BAC Information

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BAC

Clone NameB6Ng01-296H02
Chromosome11 (Build37)
Map Location 47,591,844 - 47,592,983
singlet/doubletsinglet
Overlap genenone
Upstream geneHavcr1, Timd4, Sgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296H02.bB6Ng01-296H02.g
ACCGA092054GA092055
length1,1331,177
definitionB6Ng01-296H02.b B6Ng01-296H02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgtggacctcacactggtcttaaattccctatgtctctgcct
tgaatgttgtcttctctatatcacatcttcaatgttgatattagtagtct
gtacaacacaacatattgggcaaaacccaaaactttcataagcttaaatt
ttagtaagcacaaaaatacacacaccgttatttattaagcatttcctgtt
gggaaatctttcctttttttttttttttcaagttttttgctattgaaaat
aattccaccaggaatatctttccatatagcttatattctgtttatccaac
tttgttgcttagatgaaattgttagacaaaggaatcactgagtcacagga
taccttaactttgtagaaaacagtgcatgtatcctttattttgactttac
acatcaacttgtcccacaaatatagtttaaaaagacatgtgactcacctc
acagaacaacttaagttcattgctagtcagttactaatggattgtgttac
ctcaaactttgctacatttgaattatacacttgagcatttgtaatcaatt
tcctgcatgcatacttaaaccactgcatcaccaaaataaagggcaggtgg
ggtaaagtgcctggactatgatactgaaataaatatgaagctaaggaaat
ggaagatggtgagtgcttctcatcaggcataaggacccatgtttgcctcc
ccaatgcacatagaaatttaaatgtcagaatggatacgatagtcccagca
cagggaggcagagagaggaggaagactgggactttctagtcagacatcca
gtcaaatcagtgagctccatgtcctgtgagatactgtgtctcaagaagca
agagaagacacctaatatcaatctgtggtatgttttatacacacacacac
acacacacacacacgcactcacacacactcacatatcgctcagacgacac
tcgcacacaatctaagatttttcatagaggatgagggaggttgagagcag
cccccaagcctccaacttctgttctttgttagagcctcagaatacaatct
tcaaggaaataatgcctttgctgaatgctcatagagcttccaggccacac
tggaaataacatctgctgactcatctatgcaaa
gaattctcacctgaggaataccgaatggcagataagcacccgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatgccccaactggtaagaaggacacatgctccactatgttcatagc
agccttatttataatagccagaagctggaaagaacccagatgcccctcaa
cagaggaatggatacagaaaatgtggtacatctacacaatggagtactac
tcagctattaaaaagaatgaatttatgaaattcctagccaaatggatgga
cctggagggcatcatcctgagtgaggtaacacattcacaaaggaagtcac
acaatatgtactcactgataagtggatattagcccaaaacctaggatacc
caagatataagatacaatttcctaaacacatgaaactcaagaaaaatgaa
gactgaagcgtggacactatgcccctccttagaagtgggaacaaaacacc
cttggacggagttacagagacaaagtttggagctgagatgaaaggatgga
ccatgtagagactgccatatccagggatccaccccataatcagcatccaa
acgttgacaccattgcatacactagcaagattttatcgaaaggacccaga
tgtagctgtctcttgtgagactatgccagggcctagcaaacacagaagtg
gatgctcacagtcagctaatagatggatcacagggctcccaatggaggag
ctagatgaaagtacccgagagctaaagggcatctgcaaccctataggtgg
atcagcatatgactacccagtacccgcagctcttgctctagctgcctatg
tatcaaagatggactagttcagtcatcactgaagaagagccaatgacacg
ctaactttaatgcctggacatgaatcgcaggtccaaaatggggagtgcca
ggtatgcgtcaagtgcgggccgtctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47591844_47592983
seq2: B6Ng01-296H02.b_43_1175

seq1  GAATTCATTGTAAACCTCACACTGGTCTTAAATTCCCTATGTCTCTGCCT  50
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGGACCTCACACTGGTCTTAAATTCCCTATGTCTCTGCCT  50

seq1  TGAATGTTGTCTTCTCTATATCACATCTTCAATGTTGATATTAGTAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTGTCTTCTCTATATCACATCTTCAATGTTGATATTAGTAGTCT  100

seq1  GTACAACACAACATATTGGGCAAAACCCAAAACTTTCATAAGCTTAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACACAACATATTGGGCAAAACCCAAAACTTTCATAAGCTTAAATT  150

seq1  TTAGTAAGCACAAAAATACACACACCGTTATTTATTAAGCATTTCCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGCACAAAAATACACACACCGTTATTTATTAAGCATTTCCTGTT  200

seq1  GGGAAATCTTTCCTTTTTTTTTTTTTTTCAAGTTTTTTGCTATTGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCTTTCCTTTTTTTTTTTTTTTCAAGTTTTTTGCTATTGAAAAT  250

seq1  AATTCCACCAGGAATATCTTTCCATATAGCTTATATTCTGTTTATCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACCAGGAATATCTTTCCATATAGCTTATATTCTGTTTATCCAAC  300

seq1  TTTGTTGCTTAGATGAAATTGTTAGACAAAGGAATCACTGAGTCACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTTAGATGAAATTGTTAGACAAAGGAATCACTGAGTCACAGGA  350

seq1  TACCTTAACATTGTAGAAAACAGTGCATGTATCCTTTATTTTGACTTTAC  400
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAACTTTGTAGAAAACAGTGCATGTATCCTTTATTTTGACTTTAC  400

seq1  ACATCAACTTGTCCCACAAATATAGTTTAAAAAGACATGTGACTCACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACTTGTCCCACAAATATAGTTTAAAAAGACATGTGACTCACCTC  450

seq1  ACAGAACAACTTAAGTTCATTGCTAGTCAGTTACTAATGTATTGTGTTAG  500
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  ACAGAACAACTTAAGTTCATTGCTAGTCAGTTACTAATGGATTGTGTTAC  500

seq1  CTCAAACTTTGCTACATTTGAATTATACACTTGAGCATTTGTAATCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTTTGCTACATTTGAATTATACACTTGAGCATTTGTAATCAATT  550

seq1  TCCTGCATGCATACTTAAACCACTGCATCACCAAAATAAAGGGCAGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATGCATACTTAAACCACTGCATCACCAAAATAAAGGGCAGGTGG  600

seq1  GGTAAAGTGCCTGGACTATGATACTGAAATAAATATGAGGCTAAGGAAAT  650
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGTAAAGTGCCTGGACTATGATACTGAAATAAATATGAAGCTAAGGAAAT  650

seq1  GGAAGATGGTGAGTGCTTCTCATCAGGCATAAGGACCCATGTTTGCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGGTGAGTGCTTCTCATCAGGCATAAGGACCCATGTTTGCCTCC  700

seq1  CCAATGCACATAGAAATTTAAATGTCACAATGTATACAATAGTCCCAGCA  750
      ||||||||||||||||||||||||||| |||| |||| ||||||||||||
seq2  CCAATGCACATAGAAATTTAAATGTCAGAATGGATACGATAGTCCCAGCA  750

seq1  CAGGGAGGCAGAGAGAGGAGGAAGACTGGGACTTTCTAGTCAGACAATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGGGAGGCAGAGAGAGGAGGAAGACTGGGACTTTCTAGTCAGAC-ATCC  799

seq1  AGTCAAATCAGTGAGCTCCATGTCCTGTGAGATACTCTGTCTCAA-AAGC  849
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  AGTCAAATCAGTGAGCTCCATGTCCTGTGAGATACTGTGTCTCAAGAAGC  849

seq1  AAGAGAAGACACCTAATATCAATCTGTGGTATGTTTTATACACACACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGACACCTAATATCAATCTGTGGTATGTTTTATACACACACACA  899

seq1  CACACACACACACACACACACACACACACACACACA-CACACAGACACAC  948
      ||||||||||||||| ||| ||||||||| |||| | | | |||||  ||
seq2  CACACACACACACACGCACTCACACACACTCACATATCGCTCAGAC-GAC  948

seq1  ACACACACACAACCTAAAGATTTTTCATAGAGGATGAAGGAGGTTGAAGA  998
      || | ||||||| || ||||||||||||||||||||| |||||||| |||
seq2  ACTCGCACACAATCT-AAGATTTTTCATAGAGGATGAGGGAGGTTG-AGA  996

seq1  GCAGCCCCCAAGCCCCCAACTTCTG-TCTTTG-TAGAAGCTCAGAATACA  1046
      |||||||||||||| |||||||||| |||||| ||||  |||||||||||
seq2  GCAGCCCCCAAGCCTCCAACTTCTGTTCTTTGTTAGAGCCTCAGAATACA  1046

seq1  AACTTCAAGGAAATAATGCCTTTGCTGATATGCTCATAGAGGCTTCCAAG  1096
      | |||||||||||||||||||||||||| ||||||||||| |||||| ||
seq2  ATCTTCAAGGAAATAATGCCTTTGCTGA-ATGCTCATAGA-GCTTCC-AG  1093

seq1  CCCACACT-GAAATAACATCCTGCTGAACTCATCTTAAATGCAAA  1140
       ||||||| |||||||||| |||||| ||||||||   |||||||
seq2  GCCACACTGGAAATAACAT-CTGCTG-ACTCATCT---ATGCAAA  1133