BAC Information

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BAC

Clone NameB6Ng01-299A04
Chromosome11 (Build37)8 (Build37)
Map Location 35,374,659 - 35,375,6028,836,819 - 8,837,919
singlet/doubletsingletsinglet
Overlap geneSlit3
Upstream geneDock2, Dock2, Ccdc99, LOC100038976, LOC100039006
Downstream genePank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299A04.bB6Ng01-299A04.g
ACCGA093970GA093971
length1,1021,107
definitionB6Ng01-299A04.b B6Ng01-299A04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,374,659 - 35,375,602)(8,836,819 - 8,837,919)
sequence
gaattcagagatctgcctgcctctgcctcccaaatgctgggattaaaggc
gtacaccatcaccatcgtacccacattctttctttttatgtgtgtgtgtg
gtgctggggatgtaacccaaggtctttttttttttttttttttttttctg
agaaaaaaggtctgaccaaaagccatagtaacagcagtgacaatcactgg
atttcagttctgagccccaccccctccaccacccccgtactaagtgctct
atttaccttatttcaagggattagtggttggctacatagcggcctcccca
tcccaacatcctcatctcagaactctgtgggggtcacactcaatggtcaa
agggtgaaaatgagaccaaagtaaagatcttatgggcaaagagatgaccc
aaggaagggcgtgtggaatgtagacttcccttcaagttacaatatcgaga
aaacaaacttccaccccaaagactccccagaaagtgcactctcctggacc
ctctttagaattagggtctccagactgtaggagaatatatccaagcctcc
agcgtcatggtcatctgttacagcagcagcaggaagccttacacacatat
ccctgcgatcacacttgcttggatttaagtcaatagaggaactggtgtga
cttctaggcatattctcaacttcccatgagtgcaaggcccacactttacc
tttccacccttcagtgagagggaccgaagggtaagatccagagccacagc
ctagagcctacctctgtataagaggctcatgctctgtgagatcattatta
ctcctggttgcaaaggagaaaagtaatgagatccctgaaagttatccaca
gtgggcgtagctataaacggcagagccagactctaacgagggctctgcct
tgaagcccatgttcaccggctctgcccctcatgccagctctcccatttga
atgccagctgcttaaggcaggacctaagagccagacagagcgtgtgctcc
ttccctgggccaaagctgccaagaccagtaatcaaaaagtatctgtgttt
cttagcaaccgggcaaacgtggcttccagtgcatcaggtgtgttcttaag
ag

gaattcatagtcctctctccctctgtgtgtccaagaaccacttagattcg
ctaacatttcagaaagatctcttgctacccaagtcttggttcgttttaag
aaacacaaacactggatcctattttaaggtttcgccgtttgccagggagc
ctgcgtctagtttatatcgctacactttagaatcttggaattgctgagcg
tgtcatttaacctgactgggtctcagctgcttcatttaatcgacccaaca
aacactcactgcttgctctctgtcagccaagcaccttgccaactcacgca
ggaacctacgaaggttgccctcggggtctgagctgtctatagcatggccg
tggagtacttgaacggtggctagcagctcctgggacttcggtgtaaggtt
taattgaattttcattaatttaaaatttaaaactgaagtgtcgggtctgg
agagatggctcaggattaagggtccctcactgttttctaggggatgcaga
tttgattcctagcactcacagcagactcacaactgtctgtaacttcaacc
ccagtgggcagatactcttttctggcctctgtaggcactgcatacatgtg
ctgcatacatacaaaggcaaaccaatacaaaacataaaataaaggttaac
aaaattaaccgaaacctcatttggttactggaaatcttttggtctagaac
aacgcgaacaaaggatcttttaattttgtgaaatataaaaatagattagt
tgtttccaaaaagaaagaaaaaagcattaaacaaattggcatgcgctgtt
gagttatgcttttgggagacccagtagacatgcctattaaggaccttcta
cttgggtcatactggctgggtatatagtcattccttggtagttttcaagg
aactgttcccagaagcagccccacccctcaaatgacactcaaaagtactc
aagccccttctattaaaccatgaacataacccatcctatagcaactctag
agcgtttgcggttccttggacccgtgaatgacctataccacctcaacttt
tgttatttatgggagtaaatgcatgaaaagaaattcgtacggtaggtcag
gtaccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_35374659_35375602
seq2: B6Ng01-299A04.b_196_1142

seq1  AAAGGTCTGACCAAAAGCCATAGTAACAGCAGTGACAATCACTGGATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCTGACCAAAAGCCATAGTAACAGCAGTGACAATCACTGGATTTC  50

seq1  AGTTCTGAGCCCCACCCCCTCCACCACCCCCGTACTAAGTGCTCTATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGCCCCACCCCCTCCACCACCCCCGTACTAAGTGCTCTATTTA  100

seq1  CCTTATTTCAAGGGATTAGTGGTTGGCTACATAGCGGCCTCCCCATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTCAAGGGATTAGTGGTTGGCTACATAGCGGCCTCCCCATCCCA  150

seq1  ACATCCTCATCTCAGAACTCTGTGGGGGTCACACTCAATGGTCAAAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCATCTCAGAACTCTGTGGGGGTCACACTCAATGGTCAAAGGGT  200

seq1  GAAAATGAGACCAAAGTAAAGATCTTATGGGCAAAGAGATGACCCAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAGACCAAAGTAAAGATCTTATGGGCAAAGAGATGACCCAAGGA  250

seq1  AGGGCGTGTGGAATGTAGACTTCCCTTCAAGTTACAATATCGAGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGTGTGGAATGTAGACTTCCCTTCAAGTTACAATATCGAGAAAACA  300

seq1  AACTTCCACCCCAAAGACTCCCCAGAAAGTGCACTCTCCTGGACCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCACCCCAAAGACTCCCCAGAAAGTGCACTCTCCTGGACCCTCTT  350

seq1  TAGAATTAGGGTCTCCAGACTGTAGGAGAATATATCCAAGCCTCCAGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTAGGGTCTCCAGACTGTAGGAGAATATATCCAAGCCTCCAGCGT  400

seq1  CATGGTCATCTGTTACAGCAGCAGCAGGAAGCCTTACACACATATCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCATCTGTTACAGCAGCAGCAGGAAGCCTTACACACATATCCCTG  450

seq1  CGATCACACTTGCTTGGATTTAAGTCAATAGAGGAACTGGTGTGACTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCACACTTGCTTGGATTTAAGTCAATAGAGGAACTGGTGTGACTTCT  500

seq1  AGGCATATTCTCAACTTCCCATGAGTGCAAGGCCCACACTTTACCTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATTCTCAACTTCCCATGAGTGCAAGGCCCACACTTTACCTTTCC  550

seq1  ACCCTTCAGTGAGAGGGACCGAAGGGTAAGATCCAGAGCCACAGCCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCAGTGAGAGGGACCGAAGGGTAAGATCCAGAGCCACAGCCTAGA  600

seq1  GCCTACCTCTGTATAAGAGGCTCATGCTCTGTGAGATCATTATTACTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCTCTGTATAAGAGGCTCATGCTCTGTGAGATCATTATTACTCCT  650

seq1  GGTTGCAAAGGAGAAAAGTAATGAGAT-CCTGAAAGTTATCCACAGT-GG  698
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GGTTGCAAAGGAGAAAAGTAATGAGATCCCTGAAAGTTATCCACAGTGGG  700

seq1  CGTAGGCTATAAACGGCAGAGCCAGACTCTAACGAGGGCTCTGCCTTTGA  748
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGTA-GCTATAAACGGCAGAGCCAGACTCTAACGAGGGCTCTGCC-TTGA  748

seq1  GGCCCATGTTCACCGGCTCTGCCCCTCATGCCAGCTCTCCCA-TTGAATG  797
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCCCATGTTCACCGGCTCTGCCCCTCATGCCAGCTCTCCCATTTGAATG  798

seq1  CCAGCTGCTT-AGGCAGGACCTAAGAGCCAGACAGAGCGTGGTGCTCCCT  846
      |||||||||| ||||||||||||||||||||||||||||| ||||||| |
seq2  CCAGCTGCTTAAGGCAGGACCTAAGAGCCAGACAGAGCGT-GTGCTCCTT  847

seq1  CCCTGGGCCAAAGCTGCCAAGACCAGAAATC-AAAAGAATCTGGTGTTTC  895
      |||||||||||||||||||||||||| |||| ||||| |||| |||||||
seq2  CCCTGGGCCAAAGCTGCCAAGACCAGTAATCAAAAAGTATCT-GTGTTTC  896

seq1  TTAGCAAACCGGCAACCGTGGCTTCCAGTGCAATCA-GTGTGT--CTAAG  942
      ||||||| | ||||| ||||||||||||||| |||| ||||||   ||||
seq2  TTAGCAACCGGGCAAACGTGGCTTCCAGTGC-ATCAGGTGTGTTCTTAAG  945

seq1  AG  944
      ||
seq2  AG  947


seq1: chr8_8836819_8837919
seq2: B6Ng01-299A04.g_63_1169 (reverse)

seq1  TCGGTA-CTGA-CTA-CGTACGA--TTCTTTTCATGCAATTACT-CCATA  44
      |||||| |||| ||| |||||||  ||||||||||||| ||||| |||||
seq2  TCGGTACCTGACCTACCGTACGAATTTCTTTTCATGCATTTACTCCCATA  50

seq1  AATAAC-AAAGTTGAGTGGTTATAGGTCATTCACGGTGTCCAGGGAACCG  93
      |||||| |||||||||  | |||||||||||||||| ||||| |||||||
seq2  AATAACAAAAGTTGAGGTGGTATAGGTCATTCACGG-GTCCAAGGAACCG  99

seq1  CAAACGCTCTAGAGTTGCTATAGGATGGGTTATGTTCATGGTTTAATAGA  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGCTCTAGAGTTGCTATAGGATGGGTTATGTTCATGGTTTAATAGA  149

seq1  AGGGGCTTGAGTACTTTTGAGTGTCATTTGAGGGGTGGGGCTGCTTCTGG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTTGAGTACTTTTGAGTGTCATTTGAGGGGTGGGGCTGCTTCTGG  199

seq1  GAACAGTTCCTTGAAAACTACCAAGGAATGACTATATACCCAGCCAGTAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTCCTTGAAAACTACCAAGGAATGACTATATACCCAGCCAGTAT  249

seq1  GACCCAAGTAGAAGGTCCTTAATAGGCATGTCTACTGGGTCTCCCAAAAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAGTAGAAGGTCCTTAATAGGCATGTCTACTGGGTCTCCCAAAAG  299

seq1  CATAACTCAACAGCGCATGCCAATTTGTTTAATGCTTTTTTCTTTCTTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTCAACAGCGCATGCCAATTTGTTTAATGCTTTTTTCTTTCTTTT  349

seq1  TGGAAACAACTAATCTATTTTTATATTTCACAAAATTAAAAGATCCTTTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAACTAATCTATTTTTATATTTCACAAAATTAAAAGATCCTTTG  399

seq1  TTCGCGTTGTTCTAGACCAAAAGATTTCCAGTAACCAAATGAGGTTTCGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCGTTGTTCTAGACCAAAAGATTTCCAGTAACCAAATGAGGTTTCGG  449

seq1  TTAATTTTGTTAACCTTTATTTTATGTTTTGTATTGGTTTGCCTTTGTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGTTAACCTTTATTTTATGTTTTGTATTGGTTTGCCTTTGTAT  499

seq1  GTATGCAGCACATGTATGCAGTGCCTACAGAGGCCAGAAAAGAGTATCTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAGCACATGTATGCAGTGCCTACAGAGGCCAGAAAAGAGTATCTG  549

seq1  CCCACTGGGGTTGAAGTTACAGACAGTTGTGAGTCTGCTGTGAGTGCTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGGGGTTGAAGTTACAGACAGTTGTGAGTCTGCTGTGAGTGCTAG  599

seq1  GAATCAAATCTGCATCCCCTAGAAAACAGTGAGGGACCCTTAATCCTGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAATCTGCATCCCCTAGAAAACAGTGAGGGACCCTTAATCCTGAG  649

seq1  CCATCTCTCCAGACCCGACACTTCAGTTTTAAATTTTAAATTAATGAAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCAGACCCGACACTTCAGTTTTAAATTTTAAATTAATGAAAA  699

seq1  TTCAATTAAACCTTACACCGAAGTCCCAGGAGCTGCTAGCCACCGTTCAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAAACCTTACACCGAAGTCCCAGGAGCTGCTAGCCACCGTTCAA  749

seq1  GTACTCCACGGCCATGCTATAGACAGCTCAGACCCCGAGGGCAACCTTCG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCACGGCCATGCTATAGACAGCTCAGACCCCGAGGGCAACCTTCG  799

seq1  TAGGTTCCTGCGTGAGTTGGCAAGGTGCTTGGCTGACAGAGAGCAAGCAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCCTGCGTGAGTTGGCAAGGTGCTTGGCTGACAGAGAGCAAGCAG  849

seq1  TGAGTGTTTGTTGGGTCGATTAAATGAAGCAGCTGAGACCCAGTCAGGTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTGTTGGGTCGATTAAATGAAGCAGCTGAGACCCAGTCAGGTT  899

seq1  AAATGACACGCTCAGCAATTCCAAGATTCTAAAGTGTAGCGATATAAACT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACACGCTCAGCAATTCCAAGATTCTAAAGTGTAGCGATATAAACT  949

seq1  AGACGCAGGCTCCCTGGCAAACGGCGAAACCTTAAAATAGGATCCAGTGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCAGGCTCCCTGGCAAACGGCGAAACCTTAAAATAGGATCCAGTGT  999

seq1  TTGTGTTTCTTAAAACGAACCAAGACTTGGGTAGCAAGAGATCTTTCTGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTCTTAAAACGAACCAAGACTTGGGTAGCAAGAGATCTTTCTGA  1049

seq1  AATGTTAGCGAATCTAAGTGGTTCTTGGACACAGAGAGGGAGAGAGGACT  1093
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATGTTAGCGAATCTAAGTGGTTCTTGGACACACAGAGGGAGAGAGGACT  1099

seq1  CTGAATTC  1101
       |||||||
seq2  ATGAATTC  1107


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