtctctcagatgagagctgaaaaggcaagtcaat
gtaagtagttaatccttaacatgagaataaaaggtagctgtgtttttcca
tgttcagaatatactctgtcttactggagatacagaagaaaaagatttca
aagaaaaagttctaggggaatttacatttatgcctacagaagcaagaata
aaatgatgtggctttcccccaggcagagagaaagatatgggttactgaat
ggaattagttggaaagtgggggataaaaaagaaaatgcaatcatcttcat
gtaatctttcaatgtgagttctggctggaaatcaaatttattacctactc
cccacatcttaaatccatatttggttgagaaagggcatgtgtggttaaaa
cttattgtgtactttctttatatatatgaaatacattaagtgcatcttgg
aatgatcttatgaaatagagaccctcattatactggggagatccaggtaa
acattacaattgagttatgtgctgttagtgaagagagaacagaagtctta
gagatgttgaaagcgatgtctatgagtgagtatgaaattggaaatggaac
cgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26930171_26930850
seq2: B6Ng01-294O22.b_447_1116

seq1  TAAACATCTTTGGGATCAAGGAATAGAAAGTTATGGCTTATAAGTGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCTTTGGGATCAAGGAATAGAAAGTTATGGCTTATAAGTGATGA  50

seq1  GTTTTGCTGTCAAATTAACAAGTGGTAGACTTATGGTGATTATTTTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTGTCAAATTAACAAGTGGTAGACTTATGGTGATTATTTTTAAT  100

seq1  TGTCAACTTGGTACAATCTAGAACCACCTGGATAGAAGTCTCATGTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTTGGTACAATCTAGAACCACCTGGATAGAAGTCTCATGTTATT  150

seq1  ATTTATGTCATGTTGGGCTCTGGACATATTTGTAGGAAATTAGTTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTCATGTTGGGCTCTGGACATATTTGTAGGAAATTAGTTTTATA  200

seq1  ATGTTAATTATATGGAAAAGGGTCTCAAAATAGGTGGCACCATTCTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTATATGGAAAAGGGTCTCAAAATAGGTGGCACCATTCTCTGG  250

seq1  AGTTGAATCTGAGATAGTAAAAGGAGAATATGAGAAGATGATCTGAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATCTGAGATAGTAAAAGGAGAATATGAGAAGATGATCTGAGAAC  300

seq1  AAACATGCATCCTTAACATGTTCCTTTCTGTTCTGAACTGTGGATGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCATCCTTAACATGTTCCTTTCTGTTCTGAACTGTGGATGTAAT  350

seq1  GTGGTTTGCTGCTTCAAGTTCCTGCCACCTTGGCCTCCCTGCAGTGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGCTGCTTCAAGTTCCTGCCACCTTGGCCTCCCTGCAGTGATGT  400

seq1  ACTGTGGTTCCTCTGGAACTGTCAGTCAAAGCAAAGCCTTTTTTCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTTCCTCTGGAACTGTCAGTCAAAGCAAAGCCTTTTTTCCTTTG  450

seq1  AGCTTCCTCTCTTAATGCATCTTAGAGCAGCAAAAAAGCAGCAATGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTCTCTTAATGCATCTTAGAGCAGCAAAAAAGCAGCAATGACAC  500

seq1  ACCATCCAGGCACACATAAAGGCAGCAATGATACCATCTAAAAGATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCAGGCACACATAAAGGCAGCAATGATACCATCTAAAAGATACTG  550

seq1  AAAAGGCATTTGACAAAAGTTATCATCCTTCTGATAAGGTTCATAAAAAT  600
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAGGCATTTGACAAAAGTTATCATCCTTCTGATAAGGTTCATAAAAAT  599

seq1  TACAAGTAGAAGGAACATATTCCAACTTAATATAGGTTACTGTGGTGATT  650
      ||| ||||||| ||||||||||||   ||||||||  |||||| ||||||
seq2  TAC-AGTAGAA-GAACATATTCCA--CTAATATAG--TACTGT-GTGATT  642

seq1  TGAATATGCTTGCCCCATGGGAGTGGTATT  680
      || ||||||||| |||||||||||||||||
seq2  TG-ATATGCTTG-CCCATGGGAGTGGTATT  670


seq1: chr11_27055255_27056364
seq2: B6Ng01-294O22.g_67_1171 (reverse)

seq1  GCTC-GTTCCATTTCCAATTTCATACTTCACTCATAGGCATCTGCTTTCC  49
      |||| ||||||||||||||||||||| |||||||||| |||| ||||| |
seq2  GCTCGGTTCCATTTCCAATTTCATAC-TCACTCATAGACATC-GCTTT-C  47

seq1  AACATCTCTAAGGAACTCTGTTCTCTC-TCACTAACAGCACATTACCTCA  98
      ||||||||||| ||  ||||||||||| |||||||||||||| || ||||
seq2  AACATCTCTAA-GACTTCTGTTCTCTCTTCACTAACAGCACA-TAACTCA  95

seq1  TTTGTATTGTTTACCTTGATCTCCCCAGTATAATTGAGGGTTCTCTATTT  148
       ||||| ||||||||| |||||||||||||||| |||||| |||||||||
seq2  ATTGTAATGTTTACCTGGATCTCCCCAGTATAA-TGAGGG-TCTCTATTT  143

seq1  CATAAGATCATTCCAAGAATGCACTTAATGTATTTCATATATATAAAGAA  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATAAGATCATTCCAAG-ATGCACTTAATGTATTTCATATATATAAAGAA  192

seq1  AGTACACAATAAGTTTTAACCACACATGCCCTTTCTCAACC-AATATGGA  247
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTACACAATAAGTTTTAACCACACATGCCCTTTCTCAACCAAATATGGA  242

seq1  TTTAAGATGTGGGGAGTAGGTAATAAATTTGATTTCCAGCCAGAACTCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATGTGGGGAGTAGGTAATAAATTTGATTTCCAGCCAGAACTCAC  292

seq1  ATTGAAAGATTACATGAAGATGATTGCATTTTCTTTTTTATCCCCCACTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGATTACATGAAGATGATTGCATTTTCTTTTTTATCCCCCACTT  342

seq1  TCCAACTAATTCCATTCAGTAACCCATATCTTTCTCTCTGCCTGGGGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTAATTCCATTCAGTAACCCATATCTTTCTCTCTGCCTGGGGGAA  392

seq1  AGCCACATCATTTTATTCTTGCTTCTGTAGGCATAAATGTAAATTCCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATCATTTTATTCTTGCTTCTGTAGGCATAAATGTAAATTCCCCT  442

seq1  AGAACTTTTTCTTTGAAATCTTTTTCTTCTGTATCTCCAGTAAGACAGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTTTCTTTGAAATCTTTTTCTTCTGTATCTCCAGTAAGACAGAG  492

seq1  TATATTCTGAACATGGAAAAACACAGCTACCTTTTATTCTCATGTTAAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTGAACATGGAAAAACACAGCTACCTTTTATTCTCATGTTAAGG  542

seq1  ATTAACTACTTACATTGACTTGCCTTTTCAGCTCTCATCTGAGAGACCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTACTTACATTGACTTGCCTTTTCAGCTCTCATCTGAGAGACCAG  592

seq1  ACCAATTCCATCTTAAGTTCAGACTCTGTCTTACAGAACCTGACCTGAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTCCATCTTAAGTTCAGACTCTGTCTTACAGAACCTGACCTGAGG  642

seq1  TTGAATTTGAGTTAACTAACAAGCCAGCACCTAGCACTGGTCTCTAGGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTGAGTTAACTAACAAGCCAGCACCTAGCACTGGTCTCTAGGTT  692

seq1  ACTCCCTAATAACCACCAATCAGGAGGAAAACAGAAGTTATAGTTGTACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTAATAACCACCAATCAGGAGGAAAACAGAAGTTATAGTTGTACC  742

seq1  TAAAAATAAGTATTTATAAATATTTATGGGTTAGCTCCCAGCACCAGCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAGTATTTATAAATATTTATGGGTTAGCTCCCAGCACCAGCCA  792

seq1  ATCATTGTAAAGTGCAACAAATTCCATAATAGCCCTCCAATCAGATGTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTAAAGTGCAACAAATTCCATAATAGCCCTCCAATCAGATGTGT  842

seq1  ACCAAGCTGGATAACCCCTTGCTTGTTTGCTTACTTGAAACTGGGCCTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTGGATAACCCCTTGCTTGTTTGCTTACTTGAAACTGGGCCTGG  892

seq1  GGCTTCACCCTCCTGTCCTGCTGCATCAGTGACAACAGTGTATCCTGAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACCCTCCTGTCCTGCTGCATCAGTGACAACAGTGTATCCTGAGC  942

seq1  TCAAGCTTGAATAAAGACCCTTGTGTAATTTCACAGAAAACAGCTCCTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTGAATAAAGACCCTTGTGTAATTTCACAGAAAACAGCTCCTTG  992

seq1  GTGATCTTTTGGGGCTCATGAAGTAGGCACAACATCTTGGTTCATTGTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTTTTGGGGCTCATGAAGTAGGCACAACATCTTGGTTCATTGTCT  1042

seq1  GAGAATACCAAGAATCCCAAGACTCCCAACCCAAAGGGTCTCAATACAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATACCAAGAATCCCAAGACTCCCAACCCAAAGGGTCTCAATACAGC  1092

seq1  CAGTAAGGAATTC  1110
      |||||||||||||
seq2  CAGTAAGGAATTC  1105


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