BAC Information

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BAC

Clone NameB6Ng01-301I03
Chromosome11 (Build37)
Map Location 40,020,070 - 40,021,174
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301I03.bB6Ng01-301I03.g
ACCGA095802GA095803
length1,1141,166
definitionB6Ng01-301I03.b B6Ng01-301I03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcaaaaaggaaagcatctgattatattaataaataagagcaaa
tctaagcaattctttattcaaataatctccaacaagaaagaatgaagtgt
aagttgttccaggtatattctgggacgtgggaatgacataataattaagt
caaacctcagccctgaaaactgatagtcaaagaagcactgaagaaccaag
gaagaagacagcaaagaacaaaaatttcaagtaccatcaatgctctgcag
aatattctaacaatagacaacttaggcagtagtaagtgacaatgttggct
ctcaggatgggatgctccagatgtctttccaaactagatgaaaattaagt
tagtgtttgaatgacaagcagatagctgtgtgatgactgcataagaaata
gcacagaaagaagtgatggcttgtgccaaggccttaaaaaaatcaaccag
ccaatattttgttatagcatcctgagcagaataagacactcaagtctgtt
gatcaaaacaggaactggtacaatagaggcagagcacgtgataacatcac
tgtggacatcagcctaacatttagcagcactattgctttcactttggtag
gtaatcaacaaattggtcttcagtagtagaaagcctgccatttgccaaca
ccttcaacaccatgctcctgagaagaacactctagaagatgaaaggtatg
atggctcttcttggctgtcaacttgattacatctggaattaatttaaact
ccaatgactgggcatgcctgagagagatttttcttaatagtttgaagtag
gaagggccccttctaatccagatatttgaggaagataaacctttaatcca
ggacttttgagatggaaaacccacctctaatccaggccagtccttctgct
ggctgcctatacaatggtgttggaagtgctctctctcttgttggatgctt
tctcttgccctcatttgcaagtctatactttcactgtcatgacagtctac
ctctttgggtattgcaatgtataactgaagactagctgagacatatagcc
ccgtagaacttgtacaacctactgggaattttggaattgttccactcata
gaacagccattgtt
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgcaccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgttaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgcccggggcccagcaaa
cacagaagtggatgctcacagtcagctaatggatgggatcatagggctcc
caattggaggagctagagaaagtagccaaggagctaaaagggatctgcaa
cccttatagtgaacacattatgagcttacccagttaccccgagcctcttg
actctagctgcatatatatcaaagattgctagtcgtcatcactggaaaga
agaggccatttggtactgcaactaatgcccagtacaggtcaatacaagtg
ccaaaagggggaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40020070_40021174
seq2: B6Ng01-301I03.b_47_1160

seq1  GAATTCATCAAAAAGGAAAGCATCTGATTATATTAATAAATAAGAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAAAAGGAAAGCATCTGATTATATTAATAAATAAGAGCAAA  50

seq1  TCTAAGCAATTCTTTATTCAAATAATCTCCAACAAGAAAGAATGAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCAATTCTTTATTCAAATAATCTCCAACAAGAAAGAATGAAGTGT  100

seq1  AAGTTGTTCCAGGTATATTCTGGGACGTGGGAATGACATAATAATTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTCCAGGTATATTCTGGGACGTGGGAATGACATAATAATTAAGT  150

seq1  CAAACCTCAGCCCTGAAAACTGATAGTCAAAGAAGCACTGAAGAACCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTCAGCCCTGAAAACTGATAGTCAAAGAAGCACTGAAGAACCAAG  200

seq1  GAAGAAGACAGCAAAGAACAAAAATTTCAAGTACCATCAATGCTCTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGACAGCAAAGAACAAAAATTTCAAGTACCATCAATGCTCTGCAG  250

seq1  AATATTCTAACAATAGACAACTTAGGCAGTAGTAAGTGACAATGTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTAACAATAGACAACTTAGGCAGTAGTAAGTGACAATGTTGGCT  300

seq1  CTCAGGATGGGATGCTCCAGATGTCTTTCCAAACTAGATGAAAATTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGATGGGATGCTCCAGATGTCTTTCCAAACTAGATGAAAATTAAGT  350

seq1  TAGTGTTTGAATGACAAGCAGATAGCTGTGTGATGACTGCATAAGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTGAATGACAAGCAGATAGCTGTGTGATGACTGCATAAGAAATA  400

seq1  GCACAGAAAGAAGTGATGGCTTGTGCCAAGGCCTTAAAAAAATCAACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAAGAAGTGATGGCTTGTGCCAAGGCCTTAAAAAAATCAACCAG  450

seq1  CCAATATTTTGTTATAGCATCCTGAGCAGAATAAGACACTCAAGTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTTTGTTATAGCATCCTGAGCAGAATAAGACACTCAAGTCTGTT  500

seq1  GATCAAAACAGGAACTGGTACAATAGAGGCAGAGCACGTGATAACATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAACAGGAACTGGTACAATAGAGGCAGAGCACGTGATAACATCAC  550

seq1  TGTGGACATCAGCCTAACATTTAGCAGCACTATTGCTTTCACTTTGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACATCAGCCTAACATTTAGCAGCACTATTGCTTTCACTTTGGTAG  600

seq1  GTAATCAACAAATTGGTCTTCAGTAGTAGAAAGCCTGCCATTTGCCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAACAAATTGGTCTTCAGTAGTAGAAAGCCTGCCATTTGCCAACA  650

seq1  CCTTCAACACCATGCTCCTGAGAAGAACACTCTAGAAGATGAAAGGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAACACCATGCTCCTGAGAAGAACACTCTAGAAGATGAAAGGTATG  700

seq1  ATGGCTCTTCTTGGCTGTCAACTTGATTACATCTGGAATTAATTTAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTTCTTGGCTGTCAACTTGATTACATCTGGAATTAATTTAAACT  750

seq1  CCAATGACTGGGCATGCCTGAGAGAGATTTTTCTTAATAGTTTGAAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGACTGGGCATGCCTGAGAGAGATTTTTCTTAATAGTTTGAAGTAG  800

seq1  GAAGGGCCCCTTCTAATCCAGATATTTGAGGAAGATAAACCTTTAATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCCCCTTCTAATCCAGATATTTGAGGAAGATAAACCTTTAATCCA  850

seq1  GGACTTTTGAGATGGAAAACCCACCTCTAATCCAGGCCAGTCCTTCTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTGAGATGGAAAACCCACCTCTAATCCAGGCCAGTCCTTCTGCT  900

seq1  GGCTGCCTATACAATGGTGTTGGAAGTGCTCTCTCTCTTGTTGGATGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTATACAATGGTGTTGGAAGTGCTCTCTCTCTTGTTGGATGCTT  950

seq1  TCTCTTGCCCTCATTTGCAAGTCTATACTTTCACTGTCATGACAGTCTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCCCTCATTTGCAAGTCTATACTTTCACTGTCATGACAGTCTAC  1000

seq1  CTCTTT-GGTATTGCAATGTAT-ACTGAAGACTAGCTGAGACATATAGCC  1048
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCTTTGGGTATTGCAATGTATAACTGAAGACTAGCTGAGACATATAGCC  1050

seq1  CCGTAGA--CTGTACAA-CTACT-GGAATTTTGG-ATTGTT-CACTCATA  1092
      |||||||   ||||||| ||||| |||||||||| |||||| ||||||||
seq2  CCGTAGAACTTGTACAACCTACTGGGAATTTTGGAATTGTTCCACTCATA  1100

seq1  G-ACAGCCATTGTT  1105
      | ||||||||||||
seq2  GAACAGCCATTGTT  1114