BAC Information

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BAC

Clone NameB6Ng01-302B03
Chromosome11 (Build37)
Map Location 35,045,642 - 35,187,824
singlet/doubletdoublet
Overlap geneSlit3, LOC100039006
Upstream geneFoxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Downstream genePank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302B03.bB6Ng01-302B03.g
ACCGA096221GA096222
length1,1231,127
definitionB6Ng01-302B03.b B6Ng01-302B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,186,700 - 35,187,824)(35,045,642 - 35,046,761)
sequence
gaattcataaatacttctagaaccaccaccacacctccaccactacagta
ctacaaaccaacaaaagggcagcttagcctccctcattagtccatctcca
tctctgtaggaacttgtctatcagagagtaaaccagctggatctagaaat
tacattcagagccatccctgtagaacagaaggcatgttctttcacattct
ttctctgatcttgttcatttgagagttccttttctgggaagctgaaggat
gcccatcccatggctgggagagcctaggcatgtgggagacctagacacct
ctgctgtgcaggatccaagaggggctgaaatcatcaagcacgagcaggtc
ttgggagagaagcacagacgtccagggacctcccagagtcacagtatgca
aataattaaacaaatggtttcacagaaatgttgtcgagaaaaggcttttc
aatttcatctccatggtgatagctcatcaaaaaagaatcaaaatgtaaat
ctaaaaattgcttcatttggctgatagaaaataataaatagggttttggg
gatttaccacgtatcgcccaccataataaccctaaactctcttggattcc
acttgtgtgcctggcttggtcctacgatgtgtctgatcaaaccatctttg
actcccatgggcgtaagagcggctcactcctccattcctggaaccccagt
cagcaccctctctccattcgcccaccttttgactccaggctacagataca
cagaagttccacaggcaggacatttctagaaataactccaagctccctgg
tgtgttaactccctgggacagagtgtccaacaacacagaaaactagcaaa
tttttgatgggttaaatttaaaaaggaaaaacaaaaaacaaaacaaaaaa
ccccgaggatgggggagggtatagggacttcaagatagcatttgaatatc
aatgaagaaaataactaataaaaatgaaaaaaaaagacaaaacaacctga
ggacatatatgttttctgctgttctaagtgaaacaccattaatctaggtc
tccacattagaatctgaacgtgtccatttgagaaacacccttgagtgaca
aaggctatgttctgtcattctaa
gaattcttcccagactttgtgcaattatgatgacaagggtggctccagac
agaaccaaagagggactcagttcttgtccaaagggtccccaagagagtcc
ttttcaggaaaggcagagtgctcagagcagatcagtgtctggagagggtg
gaagaagtcgcaactgtagatgaaaagaagcagaagaattgtagattggg
aatgggcccgggtacttttattctgtgaaggttttgagtgccctgattca
ggacctgaagctagctaactatgaccagatcctgctacagcacccctgag
agatgatgtggcctcggtctggcctggatacttggctttgaatttattat
gtaagaggcaagaggacaataacaacccagccttaagctctacttggaga
gactgccagggccgcaggaaacatagcatttggtatgcagagcagaggtt
gggagcagccatccctagcatcattatcacgagggccttcatgtgacatt
cagtattccacatgttctaggccagttcttcctggaaccagaggagtagt
gtcatttgcatttggaaaacagagggtcaaagggcttagtaacttgtcct
tagctctacagtgagagaataatccagccaagcctaaaaccagcactgat
gagcctcagtcctaacaccatgccttcagtgggaccagtgacctctatat
gctatgaagagacttatcactgaacacataggagctgctctaagcaggga
actaggttcctctgccttgagtcctccagtttcatgataagagtgtgcaa
acacgatgtcaaacgtgattttatttttttatttaagcagaaagcaacta
atggatactgaatgtagaatggtgtctacccgggatgttagaaagggaaa
atcagggagttgttaaatggatagtataatttgtgtgagacggaagtgtc
ctggagattcgtcctacagccagggagaatacagtccacatgactgtgcc
tcctacctccgaaactgtgtgctttagaaactgagagacagctattcatt
gtggtatgattcgccatcccttttaacattagaaataagattcttcaggt
aattggggttcagaaccatcgttagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_35186700_35187824
seq2: B6Ng01-302B03.b_45_1167 (reverse)

seq1  TTAGAAATGACAGAACATAGCCTTTGTCCACTTCAGGGTG--TCTCAAAT  48
      |||| |||||||||||||||||||||| ||||  ||||||  ||||||||
seq2  TTAG-AATGACAGAACATAGCCTTTGT-CACTCAAGGGTGTTTCTCAAAT  48

seq1  GACAACGTTCAGATTCTAATGT-GAGAACTAGATT-ATGGTGTTTCACTT  96
      |   |||||||||||||||||| |||| ||||||| ||||||||||||||
seq2  GGACACGTTCAGATTCTAATGTGGAGACCTAGATTAATGGTGTTTCACTT  98

seq1  AGAACAGCAG-AAACATATATGTCCTCAGGTTTGTTTTTGTCTTTTTTTT  145
      |||||||||| |||||||||||||||||||||   |||||||||||||||
seq2  AGAACAGCAGAAAACATATATGTCCTCAGGTT--GTTTTGTCTTTTTTTT  146

seq1  CAATTTTTTATTAGTTATTTTCTTCATTTATATTTCAAATGCTATCCTGA  195
        | |||||||||||||||||||||||| ||| ||||||||||||| || 
seq2  TCA-TTTTTATTAGTTATTTTCTTCATTGATA-TTCAAATGCTATCTTG-  193

seq1  AAGTCCCCTATACCCTCCCCCATCCTCGGGGTTTTTTGTTTTGTTTTTTG  245
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGT-CCCTATACCCTCCCCCATCCTCGGGGTTTTTTGTTTTGTTTTTTG  242

seq1  TTTTTCCTTTTTAAATTTAACCCATC-AAAATTTGCTAGTTTTCTGTGTT  294
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTCCTTTTTAAATTTAACCCATCAAAAATTTGCTAGTTTTCTGTGTT  292

seq1  GTTGGACACTCTGTCCCAGGGAGTTAACACACCAGGGAGCTTGGAGTTAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACACTCTGTCCCAGGGAGTTAACACACCAGGGAGCTTGGAGTTAT  342

seq1  TTCTAGAAATGTCCTGCCTGTGGAACTTCTGTGTATCTGTAGCCTGGAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAAATGTCCTGCCTGTGGAACTTCTGTGTATCTGTAGCCTGGAGT  392

seq1  CAAAAGGTGGGCGAATGGAGAGAGGGTGCTGACTGGGGTTCCAGGAATGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTGGGCGAATGGAGAGAGGGTGCTGACTGGGGTTCCAGGAATGG  442

seq1  AGGAGTGAGCCGCTCTTACGCCCATGGGAGTCAAAGATGGTTTGATCAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGAGCCGCTCTTACGCCCATGGGAGTCAAAGATGGTTTGATCAGA  492

seq1  CACATCGTAGGACCAAGCCAGGCACACAAGTGGAATCCAAGAGAGTTTAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCGTAGGACCAAGCCAGGCACACAAGTGGAATCCAAGAGAGTTTAG  542

seq1  GGTTATTATGGTGGGCGATACGTGGTAAATCCCCAAAACCCTATTTATTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTATGGTGGGCGATACGTGGTAAATCCCCAAAACCCTATTTATTA  592

seq1  TTTTCTATCAGCCAAATGAAGCAATTTTTAGATTTACATTTTGATTCTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATCAGCCAAATGAAGCAATTTTTAGATTTACATTTTGATTCTTT  642

seq1  TTTGATGAGCTATCACCATGGAGATGAAATTGAAAAGCCTTTTCTCGACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAGCTATCACCATGGAGATGAAATTGAAAAGCCTTTTCTCGACA  692

seq1  ACATTTCTGTGAAACCATTTGTTTAATTATTTGCATACTGTGACTCTGGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTGTGAAACCATTTGTTTAATTATTTGCATACTGTGACTCTGGG  742

seq1  AGGTCCCTGGACGTCTGTGCTTCTCTCCCAAGACCTGCTCGTGCTTGATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTGGACGTCTGTGCTTCTCTCCCAAGACCTGCTCGTGCTTGATG  792

seq1  ATTTCAGCCCCTCTTGGATCCTGCACAGCAGAGGTGTCTAGGTCTCCCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCCCCTCTTGGATCCTGCACAGCAGAGGTGTCTAGGTCTCCCAC  842

seq1  ATGCCTAGGCTCTCCCAGCCATGGGATGGGCATCCTTCAGCTTCCCAGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAGGCTCTCCCAGCCATGGGATGGGCATCCTTCAGCTTCCCAGAA  892

seq1  AAGGAACTCTCAAATGAACAAGATCAGAGAAAGAATGTGAAAGAACATGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTCTCAAATGAACAAGATCAGAGAAAGAATGTGAAAGAACATGC  942

seq1  CTTCTGTTCTACAGGGATGGCTCTGAATGTAATTTCTAGATCCAGCTGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTCTACAGGGATGGCTCTGAATGTAATTTCTAGATCCAGCTGGT  992

seq1  TTACTCTCTGATAGACAAGTTCCTACAGAGATGGAGATGGACTAATGAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCTGATAGACAAGTTCCTACAGAGATGGAGATGGACTAATGAGG  1042

seq1  GAGGCTAAGCTGCCCTTTTGTTGGTTTGTAGTACTGTAGTGGTGGAGGTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAAGCTGCCCTTTTGTTGGTTTGTAGTACTGTAGTGGTGGAGGTG  1092

seq1  TGGTGGTGGTTCTAGAAGTATTTATGAATTC  1125
      |||||||||||||||||||||||||||||||
seq2  TGGTGGTGGTTCTAGAAGTATTTATGAATTC  1123

seq1: chr11_35045642_35046761
seq2: B6Ng01-302B03.g_68_1194

seq1  GAATTCTTCCCAGACTTTGTGCAATTATGATGACAAGGGTGGCTCCAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCAGACTTTGTGCAATTATGATGACAAGGGTGGCTCCAGAC  50

seq1  AGAACCAAAGAGGGACTCAGTTCTTGTCCAAAGGGTCCCCAAGAGAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAAGAGGGACTCAGTTCTTGTCCAAAGGGTCCCCAAGAGAGTCC  100

seq1  TTTTCAGGAAAGGCAGAGTGCTCAGAGCAGATCAGTGTCTGGAGAGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGAAAGGCAGAGTGCTCAGAGCAGATCAGTGTCTGGAGAGGGTG  150

seq1  GAAGAAGTCGCAACTGTAGATGAAAAGAAGCAGAAGAATTGTAGATTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTCGCAACTGTAGATGAAAAGAAGCAGAAGAATTGTAGATTGGG  200

seq1  AATGGGCCCGGGTACTTTTATTCTGTGAAGGTTTTGAGTGCCCTGATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCCCGGGTACTTTTATTCTGTGAAGGTTTTGAGTGCCCTGATTCA  250

seq1  GGACCTGAAGCTAGCTAACTATGACCAGATCCTGCTACAGCACCCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGAAGCTAGCTAACTATGACCAGATCCTGCTACAGCACCCCTGAG  300

seq1  AGATGATGTGGCCTCGGTCTGGCCTGGATACTTGGCTTTGAATTTATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGTGGCCTCGGTCTGGCCTGGATACTTGGCTTTGAATTTATTAT  350

seq1  GTAAGAGGCAAGAGGACAATAACAACCCAGCCTTAAGCTCTACTTGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGGCAAGAGGACAATAACAACCCAGCCTTAAGCTCTACTTGGAGA  400

seq1  GACTGCCAGGGCCGCAGGAAACATAGCATTTGGTATGCAGAGCAGAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCAGGGCCGCAGGAAACATAGCATTTGGTATGCAGAGCAGAGGTT  450

seq1  GGGAGCAGCCATCCCTAGCATCATTATCACGAGGGCCTTCATGTGACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGCCATCCCTAGCATCATTATCACGAGGGCCTTCATGTGACATT  500

seq1  CAGTATTCCACATGTTCTAGGCCAGTTCTTCCTGGAACCAGAGGAGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTCCACATGTTCTAGGCCAGTTCTTCCTGGAACCAGAGGAGTAGT  550

seq1  GTCATTTGCATTTGGAAAACAGAGGGTCAAAGGGCTTAGTAACTTGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGCATTTGGAAAACAGAGGGTCAAAGGGCTTAGTAACTTGTCCT  600

seq1  TAGCTCTACAGTGAGAGAATAATCCAGCCAAGCCTAAAACCAGCACTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTACAGTGAGAGAATAATCCAGCCAAGCCTAAAACCAGCACTGAT  650

seq1  GAGCCTCAGTCCTAACACCATGCCTTCAGTGGGACCAGTGACCTCTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCAGTCCTAACACCATGCCTTCAGTGGGACCAGTGACCTCTATAT  700

seq1  GCTATGAAGAGACTTATCACTGAACACATAGGAGCTGCTCTAAGCAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGAAGAGACTTATCACTGAACACATAGGAGCTGCTCTAAGCAGGGA  750

seq1  ACTAGGTTCCTCTGCCTTGAGTCCTCCAGTTTCATGATAAGAGTGTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTTCCTCTGCCTTGAGTCCTCCAGTTTCATGATAAGAGTGTGCAA  800

seq1  ACACGATGTCAAACGTGATTTTATTTTTTTATTTAAGCAGAAAGCAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGATGTCAAACGTGATTTTATTTTTTTATTTAAGCAGAAAGCAACTA  850

seq1  ATGGATACTGAATGTAGAATGGTGTCTACCCGGGATGTTAG-AAGGGAAA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGGATACTGAATGTAGAATGGTGTCTACCCGGGATGTTAGAAAGGGAAA  900

seq1  ATCAGGGAGTTGTTAAATGGATAGTATAA-TTGTGTGAGACGGAAGTGTC  948
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATCAGGGAGTTGTTAAATGGATAGTATAATTTGTGTGAGACGGAAGTGTC  950

seq1  CTGGAGATTCGTCCTACAGCCA-GGAGAATACAGTCCACATGACTGTGCC  997
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGGAGATTCGTCCTACAGCCAGGGAGAATACAGTCCACATGACTGTGCC  1000

seq1  TCCTACCTCCG-AACTGTGTGC-TTAGAAACTGAGAGGACAGCTAATTTC  1045
      ||||||||||| |||||||||| ||||||||||||| ||||||||  |||
seq2  TCCTACCTCCGAAACTGTGTGCTTTAGAAACTGAGA-GACAGCTA--TTC  1047

seq1  A-TGTGGTATGATTTCGCCATCCTTTTTAACAATTAGAAATAAGAT--CT  1092
      | |||||||||| |||||||||| ||||||| ||||||||||||||   |
seq2  ATTGTGGTATGA-TTCGCCATCCCTTTTAAC-ATTAGAAATAAGATTCTT  1095

seq1  CAAGT-ATTGGGG-TCAG-ACCATCG-TAGAG  1120
      || || ||||||| |||| ||||||| |||||
seq2  CAGGTAATTGGGGTTCAGAACCATCGTTAGAG  1127