BAC Information

Click to search

BAC

Clone NameB6Ng01-296G11
Chromosome11 (Build37)
Map Location 24,659,791 - 24,660,958
singlet/doubletsinglet
Overlap genenone
Upstream geneRel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282, 5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296G11.bB6Ng01-296G11.g
ACCGA092024GA092025
length2841,175
definitionB6Ng01-296G11.b B6Ng01-296G11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aaagtgctcaaccctgaaatcatatacatgcaagtagcattatatgtatt
aaacaggttgtatgtatacatgtgtacacacacatttccacacacatgca
catgcacacacatgcatatgcacacacaccatatatatatatacatatat
atatggtgtgtgtgcatatgcatgtgtgtgcatgtgcatgtgtgtggaaa
tgtgtgtgtacacatgtatacatacaacctgtttaatacatataatgcta
cttgcatgtatatgatttcagggttgagcacttt

gaattccttatatttgcccaaccgtgatcttaacccaccacctgatacca
acctgtatcaagattttaaatattttcttacctgaatatttctgaacttt
tacctgtatgccatctcttgtctcatatatagttgcacacaatgtattta
ctttaactgtagatatttggatcctttgtttctttctttgcagtgttcac
ccttgtccttacttcctctctgatgaaaactaagagtctgttcttcagcc
ccgcccagttcataactctatgatatatatgtttcactttagaacctgaa
ggccatttcactccacttgctatgagattatattatggaaaagttggttt
gagacataaattattgggggacatccttggggtcttttcttgaagcccaa
aggactaagtcaaaaagaaaccactttcctcttgcaatgcagtctgggcc
agaaacattatgttaattgaagtaatgcccagggacattacctttcttga
tttatctgtgctttatttgtattttacagtcttttaaaagattatggcag
gatgatgaaataatacaactgactttttatataaggatttaatctatacc
acatgcaattgcgcacaattttatcactcccttctttatcattctcttgt
cgtaggtttctggaattgtctttctgaatatattatttatagaatgaagt
ggaaatgaaaataataataagtacttcttgatattttgggtctagtcttt
tgaatagcattagaaatagtaaatgttggaatggatggtaattgcaatat
ttaaaaactgaacagtgacgcataattatcagtgtggcttgggtggcttg
tgtgtactctcatgtaattttaaaagttagtttatagaataaacaagtca
cacttttctattgtcaaaaccttttcaaagccttaagtcctgttgtcttg
gaaaacaagtttgaccatctggctttgcatacattatttacctgactgtt
cattctgctacctggagtattctttttttatcagcagaaagttgtgtatg
actgatggtgtgtgtacacttatgcttgtgtagtgtgttcttatgggaag
gtgaagattcagcttcagatccaaaggcctgtgactttgccataccattt
tgacctctcttagggggaagaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24659791_24660958
seq2: B6Ng01-296G11.g_68_1242

seq1  GAATTCCTTATATTTGCCCAACCGTGATCTTAACCCACCACCTGATACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATATTTGCCCAACCGTGATCTTAACCCACCACCTGATACCA  50

seq1  ACCTGTATCAAGATTTTAAATATTTTCTTACCTGAATATTTCTGAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTATCAAGATTTTAAATATTTTCTTACCTGAATATTTCTGAACTTT  100

seq1  TACCTGTATGCCATCTCTTGTCTCATATATAGTTGCACACAATGTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTATGCCATCTCTTGTCTCATATATAGTTGCACACAATGTATTTA  150

seq1  CTTTAACTGTAGATATTTGGATCCTTTGTTTCTTTCTTTGCAGTGTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTGTAGATATTTGGATCCTTTGTTTCTTTCTTTGCAGTGTTCAC  200

seq1  CCTTGTCCTTACTTCCTCTCTGATGAAAACTAAGAGTCTGTTCTTCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCCTTACTTCCTCTCTGATGAAAACTAAGAGTCTGTTCTTCAGCC  250

seq1  CCGCCCAGTTCATAACTCTATGATATATATGTTTCACTTTAGAACCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCAGTTCATAACTCTATGATATATATGTTTCACTTTAGAACCTGAA  300

seq1  GGCCATTTCACTCCACTTGCTATGAGATTATATTATGGAAAAGTTGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTTCACTCCACTTGCTATGAGATTATATTATGGAAAAGTTGGTTT  350

seq1  GAGACATAAATTATTGGGGGACATCCTTGGGGTCTTTTCTTGAAGCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAAATTATTGGGGGACATCCTTGGGGTCTTTTCTTGAAGCCCAA  400

seq1  AGGACTAAGTCAAAAAGAAACCACTTTCCTCTTGCAATGCAGTCTGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAAGTCAAAAAGAAACCACTTTCCTCTTGCAATGCAGTCTGGGCC  450

seq1  AGAAACATTATGTTAATTGAAGTAATGCCCAGGGACATTACCTTTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTATGTTAATTGAAGTAATGCCCAGGGACATTACCTTTCTTGA  500

seq1  TTTATCTGTGCTTTATTTGTATTTTACAGTCTTTTAAAAGATTATGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGTGCTTTATTTGTATTTTACAGTCTTTTAAAAGATTATGGCAG  550

seq1  GATGATGAAATAATACAACTGACTTTTTATATAAGGATTTAATCTATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGAAATAATACAACTGACTTTTTATATAAGGATTTAATCTATACC  600

seq1  ACATGCAATTGCGCACAATTTTATCACTCCCTTCTTTATCATTCTCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAATTGCGCACAATTTTATCACTCCCTTCTTTATCATTCTCTTGT  650

seq1  CGTAGGTTTCTGGAATTGTCTTTCTGAATATATTATTTATAGAATGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGTTTCTGGAATTGTCTTTCTGAATATATTATTTATAGAATGAAGT  700

seq1  GGAAATGAAAATAATAATAAGTACTTCTTGATATTTTGGGTCTAGTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAAAATAATAATAAGTACTTCTTGATATTTTGGGTCTAGTCTTT  750

seq1  TGAATAGCATTAGAAATAGTAAATGTTGGAATGGATGGTAATTGCAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCATTAGAAATAGTAAATGTTGGAATGGATGGTAATTGCAATAT  800

seq1  TTAAAAACTGAACAGTGACGCATAATTATCAGTGTGGCTTGGGTGGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACTGAACAGTGACGCATAATTATCAGTGTGGCTTGGGTGGCTTG  850

seq1  TGTGTACTCTCATGTAATTTTAAAAGTTAGTTTATAGAATAAACAAGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTCTCATGTAATTTTAAAAGTTAGTTTATAGAATAAACAAGTCA  900

seq1  CACTTTTCTATTGTCAAAACCTTTTCAAAGCCTTAAGTCCTGTTGTCT--  948
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CACTTTTCTATTGTCAAAACCTTTTCAAAGCCTTAAGTCCTGTTGTCTTG  950

seq1  GGAGACAAGTTTGACCATCTGGCTTTGCATACATTTATTTACCTGACTGT  998
      | | ||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  GAAAACAAGTTTGACCATCTGGCTTTGCATACA-TTATTTACCTGACTG-  998

seq1  TTCATTCTGCTACCT-GAGTA-TCTTTTTTTATCAGCAGAAAGTTGTGTA  1046
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  TTCATTCTGCTACCTGGAGTATTCTTTTTTTATCAGCAGAAAGTTGTGTA  1048

seq1  TGACTGAT-GTGTGTGTACACTAATGCTTGTGTAGTGTGT--CTAT-GGA  1092
      |||||||| ||||||||||||| |||||||||||||||||   ||| |||
seq2  TGACTGATGGTGTGTGTACACTTATGCTTGTGTAGTGTGTTCTTATGGGA  1098

seq1  AGGTGAAGATTTCAGGTTTCAAGAATCAAA-GCCTGTGACTTTTGCATA-  1140
      ||||||||| ||||| ||   |||  |||| ||||||||||||  |||| 
seq2  AGGTGAAGA-TTCAGCTT--CAGATCCAAAGGCCTGTGACTTTGCCATAC  1145

seq1  CAATTTGA---CTCTTAGGGGGAAAAAAGGC  1168
      || |||||   ||||||||||| || |||||
seq2  CATTTTGACCTCTCTTAGGGGG-AAGAAGGC  1175


| Home | SequenceCutter | Blast | Download |