BAC Information

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BAC

Clone NameB6Ng01-298C13
Chromosome11 (Build37)
Map Location 105,381,848 - 105,382,942
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190
Downstream geneEG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298C13.bB6Ng01-298C13.g
ACCGA093339GA093340
length1,1981,082
definitionB6Ng01-298C13.b B6Ng01-298C13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccgt
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattaccgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttccttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctacctcagtgaaa
ttcttaggagtccagtggtgtggggcatgcagagatattccttctaaggt
gaaagataagttattgcacctggcccctcctacaaccaagaaagaagcac
aacgtttagtgggtctatttggattctggagacaacacatccctcacttg
ggtgtgttacttaggcctatttaccaagtgactcggaagctgctagcttt
gtgtggggcctggaacagagaagcccttcacagtccaggctgctttgcag
ctgctctaccacttggaccatatgaccagcagacccgatgtactgagtgt
tttgtggctgatagagatgctgtttgagcctctgcagacccctgttagtt
gaatccacagaaaagcttgggattttgagcaagctctaaccatcatctgc
gacactattctcccttgaaacagccttgacttgctttggccgtatgaact
gacgctgacaatggaaccaaggtctcatattggcaacttgaattaaac
gaattctttagggaatatttgaagaaagaaattcaactgagcctaccttc
ggtaaaggccaagtagctcacgtagaccaaccattctgtagacaaagcta
gatctttgagacaatacaattcttgaaaaatatttaaagcaactatgtaa
acttacctaataattattttaagacaaaacaaaacaacaacaataataaa
aaccaagccagacatggtggcacatgcatttagtcccagcattccagaga
gaggggtaggcaaaccacccagaggctagcctggtctataaggagttcca
ggctggccagggctatatagtgagaccctgtgtcaaagaaggaggacagg
cagggtggcaatgagaggacaccaggactggtgaattcagtatctgatga
ggacctgtgtctctagaaaccccctttttcactttaacctcggatgttat
taatggttttccttgagtcttcgttttcatttgtttgattgatttttgtt
tttttgaggcaaggtttctctgtgtagctttggctgtcctggaactcatc
cttgagccttctttaaggggcttattcccattgctgtggattgaatgtag
tttgagtctcatgcgtcccaaaagtctcatgcaacagaatcttggtcctt
ggtgtgacagctctgggaggtagtgtaacctgtaaaagccgggacctggt
atgagaaaatgggctcactgggtagagagcccttgggaggaactaaagaa
ctaaggaacaaaggaattttcatgaaagtgaattgtttttaatttttaaa
atttattattagtgcgtgtttatgtatgtatgtgatcatgtctatatgcg
gttccacagtgcatggatgaaggtcagaggaccactctgtgctgttggtt
ctcttctttcactttacctgctaagccaactcactggccctgaaagtgag
tattatagaaactaaagacagatcttggctcagcttctgctcatctcttc
cctttacactcacactgacacatctgcatatttgtatgcagcagaacagt
cctactagagcagcacagtcttatatggactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105381848_105382942
seq2: B6Ng01-298C13.g_68_1149 (reverse)

seq1  AAGTCCATAT-AGACTTGTGCTGGCTCTAAGTAGGGCCTGTCTGGCTGCA  49
      |||||||||| |||| |||||| ||||| |||| || ||||   ||||||
seq2  AAGTCCATATAAGAC-TGTGCT-GCTCT-AGTA-GGACTGTTCTGCTGCA  46

seq1  TTACAATATGGCAGATGGTGTCAGTGTGGAGTGTAAAGGGAAGAGATGAG  99
      |   ||||| |||||| |||||||||| ||||||||||||||||||||| 
seq2  TACAAATAT-GCAGAT-GTGTCAGTGT-GAGTGTAAAGGGAAGAGATGA-  92

seq1  GCAGGAAGCTGGAGGCCAAGATCTGTCTTTAGTTTTCTATAATTACTCAC  149
      ||| |||||||   |||||||||||||||||| ||||||||| |||||||
seq2  GCA-GAAGCTG--AGCCAAGATCTGTCTTTAG-TTTCTATAA-TACTCAC  137

seq1  TTTCAGGGCCAGTGAGTTGGCTTAGCAGGTAAAGGTGAAAGAAGAGAACC  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCAGGGCCAGTGAGTTGGCTTAGCAGGTAAA-GTGAAAGAAGAGAACC  186

seq1  AACAGCACAGAGTGGTCCTCTGACCTTCATCCATGCACTGTGGAACCGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACAGAGTGGTCCTCTGACCTTCATCCATGCACTGTGGAACCGCA  236

seq1  TATAGACATGATCACATACATACATAAACACGCACTAATAATAAATTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACATGATCACATACATACATAAACACGCACTAATAATAAATTTTA  286

seq1  AAAATTAAAAACAATTCACTTTCATGAAAATTCCTTTGTTCCTTAGTTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAATTAAAAACAATTCACTTTCATGAAAATTCCTTTGTTCCTTAGTTCT  336

seq1  TTAGTTCCTCCCAAGGGCTCTCTACCCAGTGAGCCCATTTTCTCATACCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCTCCCAAGGGCTCTCTACCCAGTGAGCCCATTTTCTCATACCA  386

seq1  GGTCCCGGCTTTTACAGGTTACACTACCTCCCAGAGCTGTCACACCAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCGGCTTTTACAGGTTACACTACCTCCCAGAGCTGTCACACCAAGG  436

seq1  ACCAAGATTCTGTTGCATGAGACTTTTGGGACGCATGAGACTCAAACTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATTCTGTTGCATGAGACTTTTGGGACGCATGAGACTCAAACTAC  486

seq1  ATTCAATCCACAGCAATGGGAATAAGCCCCTTAAAGAAGGCTCAAGGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATCCACAGCAATGGGAATAAGCCCCTTAAAGAAGGCTCAAGGATG  536

seq1  AGTTCCAGGACAGCCAAAGCTACACAGAGAAACCTTGCCTCAAAAAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAAAGCTACACAGAGAAACCTTGCCTCAAAAAAACA  586

seq1  AAAATCAATCAAACAAATGAAAACGAAGACTCAAGGAAAACCATTAATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAATCAAACAAATGAAAACGAAGACTCAAGGAAAACCATTAATAA  636

seq1  CATCCGAGGTTAAAGTGAAAAAGGGGGTTTCTAGAGACACAGGTCCTCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGAGGTTAAAGTGAAAAAGGGGGTTTCTAGAGACACAGGTCCTCAT  686

seq1  CAGATACTGAATTCACCAGTCCTGGTGTCCTCTCATTGCCACCCTGCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTGAATTCACCAGTCCTGGTGTCCTCTCATTGCCACCCTGCCTG  736

seq1  TCCTCCTTCTTTGACACAGGGTCTCACTATATAGCCCTGGCCAGCCTGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCTTTGACACAGGGTCTCACTATATAGCCCTGGCCAGCCTGGA  786

seq1  ACTCCTTATAGACCAGGCTAGCCTCTGGGTGGTTTGCCTACCCCTCTCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTATAGACCAGGCTAGCCTCTGGGTGGTTTGCCTACCCCTCTCTC  836

seq1  TGGAATGCTGGGACTAAATGCATGTGCCACCATGTCTGGCTTGGTTTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCTGGGACTAAATGCATGTGCCACCATGTCTGGCTTGGTTTTTA  886

seq1  TTATTGTTGTTGTTTTGTTTTGTCTTAAAATAATTATTAGGTAAGTTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGTTGTTTTGTTTTGTCTTAAAATAATTATTAGGTAAGTTTAC  936

seq1  ATAGTTGCTTTAAATATTTTTCAAGAATTGTATTGTCTCAAAGATCTAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGCTTTAAATATTTTTCAAGAATTGTATTGTCTCAAAGATCTAGC  986

seq1  TTTGTCTACAGAATGGTTGGTCTACGTGAGCTACTTGGCCTTTACCGAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTACAGAATGGTTGGTCTACGTGAGCTACTTGGCCTTTACCGAAG  1036

seq1  GTAGGCTCAGTTGAATTTCTTTCTTCAAATATTCCCTAAAGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTCAGTTGAATTTCTTTCTTCAAATATTCCCTAAAGAATTC  1082