BAC Information

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BAC

Clone NameB6Ng01-299N13
Chromosome11 (Build37)
Map Location 59,624,046 - 59,768,222
singlet/doubletdoublet
Overlap geneCops3, Nt5m, Med9
Upstream geneOlfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn
Downstream geneRasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299N13.bB6Ng01-299N13.g
ACCGA094576GA094577
length1,169679
definitionB6Ng01-299N13.b B6Ng01-299N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,767,059 - 59,768,222)(59,624,046 - 59,624,724)
sequence
gaattccagaggctttaaaggcaaaagaactagttaagaagcgactataa
gccaggaggtggtggcatacacctttacttccagcactcagaaggcagag
gcaggtggatctcttgagtttgaggccagcctggtctacaaagtgagttc
caggacagacaagctacacagagaaaccctgacttgaaaaaaaggtgaca
ataagatgtaagatccaaaactgaggttacagacctggatgagtgaagaa
cagtgcaagttaaaaggaaaagctccaataaccacaagcacatgaccatg
aggaagctgggcagcaaaggtaggatgccgcagggaagtaccgacaagca
agaacaagaaggaaaactagcttcagcagggaataaacaaacagtaaaga
gctcaggacttgggaagcagaggcaggcggatttctgagttcgagggcag
cctggtctacagagtgagttccaggccagccagggctacacagagaaacc
ctgtctcgaaaaaccaaaaaacaaacaaacaaacaaacaaacaacaacaa
caaagctcaggactaaaatacctcagtattagagactagggtgtctagag
gatcagagaacatctggagagtgaatgtatgattagaaggcagcatcaaa
catgagcaacagtattttatatccttcataactggtattgggaagaggag
gcagaggagacagtccacccaccctttactctccacaaacatattgcctg
caaacatcttaaacttaaacatgagaaccggaagcataagtgttctagga
aaaggagaccactatataagaccttttcttttgcactgggtgtgccacat
cccagccctccagaggcagagccaggaggatctctatgagttcaaagcca
gcctgcgctacatatcaagtcccaggacagctagccaacactacacatgt
agaaaccctgtctcagaaaccagaaaataaaccagactttgttgtattta
ttagcatttgtggatagaacccagacctttgcacaaccaggccaagtgct
ccacactgagccatgccctataataattaagcaagaattctgtaatgctt
tggatacaaatgttctccccacagatcaatatttaaacactgggtaatac
tattaaatgggaaccttct
gaattccaggccagcctggtctaaagaatgagttccaggacagccagggc
tacacagagaaaccctgtaaaaccaaaaagaaagaaagaaaagaaaaaaa
aaggattttaagggctggagagatggttcagcggttaagagcattaactg
ctcttccagaggtcctgagttcaattccaaacaaccacatggtggctcac
aaccatctataatgggatccaatgctctcttctggtgtgcatgaagagag
tgacagtgtactcacattttaaaaataataaaaaaaaatacatctttttt
taaatgaattttaaagctattagtgcataccatgggcccttgaagacaga
tgagaacagagctctgggcttgagcctgtaactaacgctgccagctgtac
acagcggccagcgctgccagcctccgctgtgtacacgaggacgcccagaa
tgtggttatccggaagtgggaagcttcagatgagtagaagttgatgagtt
ggtatctgtttgtttttcaaatcacggggatcggattcctttctctctat
ttcagctttcgtgttttgttggaagagggagcaggaggaaaaaaaatatg
caaacttgtgttctataactttgtttactgcctggtaaagattaaggagt
gcagggtggagttatggtgttaggtattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59767059_59768222
seq2: B6Ng01-299N13.b_50_1218 (reverse)

seq1  AGAA-GTTCCCA-TTAATAGTATTACCAAGTGTTTAAAATATGATTCTGT  48
      |||| ||||||| |||||||||||||| ||||||| ||||||   |||||
seq2  AGAAGGTTCCCATTTAATAGTATTACCCAGTGTTT-AAATATTGATCTGT  49

seq1  -GGGAGACATTTTGTAT-CAAAGCATAACAG-ATTCTTGCTTATTAATTA  95
       ||||||   ||||||| |||||||| |||| ||||||||||| | ||| 
seq2  GGGGAGAACATTTGTATCCAAAGCATTACAGAATTCTTGCTTAATTATT-  98

seq1  ATAGGGCATGGCTCAGTGTTGGAGCACTTGCCTGGGTTGTGCAAGGTTCT  145
      |||||||||||||||||| ||||||||||| |  |||||||||| | |||
seq2  ATAGGGCATGGCTCAGTG-TGGAGCACTTGGCCTGGTTGTGCAAAGGTCT  147

seq1  GGGTTCTATCCAC-AATGCTA--TAATACAACAAAGTCTGGTTTA-TTTC  191
      ||||||||||||| |||||||   ||||||||||||||||||||| ||||
seq2  GGGTTCTATCCACAAATGCTAATAAATACAACAAAGTCTGGTTTATTTTC  197

seq1  TGGTTTCTGAGACAGGGTTTCTACATGTTGTAGTGTTGGCTAGCTGTCCT  241
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGTTTCTGAGACAGGGTTTCTACATG-TGTAGTGTTGGCTAGCTGTCCT  246

seq1  GGGACTTGATATGTAGCGCAGGCTGGCTTTGAACTCATAGAGATCCTCCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGATATGTAGCGCAGGCTGGCTTTGAACTCATAGAGATCCTCCT  296

seq1  GGCTCTGCCTCTGGAGGGCTGGGATGTGGCACACCCAGTGCAAAAGAAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCCTCTGGAGGGCTGGGATGTGGCACACCCAGTGCAAAAGAAAA  346

seq1  GGTCTTATATAGTGGTCTCCTTTTCCTAGAACACTTATGCTTCCGGTTCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTATATAGTGGTCTCCTTTTCCTAGAACACTTATGCTTCCGGTTCT  396

seq1  CATGTTTAAGTTTAAGATGTTTGCAGGCAATATGTTTGTGGAGAGTAAAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTAAGTTTAAGATGTTTGCAGGCAATATGTTTGTGGAGAGTAAAG  446

seq1  GGTGGGTGGACTGTCTCCTCTGCCTCCTCTTCCCAATACCAGTTATGAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGGACTGTCTCCTCTGCCTCCTCTTCCCAATACCAGTTATGAAG  496

seq1  GATATAAAATACTGTTGCTCATGTTTGATGCTGCCTTCTAATCATACATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAAATACTGTTGCTCATGTTTGATGCTGCCTTCTAATCATACATT  546

seq1  CACTCTCCAGATGTTCTCTGATCCTCTAGACACCCTAGTCTCTAATACTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCAGATGTTCTCTGATCCTCTAGACACCCTAGTCTCTAATACTG  596

seq1  AGGTATTTTAGTCCTGAGCTTTGTTGTTGTTGTTTGTTTGTTTGTTTGTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTAGTCCTGAGCTTTGTTGTTGTTGTTTGTTTGTTTGTTTGTT  646

seq1  TGTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGGCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGGCC  696

seq1  TGGAACTCACTCTGTAGACCAGGCTGCCCTCGAACTCAGAAATCCGCCTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTCTGTAGACCAGGCTGCCCTCGAACTCAGAAATCCGCCTG  746

seq1  CCTCTGCTTCCCAAGTCCTGAGCTCTTTACTGTTTGTTTATTCCCTGCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCCCAAGTCCTGAGCTCTTTACTGTTTGTTTATTCCCTGCTG  796

seq1  AAGCTAGTTTTCCTTCTTGTTCTTGCTTGTCGGTACTTCCCTGCGGCATC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGTTTTCCTTCTTGTTCTTGCTTGTCGGTACTTCCCTGCGGCATC  846

seq1  CTACCTTTGCTGCCCAGCTTCCTCATGGTCATGTGCTTGTGGTTATTGGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTGCTGCCCAGCTTCCTCATGGTCATGTGCTTGTGGTTATTGGA  896

seq1  GCTTTTCCTTTTAACTTGCACTGTTCTTCACTCATCCAGGTCTGTAACCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCTTTTAACTTGCACTGTTCTTCACTCATCCAGGTCTGTAACCT  946

seq1  CAGTTTTGGATCTTACATCTTATTGTCACCTTTTTTTCAAGTCAGGGTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGGATCTTACATCTTATTGTCACCTTTTTTTCAAGTCAGGGTTT  996

seq1  CTCTGTGTAGCTTGTCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGCTTGTCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC  1046

seq1  TCAAACTCAAGAGATCCACCTGCCTCTGCCTTCTGAGTGCTGGAAGTAAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCAAGAGATCCACCTGCCTCTGCCTTCTGAGTGCTGGAAGTAAA  1096

seq1  GGTGTATGCCACCACCTCCTGGCTTATAGTCGCTTCTTAACTAGTTCTTT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATGCCACCACCTCCTGGCTTATAGTCGCTTCTTAACTAGTTCTTT  1146

seq1  TGCCTTTAAAGCCTCTGGAATTC  1164
      |||||||||||||||||||||||
seq2  TGCCTTTAAAGCCTCTGGAATTC  1169

seq1: chr11_59624046_59624724
seq2: B6Ng01-299N13.g_68_746

seq1  GAATTCCAGGCCAGCCTGGTCTAAAGAATGAGTTCCAGGACAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTGGTCTAAAGAATGAGTTCCAGGACAGCCAGGGC  50

seq1  TACACAGAGAAACCCTGTAAAACCAAAAAGAAAGAAAGAAAAGAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTAAAACCAAAAAGAAAGAAAGAAAAGAAAAAAA  100

seq1  AAGGATTTTAAGGGCTGGAGAGATGGTTCAGCGGTTAAGAGCATTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTTAAGGGCTGGAGAGATGGTTCAGCGGTTAAGAGCATTAACTG  150

seq1  CTCTTCCAGAGGTCCTGAGTTCAATTCCAAACAACCACATGGTGGCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAGGTCCTGAGTTCAATTCCAAACAACCACATGGTGGCTCAC  200

seq1  AACCATCTATAATGGGATCCAATGCTCTCTTCTGGTGTGCATGAAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTATAATGGGATCCAATGCTCTCTTCTGGTGTGCATGAAGAGAG  250

seq1  TGACAGTGTACTCACATTTTAAAAATAATAAAAAAAAATACATCTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGTACTCACATTTTAAAAATAATAAAAAAAAATACATCTTTTTT  300

seq1  TAAATGAATTTTAAAGCTATTAGTGCATACCATGGGCCCTTGAAGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAATTTTAAAGCTATTAGTGCATACCATGGGCCCTTGAAGACAGA  350

seq1  TGAGAACAGAGCTCTGGGCTTGAGCCTGTAACTAACGCTGCCAGCTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAGAGCTCTGGGCTTGAGCCTGTAACTAACGCTGCCAGCTGTAC  400

seq1  ACAGCGGCCAGCGCTGCCAGCCTCCGCTGTGTACACGAGGACGCCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGCCAGCGCTGCCAGCCTCCGCTGTGTACACGAGGACGCCCAGAA  450

seq1  TGTGGTTATCCGGAAGTGGGAAGCTTCAGATGAGTAGAAGTTGATGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTATCCGGAAGTGGGAAGCTTCAGATGAGTAGAAGTTGATGAGTT  500

seq1  GGTATCTGTTTGTTTTTCAAATCACGGGGATCGGATTCCTTTCTCTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTGTTTGTTTTTCAAATCACGGGGATCGGATTCCTTTCTCTCTAT  550

seq1  TTCAGCTTTCGTGTTTTGTTGGAAGAGGGAGCAGGAGGAAAAAAAATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTTCGTGTTTTGTTGGAAGAGGGAGCAGGAGGAAAAAAAATATG  600

seq1  CAAACTTGTGTTCTATAACTTTGTTTACTGCCTGGTAAAGATTAAGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGTGTTCTATAACTTTGTTTACTGCCTGGTAAAGATTAAGGAGT  650

seq1  GCAGGGTGGAGTTATGGTGTTAGGTATTG  679
      |||||||||||||||||||||||||||||
seq2  GCAGGGTGGAGTTATGGTGTTAGGTATTG  679