BAC Information

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BAC

Clone NameB6Ng01-295D01
Chromosome11 (Build37)
Map Location 107,709,766 - 107,822,240
singlet/doubletdoublet
Overlap geneCacng5, Prkca
Upstream geneSmurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295D01.bB6Ng01-295D01.g
ACCGA091121GA091122
length1,071942
definitionB6Ng01-295D01.b B6Ng01-295D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,709,766 - 107,710,839)(107,821,331 - 107,822,240)
sequence
gaattctatttagaaccctaatgttgactttgatgtgagctgtctctcct
ttacctcagtcctccaccaaagacctctcacagaaatagagcttgatatt
actgtgtgcatcggtttcctttcttattgctctgacaaagacaacgtaag
aaaggaagggaatatattggctcacagttcaaaccaaatatagcccatca
cgacaggtaaggtgtggccataggagtgtggggtggctggtcacactgca
tctgcagtcaggaagcagagatggacagccgctgatgttcagttggcagc
ctcctttagattcagtgcacggaactgtgcggctgtacttaaggtggata
ttagttttaagattctcagctgaggcattctagaaacttcctcacacaca
tgctcagaggtttgtttccatggtgattctaaatcccaccacgttgataa
gagtaaccactgcattgtgagtccagacaacaaagttttgtgactacttg
ataacttgcacttgcctttgccattgtaaatgacgtcatggtcgtttcta
ttgtcagcgcttcagtgattctccacggttccctctcttcctccacccac
catcacatagatggtcttctttttttttttttttttcttcttttcccccc
atctatttttccctggacatcttcctgtaccccatactggcccattctag
agctttctgaatggaagctaggctcctttgtctcaggagcagccccagtc
cagagtggggaaccccccccccccaagccactattttcacatgtagagaa
cagcacatgaaaaccaggcatgtatgggttcctccccaactcctgggaca
ataaataaaatcagatctctccacagagagactgggccaagtcctccttg
gaaacagttcacactccatgccagaaccacgacaaaccccagaggtgcca
ggagcttacatgaagtcagcccaagcccggctcctccatgagagaaatca
tcccttctgatggtgctgcatcttctagagctccacaccagagatacata
cgtcttctattagatgccatg
gaattcaaggtcagcgccctcctgtcctttctctttgccatggctgagga
ccttagagttgtccactgacgcctcatttcaaccagtgatggagagagag
agcaagggaacagtcatgggggatattttagaagcaggcctaagtggtgg
ccacttgactcccctcgactacagagagggccagggggctgagctgtctg
agagcttggctggaggcagtgggtttggtgaaaacttgaggcatctctga
ctttatgcctgttttgtcactttcctgttactgtgacaagacgtcatgac
caaagcaacttataacagaaagcgtttaattttggattcacagttccaga
gggttagagtccatgaccatcatggtagagagcatgacagcaggcaggca
tggtgctggagaaggacctgagagctcacatcattgcctacaagtaagag
acagagagagctaacagagaatgaaaaggcaacccccagggtcacccata
ctccctcaaggccacacctcctcctgcaaggccacgcctcccaatccttc
ccaaacagttctgccaactggagaccaagtattcaaacataggagcctat
gggagggactctttcatttcagatcaccacaaaacccaacttcttttttt
gtaaattcctagaactctgaggtagtgctggggacctttgacctttagag
gcaagaaccttaataatcaaaaaaggacaacatacccattctggggacaa
actgcctaccattctgagatggtacattcattgggccgtaatttatttgc
gcacttgaatgcttcctaccttacagtgaaggataaaacagacagaaaat
ctttcacctcccacagagctcacagctcagagtaaggagggagaaaacag
actaattagaaagatgaaaataatacgtttagggcattaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107709766_107710839
seq2: B6Ng01-295D01.b_48_1118

seq1  GAATTCTATTTAGAACCCTAATGTTGACTTTGATGTGAGCTGTCTCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTAGAACCCTAATGTTGACTTTGATGTGAGCTGTCTCTCCT  50

seq1  TTACCTCAGTCCTCCACCAAAGACCTCTCACAGAAATAGAGCTTGATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCAGTCCTCCACCAAAGACCTCTCACAGAAATAGAGCTTGATATT  100

seq1  ACTGTGTGCATCGGTTTCCTTTCTTATTGCTCTGACAAAGACAACGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGCATCGGTTTCCTTTCTTATTGCTCTGACAAAGACAACGTAAG  150

seq1  AAAGGAAGGGAATATATTGGCTCACAGTTCAAACCAAATATAGCCCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGGAATATATTGGCTCACAGTTCAAACCAAATATAGCCCATCA  200

seq1  CGACAGGTAAGGTGTGGCCATAGGAGTGTGGGGTGGCTGGTCACACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGGTAAGGTGTGGCCATAGGAGTGTGGGGTGGCTGGTCACACTGCA  250

seq1  TCTGCAGTCAGGAAGCAGAGATGGACAGCCGCTGATGTTCAGTTGGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTCAGGAAGCAGAGATGGACAGCCGCTGATGTTCAGTTGGCAGC  300

seq1  CTCCTTTAGATTCAGTGCACGGAACTGTGCGGCTGTACTTAAGGTGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAGATTCAGTGCACGGAACTGTGCGGCTGTACTTAAGGTGGATA  350

seq1  TTAGTTTTAAGATTCTCAGCTGAGGCATTCTAGAAACTTCCTCACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTAAGATTCTCAGCTGAGGCATTCTAGAAACTTCCTCACACACA  400

seq1  TGCTCAGAGGTTTGTTTCCATGGTGATTCTAAATCCCACCACGTTGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAGGTTTGTTTCCATGGTGATTCTAAATCCCACCACGTTGATAA  450

seq1  GAGTAACCACTGCATTGTGAGTCCAGACAACAAAGTTTTGTGACTACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAACCACTGCATTGTGAGTCCAGACAACAAAGTTTTGTGACTACTTG  500

seq1  ATAACTTGCACTTGCCTTTGCCATTGTAAATGACGTCATGGTCGTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTGCACTTGCCTTTGCCATTGTAAATGACGTCATGGTCGTTTCTA  550

seq1  TTGTCAGCGCTTCAGTGATTCTCCACGGTTCCCTCTCTTCCTCCACCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCGCTTCAGTGATTCTCCACGGTTCCCTCTCTTCCTCCACCCAC  600

seq1  CATCACATAGATGGTCTTCTTTTTTTTTTTTTTTTTCTTCTTTTCCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATAGATGGTCTTCTTTTTTTTTTTTTTTTTCTTCTTTTCCCCCC  650

seq1  ATCTATTTTTCCCTGGACATCTTCCTGTACCCCATACTGGCCCATTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTTCCCTGGACATCTTCCTGTACCCCATACTGGCCCATTCTAG  700

seq1  AGCTTTCTGAATGGAAGCTAGGCTCCTTTGTCTCAGGAGCAGCCCCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTGAATGGAAGCTAGGCTCCTTTGTCTCAGGAGCAGCCCCAGTC  750

seq1  CAGAGTGGGGAA-CCCCCCCCCCCAAGCCACTATTTTCACATGTAGAGAA  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGGGAACCCCCCCCCCCCAAGCCACTATTTTCACATGTAGAGAA  800

seq1  CAGCACATGAAAACCAGGCATGTATGGGTTCCTCCCCAACTCCTGGGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACATGAAAACCAGGCATGTATGGGTTCCTCCCCAACTCCTGGGACA  850

seq1  ATAAATAAAATCAGATCTCTCCACAGAGAGACT-GGCCAAGTCCTCCTTG  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAAATAAAATCAGATCTCTCCACAGAGAGACTGGGCCAAGTCCTCCTTG  900

seq1  GAAACAGTTCACACTCCATGCCAGAAACCACGACAAA-CCCAGAGGTGCC  947
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GAAACAGTTCACACTCCATGCCAG-AACCACGACAAACCCCAGAGGTGCC  949

seq1  AGGAGCTTACATGAAGTCAG-CCAAGGCCGGCT-CTCCATGAGGAGAAAA  995
      |||||||||||||||||||| ||||| |||||| |||||||| |||||| 
seq2  AGGAGCTTACATGAAGTCAGCCCAAGCCCGGCTCCTCCATGA-GAGAAA-  997

seq1  TTCATTCCCTCTGGATGGTGGCTGCCATCTTCTAAGAGCT-CACACCAGA  1044
       |||| || ||| |||||| |||| |||||||| |||||| |||||||||
seq2  -TCATCCCTTCT-GATGGT-GCTG-CATCTTCT-AGAGCTCCACACCAGA  1042

seq1  GATACATACGGTCTCTATTAAGATGCCATG  1074
      ||||||||||   |||||| ||||||||||
seq2  GATACATACGTCTTCTATT-AGATGCCATG  1071

seq1: chr11_107821331_107822240
seq2: B6Ng01-295D01.g_68_989 (reverse)

seq1  TATTTTCATC-TTCTAATTAGTCTGTTTTCTCCCTCCTT-CTCTGAGCTG  48
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TATTTTCATCTTTCTAATTAGTCTGTTTTCTCCCTCCTTACTCTGAGCTG  50

seq1  TGAGCTCTGT-GGAGGTG-AAGA-TTTCTGTCTGTTTTATCC-TCACTGT  94
      |||||||||| ||||||| |||| |||||||||||||||||| |||||||
seq2  TGAGCTCTGTGGGAGGTGAAAGATTTTCTGTCTGTTTTATCCTTCACTGT  100

seq1  AA-GTAGGAAGCATTC-AGTGCGCAAATAAATTACGG-CCAATGAATGTA  141
      || ||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  AAGGTAGGAAGCATTCAAGTGCGCAAATAAATTACGGCCCAATGAATGTA  150

seq1  CCATCTCAGAATGGTAGGCAGTTTGTCCCCAGAATGGGTATGTTGTCCTT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAGAATGGTAGGCAGTTTGTCCCCAGAATGGGTATGTTGTCCTT  200

seq1  TTTTGATTATTAAGGTTCTTGCCTCT-AAGGTC-AAGGTCCCCAGCACTA  239
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  TTTTGATTATTAAGGTTCTTGCCTCTAAAGGTCAAAGGTCCCCAGCACTA  250

seq1  CCTCAGAGTTCTAGGAATTTACAAAAAAAGAAGTTGGGTTTTGTGGTGAT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGTTCTAGGAATTTACAAAAAAAGAAGTTGGGTTTTGTGGTGAT  300

seq1  CTG-AATGAAAGAGTCCCTCCCATAGGCTCCTATGTTTGAATACTTGGTC  338
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGAAAGAGTCCCTCCCATAGGCTCCTATGTTTGAATACTTGGTC  350

seq1  TCCAGTTGGCAGAACTGTTTGGGAAGGATTGGGAGGCGTGGCCTTGCAGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGGCAGAACTGTTTGGGAAGGATTGGGAGGCGTGGCCTTGCAGG  400

seq1  AGGAGGTGTGGCCTTGAGGGAGTATGGGTGACCCTGGGGGTTGCCTTTTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGTGGCCTTGAGGGAGTATGGGTGACCCTGGGGGTTGCCTTTTC  450

seq1  ATTCTCTGTTAGCTCTCTCTGTCTCTTACTTGTAGGCAATGATGTGAGCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGTTAGCTCTCTCTGTCTCTTACTTGTAGGCAATGATGTGAGCT  500

seq1  CTCAGGTCCTTCTCCAGCACCATGCCTGCCTGCTGTCATGCTCTCTACCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCCTTCTCCAGCACCATGCCTGCCTGCTGTCATGCTCTCTACCA  550

seq1  TGATGGTCATGGACTCTAACCCTCTGGAACTGTGAATCCAAAATTAAACG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTCATGGACTCTAACCCTCTGGAACTGTGAATCCAAAATTAAACG  600

seq1  CTTTCTGTTATAAGTTGCTTTGGTCATGACGTCTTGTCACAGTAACAGGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTTATAAGTTGCTTTGGTCATGACGTCTTGTCACAGTAACAGGA  650

seq1  AAGTGACAAAACAGGCATAAAGTCAGAGATGCCTCAAGTTTTCACCAAAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAAAACAGGCATAAAGTCAGAGATGCCTCAAGTTTTCACCAAAC  700

seq1  CCACTGCCTCCAGCCAAGCTCTCAGACAGCTCAGCCCCCTGGCCCTCTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCTCCAGCCAAGCTCTCAGACAGCTCAGCCCCCTGGCCCTCTCT  750

seq1  GTAGTCGAGGGGAGTCAAGTGGCCACCACTTAGGCCTGCTTCTAAAATAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCGAGGGGAGTCAAGTGGCCACCACTTAGGCCTGCTTCTAAAATAT  800

seq1  CCCCCATGACTGTTCCCTTGCTCTCTCTCTCCATCACTGGTTGAAATGAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGACTGTTCCCTTGCTCTCTCTCTCCATCACTGGTTGAAATGAG  850

seq1  GCGTCAGTGGACAACTCTAAGGTCCTCAGCCATGGCAAAGAGAAAGGACA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAGTGGACAACTCTAAGGTCCTCAGCCATGGCAAAGAGAAAGGACA  900

seq1  GGAGGGCGCTGACCTTGAATTC  910
      ||||||||||||||||||||||
seq2  GGAGGGCGCTGACCTTGAATTC  922