BAC Information

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BAC

Clone NameB6Ng01-295F11
Chromosome11 (Build37)
Map Location 57,761,193 - 57,840,645
singlet/doubletdoublet
Overlap geneLOC624605, Larp1
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1
Downstream geneLOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295F11.bB6Ng01-295F11.g
ACCGA091232GA091233
length1,109581
definitionB6Ng01-295F11.b B6Ng01-295F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,839,536 - 57,840,645)(57,761,193 - 57,761,773)
sequence
gaattcacaggctgttccagcatttacactgctccaacagcatctacact
gctcacagccactcatgctttccaggtacttatcatggtcattgtagggg
caaactacctgcctccttcaaaggtaaacagtgctcagggaagcagccta
acgtgtttcactctgagaacaaaagaacaaagcaacaaggaaactagctc
ctgtgcatcttgatgacaggaggctaggtttccatttggaggctgagcag
aagtgcacagggagtcatgcaggggagtctcccatctacctattctagcc
ctgctggtcagcatctaccaagggtgtactgggggtttggagacactcct
tggacaagcacagatggccttttgccgccctccacggatttcttctatag
agacttccaaagccaaagtaggctgtgggaactgagaaggcagcaggtct
gtatggaagaacactggtcctgcaaggtagcaaaggtaagaggtatgctt
acactgccaggcttctctcagctcatgtgaattctgactctgtgacctcc
taccgagcttaatgaaccaaaagggcgatgaaagagtgagggctacaggt
gtgtgtacttcccctacagctgtcaagcactgactaaatagagttcctac
tttccttctcccaggcctgctggaagctagagaacttccctcatgcgtgc
taagcaagcactctaccaactgagtaacatttccagcccactgtattgta
tttctaacaggcactactggtttagaaaaagatgtaatccctcttggtgc
ttactagtactcatggtggttggtgggacacaatgccaaggttttccttt
tgctaaatctatttggacatttttgatgagttgttattgcctgattttaa
aaagatttttccacttcaaaaagctaaaaggcccagcacattatagctgg
tggcccacagaacatcacaagcctggagaaccaagcccatccttccactc
ttcagaccaggtccaaggtactagccctccttaccgtgttaacttaaaaa
gagcagctcttggggaagaaagccagttcctcaatggcagattctaagtt
cctcatacc
gaattccaggacctaggaagacatggccttaaaaggctcacagagagagc
atcacgaaagcccacaacaaagcagaggctaacaaacacacacacacaca
cacacacacacacacacacacacacacgcacgcacgcacacacacgcacg
catgcatgcacgcacgaacgcacgtgcacagaggatgttaggccaaaggt
gagcagattcttgttttacaaagaaattggaaatgtctacacggttggct
gatctggaggttctgtttgatttgtttggttcttttaagactactctctt
taatcccagcactcgggaggcagaaacaggtgaatttctgagttggaggc
cagcctggtctacagagtgagttccaggacagccagggctacacagagaa
accctgtctcaggaaaaaaaaaaaaaaaaagactattctgtgtagaccaa
gttgaccttcaactcacagccatcctcctgtctctgcctctccagtgctg
ggattacaattatgtgccactatacccagcttggttttttgtttgtttgt
ttgtttgtttggttggttggttggttggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57839536_57840645
seq2: B6Ng01-295F11.b_49_1157 (reverse)

seq1  GGTATGAGGAACTTTGGATCCTGCCATGGAG--ACTTGGCCTTTCTTCCC  48
      |||||||||||||| | || ||||||| |||  |||  | ||||||||||
seq2  GGTATGAGGAACTTAGAAT-CTGCCATTGAGGAACT--GGCTTTCTTCCC  47

seq1  CAAGAGCTGCTCTTTTT-AGTT-ACACGGTAGGGAGGGCTAGTGACCTTG  96
      ||||||||||||||||| |||| |||||||| ||||||||||| ||||| 
seq2  CAAGAGCTGCTCTTTTTAAGTTAACACGGTAAGGAGGGCTAGT-ACCTT-  95

seq1  GGACCTGGTCTGAAGAGTGGGAAGGATGGGC-TGGTTCTCCAGGCTTTGT  145
      |||||||||||||||||| |||||||||||| ||||||||||||| ||||
seq2  GGACCTGGTCTGAAGAGT-GGAAGGATGGGCTTGGTTCTCCAGGC-TTGT  143

seq1  GATGTTCTGTGGGCCACCAGCTATTATGTGCTGGGCCTTTTAGCTTTTTG  195
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GATGTTCTGTGGGCCACCAGCTATAATGTGCTGGGCCTTTTAGCTTTTTG  193

seq1  AAGTGG-AAAATCTTTTTAAAATCAGGCAATAACAACTCATCAAAAATGT  244
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAAAATCTTTTTAAAATCAGGCAATAACAACTCATCAAAAATGT  243

seq1  CCAAATAGATTTTAGCAAAAGGAAAACCTTGGCATTGTGTCCCACCAACC  294
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGA-TTTAGCAAAAGGAAAACCTTGGCATTGTGTCCCACCAACC  292

seq1  ACCATGAGTACTAGTAAGCACCAAGA-GGATTACATCTTTTTCTAAACCA  343
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCATGAGTACTAGTAAGCACCAAGAGGGATTACATCTTTTTCTAAACCA  342

seq1  GTAGTGCCTGTTAGAAATACAATACAGTGGGCTGGAAATGTTACTCAGTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCCTGTTAGAAATACAATACAGTGGGCTGGAAATGTTACTCAGTT  392

seq1  GGTAGAGTGCTTGCTTAGCACGCATGAGGGAAGTTCTCTAGCTTCCAGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTGCTTGCTTAGCACGCATGAGGGAAGTTCTCTAGCTTCCAGCA  442

seq1  GGCCTGGGAGAAGGAAAGTAGGAACTCTATTTAGTCAGTGCTTGACAGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGAGAAGGAAAGTAGGAACTCTATTTAGTCAGTGCTTGACAGCT  492

seq1  GTAGGGGAAGTACACACACCTGTAGCCCTCACTCTTTCATCGCCCTTTTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGAAGTACACACACCTGTAGCCCTCACTCTTTCATCGCCCTTTTG  542

seq1  GTTCATTAAGCTCGGTAGGAGGTCACAGAGTCAGAATTCACATGAGCTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAAGCTCGGTAGGAGGTCACAGAGTCAGAATTCACATGAGCTGA  592

seq1  GAGAAGCCTGGCAGTGTAAGCATACCTCTTACCTTTGCTACCTTGCAGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCTGGCAGTGTAAGCATACCTCTTACCTTTGCTACCTTGCAGGA  642

seq1  CCAGTGTTCTTCCATACAGACCTGCTGCCTTCTCAGTTCCCACAGCCTAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTCTTCCATACAGACCTGCTGCCTTCTCAGTTCCCACAGCCTAC  692

seq1  TTTGGCTTTGGAAGTCTCTATAGAAGAAATCCGTGGAGGGCGGCAAAAGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTTGGAAGTCTCTATAGAAGAAATCCGTGGAGGGCGGCAAAAGG  742

seq1  CCATCTGTGCTTGTCCAAGGAGTGTCTCCAAACCCCCAGTACACCCTTGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTGCTTGTCCAAGGAGTGTCTCCAAACCCCCAGTACACCCTTGG  792

seq1  TAGATGCTGACCAGCAGGGCTAGAATAGGTAGATGGGAGACTCCCCTGCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCTGACCAGCAGGGCTAGAATAGGTAGATGGGAGACTCCCCTGCA  842

seq1  TGACTCCCTGTGCACTTCTGCTCAGCCTCCAAATGGAAACCTAGCCTCCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTGTGCACTTCTGCTCAGCCTCCAAATGGAAACCTAGCCTCCT  892

seq1  GTCATCAAGATGCACAGGAGCTAGTTTCCTTGTTGCTTTGTTCTTTTGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAAGATGCACAGGAGCTAGTTTCCTTGTTGCTTTGTTCTTTTGTT  942

seq1  CTCAGAGTGAAACACGTTAGGCTGCTTCCCTGAGCACTGTTTACCTTTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTGAAACACGTTAGGCTGCTTCCCTGAGCACTGTTTACCTTTGA  992

seq1  AGGAGGCAGGTAGTTTGCCCCTACAATGACCATGATAAGTACCTGGAAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGGTAGTTTGCCCCTACAATGACCATGATAAGTACCTGGAAAG  1042

seq1  CATGAGTGGCTGTGAGCAGTGTAGATGCTGTTGGAGCAGTGTAAATGCTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGGCTGTGAGCAGTGTAGATGCTGTTGGAGCAGTGTAAATGCTG  1092

seq1  GAACAGCCTGTGAATTC  1110
      |||||||||||||||||
seq2  GAACAGCCTGTGAATTC  1109

seq1: chr11_57761193_57761773
seq2: B6Ng01-295F11.g_70_650

seq1  GAATTCCAGGACCTAGGAAGACATGGCCTTAAAAGGCTCACAGAGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACCTAGGAAGACATGGCCTTAAAAGGCTCACAGAGAGAGC  50

seq1  ATCACGAAAGCCCACAACAAAGCAGAGGCTAACAAACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGAAAGCCCACAACAAAGCAGAGGCTAACAAACACACACACACACA  100

seq1  CACACACACACACACACACACACACACGCACGCACGCACACACACGCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACGCACGCACGCACACACACGCACG  150

seq1  CATGCATGCACGCACGAACGCACGTGCACAGAGGATGTTAGGCCAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCACGCACGAACGCACGTGCACAGAGGATGTTAGGCCAAAGGT  200

seq1  GAGCAGATTCTTGTTTTACAAAGAAATTGGAAATGTCTACACGGTTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATTCTTGTTTTACAAAGAAATTGGAAATGTCTACACGGTTGGCT  250

seq1  GATCTGGAGGTTCTGTTTGATTTGTTTGGTTCTTTTAAGACTACTCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGAGGTTCTGTTTGATTTGTTTGGTTCTTTTAAGACTACTCTCTT  300

seq1  TAATCCCAGCACTCGGGAGGCAGAAACAGGTGAATTTCTGAGTTGGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTCGGGAGGCAGAAACAGGTGAATTTCTGAGTTGGAGGC  350

seq1  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  400

seq1  ACCCTGTCTCAGGAAAAAAAAAAAAAAAAAGACTATTCTGTGTAGACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAGGAAAAAAAAAAAAAAAAAGACTATTCTGTGTAGACCAA  450

seq1  GTTGACCTTCAACTCACAGCCATCCTCCTGTCTCTGCCTCTCCAGTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCTTCAACTCACAGCCATCCTCCTGTCTCTGCCTCTCCAGTGCTG  500

seq1  GGATTACAATTATGTGCCACTATACCCAGCTTGGTTTTTTGTTTGTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACAATTATGTGCCACTATACCCAGCTTGGTTTTTTGTTTGTTTGT  550

seq1  TTGTTTGTTTGGTTGGTTGGTTGGTTGGTTG  581
      |||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGGTTGGTTGGTTGGTTGGTTG  581