BAC Information

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BAC

Clone NameB6Ng01-301M01
Chromosome11 (Build37)
Map Location 37,733,421 - 37,860,715
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2, LOC100039148
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301M01.bB6Ng01-301M01.g
ACCGA095983GA095984
length1,1631,076
definitionB6Ng01-301M01.b B6Ng01-301M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,859,541 - 37,860,715)(37,733,421 - 37,734,504)
sequence
gaattcactataaatatgtttgaactattttgagacaaaatagccaaggt
aatactgaaatcagtttccatcaggctggaccacactataaattacaatt
actagagaggaatattaagaattaatgactgcaagatatctgtttctcat
cagaggtatacctaaagaaaacaggcatgttaagtctgcagtgatgaaga
gaaggagatgttcaccaagacgtcaatgagtctggagtggaaatctggga
ctgtcatccagcaaggcctggaatatgctagctttgatgttttcacaatg
gcaaaaaaggggggcatgtactgatataagttaaaagagaaaatacaatt
aaggccataaaagctgtaaatggaattctttatctccatggcattcctct
gcacagctagagtgcccttctcttatctagggactctcttctccctccat
ccaaggtcgagtccccttggactagataaatgtaaagtaagggcagggat
ccactgtgctgagaaaagaaaatatggagaagaaataggaagacggtcag
tatctgtagccctcattggtatatatcccctctacaatctgtgtggttac
ccattgacagtccctgacaggctagaagcacatgaccaaaagtacatctt
atccaaggcctgaagatgatggaggtgccaacacctattaaactctccca
aaactctgttccagtgatataatagcagtaaagcaagggtaaatatataa
tagtcacctcagatttaaattccaggattcagtatattttcatttacttc
attcattcattcattcattcattcattcattgttgaaaaggaggaagtat
ttgctgacttttccatttagaaaacaagaaagttatgttactcagtaaga
tgactattctgtaccactactatggctgggaaggtgattgatagttttag
tttttattgttttctgtgaaagagccctgatgtgggagagagcaccccct
cgggatgatgttcacagaaactgaagcagcatctcagatggtattctgaa
gagtaatccagagacaagcattgccaatttctcaatgttagcatctagct
taacaggtggactaaatgcagagacggcttaaaaaatggaatgcacgccc
tgtcaggttctga
gaattcaagccaatatatatggatttgggcagttgtgaatacatgaggat
tttcaactaaatgagagcccttggaagtgtaaatacaaaacatctttaag
gaactcagagagggaagcttaggagctggagctgaaggtgaggtagaagg
aaaactgccaccaatgcctgttgtccctacaaggaacaaatgaccttatc
ctcagtgttatgtgagatcttactgtgcatgccatcacctctagagacat
aggactttttcacttcgggaatatcttctcatttcttgcttgcacaattg
aatgaggtatgcacaagtgatagagtactccaccttaaatgtgttttgac
tttgtcttattcatatagtctttaaccgtatccttacttgattcaaagtg
attccatctcaggatcttttgccccaaatctagatagctttattagtctt
taaggccagtgaaaaattaaaaccaagcctaaattctaactgtattttcc
aatttcctcttcatacactttttagctcaaaacattaatctttgccatcc
tgtcaaattctctctgtatataccttttagcgcactatgcgtggaaattc
acttatgtgattttggtcacccaccttcctaagttcccttccaacttgca
catgtctcagttggaccagtggttctcaatgagcgttcacagcttttgcc
aatgataacttgatgattgttctgtgtctaacggcctgactttagtagat
gagttagtgcaagagatgccagaagagatcgatgttccaaaaagaaagct
cacaccaaaacctctaagaaaagagcattcagaatcatttagagtttgat
agggataaataagttttataacaaaagaaattctagcacgatgagaagct
ctacagaaaaatgaactcctcagaattgagatgtatgggaattagtaatt
gacagttgatctatgtcatggtcaaatcacttcccatccctctgatgtac
tgtgtcatttctcagtaggaaacagtcacttttattccaggatgcaggat
ggttaatatacggaaatcatcatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37859541_37860715
seq2: B6Ng01-301M01.b_48_1210 (reverse)

seq1  TCAGAACAGTGACAAGGGCGTGCATTTCCATTTTTTACCCCGTCTCTGGC  50
      |||||||  |||| |||||||||| ||||||||||||  |||||||||  
seq2  TCAGAAC-CTGAC-AGGGCGTGCA-TTCCATTTTTTAAGCCGTCTCTG--  45

seq1  CAATTAAGTCCA-CTGTT-AGCTAGATGCTAACA-TGAGAAAATGGCAAT  97
        ||| |||||| ||||| ||||||||||||||| ||||||| |||||||
seq2  -CATTTAGTCCACCTGTTAAGCTAGATGCTAACATTGAGAAATTGGCAAT  94

seq1  GCTTGTCTCTTGGATTTACCTCTTCAG-ATACTATCTGAGATGCTGCTTC  146
      ||||||||| ||||||   |||||||| |||| |||||||||||||||||
seq2  GCTTGTCTC-TGGATT--ACTCTTCAGAATACCATCTGAGATGCTGCTTC  141

seq1  AGGTTTCCTGTTGAACATCATCCCCGAGGGGTGCTCTTCTCCCACATCAG  196
      ||  || ||| |||||||||||||   ||||||||| |||||||||||||
seq2  AG--TTTCTG-TGAACATCATCCCGAGGGGGTGCTC-TCTCCCACATCAG  187

seq1  GGCTTCTTTCACAGAAAACAATAAAAACTAAAACTATCAATCACCCTTCC  246
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGC-TCTTTCACAGAAAACAATAAAAACTAAAACTATCAATCA-CCTTCC  235

seq1  CAGCCATAGTAGTGGTACAGAATAGTCATCTTACTGAGTAACATAACCTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGCCATAGTAGTGGTACAGAATAGTCATCTTACTGAGTAACATAACTTT  285

seq1  CTTTGTTTTCTAAATGGAAAAGTCAGCAAATACTTCCTCCTTTTCAACAA  346
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTGTTTTCTAAATGGAAAAGTCAGCAAATACTTCCTCCTTTTCAACAA  334

seq1  TGAATGAATGAATGAATGAATGAATGAATGAAGTAAATGAAAATATACTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGAATGAATGAATGAATGAATGAAGTAAATGAAAATATACTG  384

seq1  AATCCTGGAATTTAAATCTGAGGTGACTATTATATATTTACCCTTGCTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGGAATTTAAATCTGAGGTGACTATTATATATTTACCCTTGCTTT  434

seq1  ACTGCTATTATATCACTGGAACAGAGTTTTGGGAGAGTTTAATAGGTGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATTATATCACTGGAACAGAGTTTTGGGAGAGTTTAATAGGTGTT  484

seq1  GGCACCTCCATCATCTTCAGGCCTTGGATAAGATGTACTTTTGGTCATGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTCCATCATCTTCAGGCCTTGGATAAGATGTACTTTTGGTCATGT  534

seq1  GCTTCTAGCCTGTCAGGGACTGTCAATGGGTAACCACACAGATTGTAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGCCTGTCAGGGACTGTCAATGGGTAACCACACAGATTGTAGAG  584

seq1  GGGATATATACCAATGAGGGCTACAGATACTGACCGTCTTCCTATTTCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATATACCAATGAGGGCTACAGATACTGACCGTCTTCCTATTTCTT  634

seq1  CTCCATATTTTCTTTTCTCAGCACAGTGGATCCCTGCCCTTACTTTACAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATTTTCTTTTCTCAGCACAGTGGATCCCTGCCCTTACTTTACAT  684

seq1  TTATCTAGTCCAAGGGGACTCGACCTTGGATGGAGGGAGAAGAGAGTCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAGTCCAAGGGGACTCGACCTTGGATGGAGGGAGAAGAGAGTCCC  734

seq1  TAGATAAGAGAAGGGCACTCTAGCTGTGCAGAGGAATGCCATGGAGATAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAGAGAAGGGCACTCTAGCTGTGCAGAGGAATGCCATGGAGATAA  784

seq1  AGAATTCCATTTACAGCTTTTATGGCCTTAATTGTATTTTCTCTTTTAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCATTTACAGCTTTTATGGCCTTAATTGTATTTTCTCTTTTAAC  834

seq1  TTATATCAGTACATGCCCCCCTTTTTTGCCATTGTGAAAACATCAAAGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCAGTACATGCCCCCCTTTTTTGCCATTGTGAAAACATCAAAGCT  884

seq1  AGCATATTCCAGGCCTTGCTGGATGACAGTCCCAGATTTCCACTCCAGAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTCCAGGCCTTGCTGGATGACAGTCCCAGATTTCCACTCCAGAC  934

seq1  TCATTGACGTCTTGGTGAACATCTCCTTCTCTTCATCACTGCAGACTTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGACGTCTTGGTGAACATCTCCTTCTCTTCATCACTGCAGACTTAA  984

seq1  CATGCCTGTTTTCTTTAGGTATACCTCTGATGAGAAACAGATATCTTGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTTTTCTTTAGGTATACCTCTGATGAGAAACAGATATCTTGCA  1034

seq1  GTCATTAATTCTTAATATTCCTCTCTAGTAATTGTAATTTATAGTGTGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAATTCTTAATATTCCTCTCTAGTAATTGTAATTTATAGTGTGGT  1084

seq1  CCAGCCTGATGGAAACTGATTTCAGTATTACCTTGGCTATTTTGTCTCAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGATGGAAACTGATTTCAGTATTACCTTGGCTATTTTGTCTCAA  1134

seq1  AATAGTTCAAACATATTTATAGTGAATTC  1175
      |||||||||||||||||||||||||||||
seq2  AATAGTTCAAACATATTTATAGTGAATTC  1163

seq1: chr11_37733421_37734504
seq2: B6Ng01-301M01.g_66_1141

seq1  GAATTCAAGCCAATATATATGGATTTGGGCAGTTGTGAATACATGAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCAATATATATGGATTTGGGCAGTTGTGAATACATGAGGAT  50

seq1  TTTCAACTAAATGAGAGCCCTTGGAAGTGTAAATACAAAACATCTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTAAATGAGAGCCCTTGGAAGTGTAAATACAAAACATCTTTAAG  100

seq1  GAACTCAGAGAGGGAAGCTTAGGAGCTGGAGCTGAAGGTGAGGTAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAGAGGGAAGCTTAGGAGCTGGAGCTGAAGGTGAGGTAGAAGG  150

seq1  AAAACTGCCACCAATGCCTGTTGTCCCTACAAGGAACAAATGACCTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCCACCAATGCCTGTTGTCCCTACAAGGAACAAATGACCTTATC  200

seq1  CTCAGTGTTATGTGAGATCTTACTGTGCATGCCATCACCTCTAGAGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTTATGTGAGATCTTACTGTGCATGCCATCACCTCTAGAGACAT  250

seq1  AGGACTTTTTCACTTCGGGAATATCTTCTCATTTCTTGCTTGCACAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTTTCACTTCGGGAATATCTTCTCATTTCTTGCTTGCACAATTG  300

seq1  AATGAGGTATGCACAAGTGATAGAGTACTCCACCTTAAATGTGTTTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTATGCACAAGTGATAGAGTACTCCACCTTAAATGTGTTTTGAC  350

seq1  TTTGTCTTATTCATATAGTCTTTAACCGTATCCTTACTTGATTCAAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTCATATAGTCTTTAACCGTATCCTTACTTGATTCAAAGTG  400

seq1  ATTCCATCTCAGGATCTTTTGCCCCAAATCTAGATAGCTTTATTAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCTCAGGATCTTTTGCCCCAAATCTAGATAGCTTTATTAGTCTT  450

seq1  TAAGGCCAGTGAAAAATTAAAACCAAGCCTAAATTCTAACTGTATTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCAGTGAAAAATTAAAACCAAGCCTAAATTCTAACTGTATTTTCC  500

seq1  AATTTCCTCTTCATACACTTTTTAGCTCAAAACATTAATCTTTGCCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTCTTCATACACTTTTTAGCTCAAAACATTAATCTTTGCCATCC  550

seq1  TGTCAAATTCTCTCTGTATATACCTTTTAGCGCACTATGCGTGGAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATTCTCTCTGTATATACCTTTTAGCGCACTATGCGTGGAAATTC  600

seq1  ACTTATGTGATTTTGGTCACCCACCTTCCTAAGTTCCCTTCCAACTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTGATTTTGGTCACCCACCTTCCTAAGTTCCCTTCCAACTTGCA  650

seq1  CATGTCTCAGTTGGACCAGTGGTTCTCAATGAGCGTTCACAGCTTTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCAGTTGGACCAGTGGTTCTCAATGAGCGTTCACAGCTTTTGCC  700

seq1  AATGATAACTTGATGATTGTTCTGTGTCTAACGGCCTGACTTTAGTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAACTTGATGATTGTTCTGTGTCTAACGGCCTGACTTTAGTAGAT  750

seq1  GAGTTAGTGCAAGAGATGCCAGAAGAGATCGATGTTCCAAAAAGAAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGTGCAAGAGATGCCAGAAGAGATCGATGTTCCAAAAAGAAAGCT  800

seq1  CACACCAAAACCTCTAAGAAAAGAGCATTCAGAATCATTTAGAGTTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAAAACCTCTAAGAAAAGAGCATTCAGAATCATTTAGAGTTTGAT  850

seq1  AGGGATAAATAAGTTTTATAACAAAAGAAATTCTAGCACGATGAGAAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAAATAAGTTTTATAACAAAAGAAATTCTAGCACGATGAGAAGCT  900

seq1  CTACAG-AAAATGAACTCCTCAGAATTGAGATGTTATGGAATTAGTAATT  949
      |||||| |||||||||||||||||||||||||||   |||||||||||||
seq2  CTACAGAAAAATGAACTCCTCAGAATTGAGATGTATGGGAATTAGTAATT  950

seq1  GACAAGTTGATCTATGTCATGGTCAAATCACTTCCCATCCCTCTGATGTA  999
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAC-AGTTGATCTATGTCATGGTCAAATCACTTCCCATCCCTCTGATGTA  999

seq1  CTGTTGTCATTTCTCAAGTAAGAAACAAGTCACTTTTATTCCAGGGATGC  1049
      ||| ||||||||||| |||| ||||| |||||||||||||||| ||||||
seq2  CTG-TGTCATTTCTC-AGTAGGAAAC-AGTCACTTTTATTCCA-GGATGC  1045

seq1  AGGGATGGTTTAATATACGAAAATCCATCAATGTA  1084
      | |||||| |||||||||| |||| |||| |||||
seq2  A-GGATGG-TTAATATACGGAAAT-CATC-ATGTA  1076