BAC Information

Click to search

BAC

Clone NameB6Ng01-300A19
Chromosome11 (Build37)4 (Build37)
Map Location 58,157,990 - 58,158,211112,763,960 - 112,765,089
singlet/doubletsingletsinglet
Overlap geneSh3bp5l
Upstream geneLOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik
Downstream gene2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300A19.bB6Ng01-300A19.g
ACCGA094724GA094725
length9071,129
definitionB6Ng01-300A19.b B6Ng01-300A19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,157,990 - 58,158,211)(112,763,960 - 112,765,089)
sequence
gaattcccaaaacaggacctttctcagaagctgtgttgctttggcagttc
caagaagctgtcagcttctgtggtgcagactctcacctgtgcagactaaa
ttcctaagttccttgtagtcccggaaccaagatggcgaccgctgctcctg
aggctgaggctgcctcccgagccaggcggacacctgtcctctggtccgga
cggtggccggctgtctgctgcccccaaagggtgctgcctcagtggtctgt
gcttctgcctgtcccagaagctgtccagttctctggcacaccctctcacc
tgttcagactaatttcctaagttcggcgggacccggaacaagatggcgac
cactgctgctgaggctgagtctgcctcccaagctgggcggacacctgtcc
tccggtcaggagggtggccggctgtctacggcccgcaaagggtgcttcct
cagtggctctgtgcttctgcctgtcctagaagctgtccggttctctggcg
caccctctcacctgttcagactaatttcctaagttaggcgggtcccggaa
caatggagtccatgttataaaatatgattttcctgaaaagtttatgatat
tgatccacacatctatcatacctgcttataagaggcagcttgtcaaacca
ggatttaaacccaaaattcccatggagcccatgttagaccaaatatgagt
cagtgactaatatttcctttctagttctgaactgcaggtgaaattttcca
taattaagtatcaaaaatttatatttctgtctttaaattaatgagttacc
tggtccagagcacttagtactttgtttcctgattctttattcacagggaa
ggatgtacaaagacacacattctctgtgtaactgattggggtaggggaga
agagggg
gaattcaactaacctgagataaaaattcactaccctcaaacacctgaatg
ggcttgggcaggagtataggctgcagcagggtagatttgaaggtggctgg
gtttgaggggcctacagagaatgaaaaagggacatctacactggagagag
actttctgtgttctcttccacgtatgtttcactcctcacactgccccctt
caccccaaacaatgacataaacaatgtgggtctctttacattcagttact
ccctatgaataaagaatcaggaaacaaaggtacaaagttctctggaccag
gttattgatataaagagagaaatataaacttttgctacttaaagatggga
aatttcacaggtagttcaaaactagaatgggaatattagtcactaactcc
aaatagagagagcagtgataatcgcctgtaatgtactagtattaatagaa
atctgtggctccagggagagagcataacagatagatattataatatttat
taattaaataaatttctgtagttcaatgtagacagcacaaaaatagatgg
tataacaggatggctgctctaggaagagtgtttaacaattaaaatttagt
ttcttcctattgagaaatattagtgaaaatttgaaataattgctttaaaa
atggtatagaaatatattgctctaataagtcttataggatactcatattt
tgtctgacatgggctccatgggaattttaggtttaaatcctgttttgaca
agctatctctcataagcaagtataaatagatgtgtgaatcaatttaataa
agtcggcaggagactaatattctctaatatgaactccacagaaaatttgg
gttaatatactgacatgacaaattagaaagtcttaaagaggctaaacatt
gtgtgattttgagtactgtgggttgtttataggtcctttggcagatcaga
agctacaggtttttgtggtttttggtgaagtgtatgctgcttcttggaaa
agttttgtctttgtgtatttgggaaaaggtgactaagtatataaaacttc
agagttaatatggtagtatttgaaagaagggagaactccttgaagtaact
agattctagagaatggaacaaaaagttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58157990_58158211
seq2: B6Ng01-300A19.b_663_894

seq1  ATACCTGCTTATAAGAAGCAGCTTGTCAAACCAGGATTTAAACCCAAAAT  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATACCTGCTTATAAGAGGCAGCTTGTCAAACCAGGATTTAAACCCAAAAT  50

seq1  TCCCGTGGAACCCACGTTAGACAGAATATGAGTATCCTGTAAGACT--TA  98
      |||| |||| |||| |||||||  |||||||||   | ||  ||||  ||
seq2  TCCCATGGAGCCCATGTTAGACCAAATATGAGT---CAGT--GACTAATA  95

seq1  TTAGAGCAATATATCT----------TTATAT----CATCCTTAAGTATC  134
      ||       ||  |||          | | ||    |||  |||||||||
seq2  TTTCCTTTCTAGTTCTGAACTGCAGGTGAAATTTTCCATAATTAAGTATC  145

seq1  AAAAGGTTATATTTCTCTCTTTATATCAATGAATCACCTGGTCTGGAGTC  184
      ||||  |||||||||| |||||| || ||||| | ||||||||  |||  
seq2  AAAAATTTATATTTCTGTCTTTAAATTAATGAGTTACCTGGTCCAGAGCA  195

seq1  CTTTGTACCTTTGTCTCCCAATTCTTTATTCACAGGGA  222
      ||| ||| |||||| |||  ||||||||||||||||||
seq2  CTTAGTA-CTTTGTTTCCTGATTCTTTATTCACAGGGA  232

seq1: chr4_112763960_112765089
seq2: B6Ng01-300A19.g_65_1193

seq1  GAATTCAACTAACCTGAGATAAAAATTCACTACCCTCAAACACCTGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAACCTGAGATAAAAATTCACTACCCTCAAACACCTGAATG  50

seq1  GGCTTGGGCAGGAGTATAGGCTGCAGCAGGGTAGATTTGAAGGTGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGCAGGAGTATAGGCTGCAGCAGGGTAGATTTGAAGGTGGCTGG  100

seq1  GTTTGAGGGGCCTACAGAGAATGAAAAAGGGACATCTACACTGGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGGGCCTACAGAGAATGAAAAAGGGACATCTACACTGGAGAGAG  150

seq1  ACTTTCTGTGTTCTCTTCCACGTATGTTTCACTCCTCACACTGCCCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGTGTTCTCTTCCACGTATGTTTCACTCCTCACACTGCCCCCTT  200

seq1  CACCCCAAACAATGACATAAACAATGTGGGTCTCTTTACATTCAGTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAAACAATGACATAAACAATGTGGGTCTCTTTACATTCAGTTACT  250

seq1  CCCTATGAATAAAGAATCAGGAAACAAAGGTACAAAGTTCTCTGGACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGAATAAAGAATCAGGAAACAAAGGTACAAAGTTCTCTGGACCAG  300

seq1  GTTATTGATATAAAGAGAGAAATATAAACTTTTGCTACTTAAAGATGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGATATAAAGAGAGAAATATAAACTTTTGCTACTTAAAGATGGGA  350

seq1  AATTTCACAGGTAGTTCAAAACTAGAATGGGAATATTAGTCACTAACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACAGGTAGTTCAAAACTAGAATGGGAATATTAGTCACTAACTCC  400

seq1  AAATAGAGAGAGCAGTGATAATCGCCTGTAATGTACTAGTATTAATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGAGAGCAGTGATAATCGCCTGTAATGTACTAGTATTAATAGAA  450

seq1  ATCTGTGGCTCCAGGGAGAGAGCATAACAGATAGATATTATAATATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGCTCCAGGGAGAGAGCATAACAGATAGATATTATAATATTTAT  500

seq1  TAATTAAATAAATTTCTGTAGTTCAATGTAGACAGCACAAAAATAGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATAAATTTCTGTAGTTCAATGTAGACAGCACAAAAATAGATGG  550

seq1  TATAACAGGATGGCTGCTCTAGGAAGAGTGTTTAACAATTAAAATTTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGGATGGCTGCTCTAGGAAGAGTGTTTAACAATTAAAATTTAGT  600

seq1  TTCTTCCTATTGAGAAATATTAGTGAAAATTTGAAATAATTGCTTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTATTGAGAAATATTAGTGAAAATTTGAAATAATTGCTTTAAAA  650

seq1  ATGGTATAGAAATATATTGCTCTAATAAGTCTTATAGGATACTCATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATAGAAATATATTGCTCTAATAAGTCTTATAGGATACTCATATTT  700

seq1  TGTCTGACATGGGCTCCATGGGAATTTTAGGTTTAAATCCTGTTTTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACATGGGCTCCATGGGAATTTTAGGTTTAAATCCTGTTTTGACA  750

seq1  AGCTATCTCTCATAAGCAAGTATAAATAGATGTGTGAATCAATTTAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCTCTCATAAGCAAGTATAAATAGATGTGTGAATCAATTTAATAA  800

seq1  AGTCGGCAGGAGACTAATATTCTCTAATATGAACTCCACAGAAAATTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGCAGGAGACTAATATTCTCTAATATGAACTCCACAGAAAATTTGG  850

seq1  GTTAATATACTGACATGACAAATTAGAAAGTCTTAAAGAGGCTAAACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATACTGACATGACAAATTAGAAAGTCTTAAAGAGGCTAAACATT  900

seq1  GTGTGATTTTGAGTACTGTGGTTGTTTTATAGGTCCTTTGGCAGATCAGA  950
      ||||||||||||||||||||| |  |||||||||||||||||||||||||
seq2  GTGTGATTTTGAGTACTGTGGGTTGTTTATAGGTCCTTTGGCAGATCAGA  950

seq1  AGCTACAGGTTTTTGTGGTTTTTGGTTGAAGTGTATGCTGCTTCTTGGAA  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCTACAGGTTTTTGTGGTTTTTGG-TGAAGTGTATGCTGCTTCTTGGAA  999

seq1  AAGGTTTTGTCTTTGTGTATTT-GGAAAAGGTGACTAAGGTATATAAAAC  1049
      || ||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  AA-GTTTTGTCTTTGTGTATTTGGGAAAAGGTGACTAA-GTATATAAAAC  1047

seq1  TTCAAGAGTT-ATATGGGTAGTATTTGAAAG-AGGGAG-ACTCCTTGAAG  1096
      ||| |||||| |||| ||||||||||||||| |||||| |||||||||||
seq2  TTC-AGAGTTAATAT-GGTAGTATTTGAAAGAAGGGAGAACTCCTTGAAG  1095

seq1  T-ACTAGATTCTAGAGAATAGAACAAAAAAGTTGC  1130
      | ||||||||||||||||| |||| ||||||||||
seq2  TAACTAGATTCTAGAGAATGGAAC-AAAAAGTTGC  1129