BAC Information

Click to search

BAC

Clone NameB6Ng01-297F16
Chromosome11 (Build37)
Map Location 95,039,518 - 95,176,272
singlet/doubletdoublet
Overlap geneLOC100039437, Tac4, Myst2
Upstream geneTob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4
Downstream gene5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297F16.bB6Ng01-297F16.g
ACCGA092730GA092731
length1,191725
definitionB6Ng01-297F16.b B6Ng01-297F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,039,518 - 95,040,706)(95,175,548 - 95,176,272)
sequence
gaattcagttatgaaagaataagttgtgttatttttaaataaaaaaataa
taacaacaacaataataacaacaacccagggtctggaaatctagcttaca
tttgcctagcatccacaaggccatgggttcagtacccagcaccatataaa
actgggtgtggtggtgcacacctgtgatcccagcactcaggacatagaga
cagaagggtcagaagttccaggttatcctcagttacatgggcaatttaag
gcctgccctacattcctgtgatcttgtctcaaaaacaaaaatgaacacac
acctgccctgctcctgttgtatgaaagactcggcacacacgtcacctctt
tcttgcactgtgtacggaacgcaaggcttctcacaggagagacaggcacc
ccatcagccacccacactcctagcccatacacatttctattccaccccag
cacttgtataaattccacattcactctgaggtggaggcaaggtttctttt
tacatatcaaaaacttaagaggaagaagcccttgactggggctctgtctg
tgttagtcccaagggcggatgtttcgagcaaagagttgtatggtacagca
tcccagggcctggccagtctgactgctgggggctctttgacagaggctgg
ttctgtgtgctcaggcttgacaggactagggctcagagggcaacactgca
ctgaagggcagagacacagagagaggggcagaagggagatgcggagagag
tccgtaggagagactgaggacgtaatttctaggtgaacaaagggtaaaag
cctgggctagacaagaaggggagagaatagagaggttaagagagagtctg
gaaccttctctccaaggttgggactaggggtggagtgccagccaataata
tcaataaaattagaaaaatttcatttgtcaaggaggtactcgagatggac
ccagccttaagcactccaagcccaggaactaacaaaggacagctctcata
gagggctgcacctttaaatgcagaggagttctaagttagacctcagacac
actactatgggaatgggtataggcggagacggattgggtggccagaaagg
ggcaccaggcttcaaaggccatcccagaaggggctggtgggttggtggcc
aggtgctcaggctctcaggctgacaagatgacctcacagag
gaattcactctatagaccaggcagccctcgaactcacagtgattcacctg
cctctgccttccaagagctgggattaaaggcatgtgctactaccacccag
cctctgactctattcttaaggcagacgtaaagaaaaggatcttaatatga
atttgtaggacatcagcaactgctgaagttctcccaaaggagtagaggat
acatcaatacttttagctggaagttacaggatgagatgggtctagttacc
atagcattgtcttgaaaaggtccaggccagcttctctcactttacaagac
agtatctgcacacacagagaatgtcttatcgctaatcctccaggttatgt
acctggtcagagaaaagaggtctggtcctctggaagtctttcctagctga
gtcatcaccttgccctggggtcaggaacatttaatttggtactaccccat
ttactgagttcttcagatgccattcagcaagaatgaaagaagctgcagac
agtgtgacaagccacacagagctcccagctttcagtagcttaaggccttt
gaagcaggcaatttgaaatatagtacctatcattttactggcaaaggaac
cttcctttttgaatctttggatttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttctcctcc
tcctcctcctcctcctcccccaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95039518_95040706
seq2: B6Ng01-297F16.b_47_1237

seq1  GAATTCAGTTATGAAAGAATAAGTTGTGTTATTTTTAAATAAAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTATGAAAGAATAAGTTGTGTTATTTTTAAATAAAAAAATAA  50

seq1  TAACAACAACAATAATAACAACAACCCAGGGTCTGGAAATCTAGCTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAACAATAATAACAACAACCCAGGGTCTGGAAATCTAGCTTACA  100

seq1  TTTGCCTAGCATCCACAAGGCCATGGGTTCAGTACCCAGCACCATATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTAGCATCCACAAGGCCATGGGTTCAGTACCCAGCACCATATAAA  150

seq1  ACTGGGTGTGGTGGTGCACACCTGTGATCCCAGCACTCAGGACATAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGTGGTGGTGCACACCTGTGATCCCAGCACTCAGGACATAGAGA  200

seq1  CAGAAGGGTCAGAAGTTCCAGGTTATCCTCAGTTACATGGGCAATTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGGTCAGAAGTTCCAGGTTATCCTCAGTTACATGGGCAATTTAAG  250

seq1  GCCTGCCCTACATTCCTGTGATCTTGTCTCAAAAACAAAAATGAACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCTACATTCCTGTGATCTTGTCTCAAAAACAAAAATGAACACAC  300

seq1  ACCTGCCCTGCTCCTGTTGTATGAAAGACTCGGCACACACGTCACCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCTGCTCCTGTTGTATGAAAGACTCGGCACACACGTCACCTCTT  350

seq1  TCTTGCACTGTGTACGGAACGCAAGGCTTCTCACAGGAGAGACAGGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCACTGTGTACGGAACGCAAGGCTTCTCACAGGAGAGACAGGCACC  400

seq1  CCATCAGCCACCCACACTCCTAGCCCATACACATTTCTATTCCACCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCCACCCACACTCCTAGCCCATACACATTTCTATTCCACCCCAG  450

seq1  CACTTGTATAAATTCCACATTCACTCTGAGGTGGAGGCAAGGTTTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTATAAATTCCACATTCACTCTGAGGTGGAGGCAAGGTTTCTTTT  500

seq1  TACATATCAAAAACTTAAGAGGAAGAAGCCCTTGACTGGGGCTCTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCAAAAACTTAAGAGGAAGAAGCCCTTGACTGGGGCTCTGTCTG  550

seq1  TGTTAGTCCCAAGGGCGGATGTTTCGAGCAAAGAGTTGTATGGTACAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTCCCAAGGGCGGATGTTTCGAGCAAAGAGTTGTATGGTACAGCA  600

seq1  TCCCAGGGCCTGGCCAGTCTGACTGCTGGGGGCTCTTTGACAGAGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGCCTGGCCAGTCTGACTGCTGGGGGCTCTTTGACAGAGGCTGG  650

seq1  TTCTGTGTGCTCAGGCTTGACAGGACTAGGGCTCAGAGGGCAACACTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTGCTCAGGCTTGACAGGACTAGGGCTCAGAGGGCAACACTGCA  700

seq1  CTGAAGGGCAGAGACACAGAGAGAGGGGCAGAAGGGAGATGCGGAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGCAGAGACACAGAGAGAGGGGCAGAAGGGAGATGCGGAGAGAG  750

seq1  TCCGTAGGAGAGACTGAGGACGTAATTTCTAGGTGAACAAA-GGTAAAAG  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCGTAGGAGAGACTGAGGACGTAATTTCTAGGTGAACAAAGGGTAAAAG  800

seq1  CCTGGGCTAGACAAGAAGGGGAGAGAATAGAGAGGTTAAGAGAGAGTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTAGACAAGAAGGGGAGAGAATAGAGAGGTTAAGAGAGAGTCTG  850

seq1  GAACCTTCTCTCCAAGGTTGGGACTA-GGGTGGAGTGCCAGCCAATAATA  898
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAACCTTCTCTCCAAGGTTGGGACTAGGGGTGGAGTGCCAGCCAATAATA  900

seq1  TCAATAAAATTAGAAAAA-TTCA-TTGTCAAGGAGGTACTCGAGATGGAC  946
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TCAATAAAATTAGAAAAATTTCATTTGTCAAGGAGGTACTCGAGATGGAC  950

seq1  CCAGCCTTAAGCACTCCAAG-CCAGGAACTAACAAAAGACAAGCTCTCAT  995
      |||||||||||||||||||| ||||||||||||||| ||| |||||||||
seq2  CCAGCCTTAAGCACTCCAAGCCCAGGAACTAACAAAGGAC-AGCTCTCAT  999

seq1  AGAGGGCTGCACCTTTAAATGCAGA-GAGTTCTAAGTTAGACCTCAGACA  1044
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  AGAGGGCTGCACCTTTAAATGCAGAGGAGTTCTAAGTTAGACCTCAGAC-  1048

seq1  ACACTACTAT-GGAATGGGTATAAGCGGAGACCGATTGG--TGCCAGAAA  1091
      |||||||||| |||||||||||| |||||||| ||||||   ||||||||
seq2  ACACTACTATGGGAATGGGTATAGGCGGAGACGGATTGGGTGGCCAGAAA  1098

seq1  GGGGCACCCAGCCTCAAAAGCCATCCCCAGAAAGGGCCTGTTGGTTTGTG  1141
      ||||||||  || ||||| ||||| ||||||| ||||  || |||| |||
seq2  GGGGCACCAGGCTTCAAAGGCCAT-CCCAGAAGGGGCTGGTGGGTTGGTG  1147

seq1  GCCCAGTGCCTCAAGGCTCTTCAGGCTGGACAAGATGACCTCACAGAG  1189
      |||  ||| ||| |||||| ||||||| ||||||||||||||||||||
seq2  GCCAGGTG-CTC-AGGCTC-TCAGGCT-GACAAGATGACCTCACAGAG  1191

seq1: chr11_95175548_95176272
seq2: B6Ng01-297F16.g_68_792 (reverse)

seq1  GGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGAAGAAGAAGAAG  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGAAGAAGAAGAAG  50

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  100

seq1  GAAATCCAAAGATTCAAAAAGGAAGGTTCCTTTGCCAGTAAAATGATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAAAGATTCAAAAAGGAAGGTTCCTTTGCCAGTAAAATGATAGG  150

seq1  TACTATATTTCAAATTGCCTGCTTCAAAGGCCTTAAGCTACTGAAAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATTTCAAATTGCCTGCTTCAAAGGCCTTAAGCTACTGAAAGCTG  200

seq1  GGAGCTCTGTGTGGCTTGTCACACTGTCTGCAGCTTCTTTCATTCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTGTGTGGCTTGTCACACTGTCTGCAGCTTCTTTCATTCTTGCT  250

seq1  GAATGGCATCTGAAGAACTCAGTAAATGGGGTAGTACCAAATTAAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCATCTGAAGAACTCAGTAAATGGGGTAGTACCAAATTAAATGTT  300

seq1  CCTGACCCCAGGGCAAGGTGATGACTCAGCTAGGAAAGACTTCCAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCCCAGGGCAAGGTGATGACTCAGCTAGGAAAGACTTCCAGAGGA  350

seq1  CCAGACCTCTTTTCTCTGACCAGGTACATAACCTGGAGGATTAGCGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTCTTTTCTCTGACCAGGTACATAACCTGGAGGATTAGCGATAA  400

seq1  GACATTCTCTGTGTGTGCAGATACTGTCTTGTAAAGTGAGAGAAGCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTCTGTGTGTGCAGATACTGTCTTGTAAAGTGAGAGAAGCTGGC  450

seq1  CTGGACCTTTTCAAGACAATGCTATGGTAACTAGACCCATCTCATCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTTTTCAAGACAATGCTATGGTAACTAGACCCATCTCATCCTGT  500

seq1  AACTTCCAGCTAAAAGTATTGATGTATCCTCTACTCCTTTGGGAGAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCAGCTAAAAGTATTGATGTATCCTCTACTCCTTTGGGAGAACTT  550

seq1  CAGCAGTTGCTGATGTCCTACAAATTCATATTAAGATCCTTTTCTTTACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTGCTGATGTCCTACAAATTCATATTAAGATCCTTTTCTTTACG  600

seq1  TCTGCCTTAAGAATAGAGTCAGAGGCTGGGTGGTAGTAGCACATGCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTAAGAATAGAGTCAGAGGCTGGGTGGTAGTAGCACATGCCTTT  650

seq1  AATCCCAGCTCTTGGAAGGCAGAGGCAGGTGAATCACTGTGAGTTCGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCTCTTGGAAGGCAGAGGCAGGTGAATCACTGTGAGTTCGAGG  700

seq1  GCTGCCTGGTCTATAGAGTGAATTC  725
      |||||||||||||||||||||||||
seq2  GCTGCCTGGTCTATAGAGTGAATTC  725