BAC Information

Click to search

BAC

Clone NameB6Ng01-302E07
Chromosome11 (Build37)
Map Location 98,976,892 - 99,117,201
singlet/doubletdoublet
Overlap geneCcr7, Smarce1, Krt222
Upstream geneFbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4
Downstream geneKrt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302E07.bB6Ng01-302E07.g
ACCGA096363GA096364
length9331,064
definitionB6Ng01-302E07.b B6Ng01-302E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,116,299 - 99,117,201)(98,976,892 - 98,977,948)
sequence
gaattcacagacattaggctttttttttctacctacttagtatcttttgg
atatttacatcccaaagagatagtttctaggtccttaaaaaaggcattcc
ctagctatgagtggttgtgcacacttctaatctcagcactcagaaggcag
aggcaggcagatctctgtgagtttgaggccagcctggtctatagtgtgag
ttccaggacagccagggctaaacacacacacacacacacacacacacaca
cacacacaccctatctcaaaaaatcaaacaaaaacaaaaaaggggggtat
ttcctattataaaaatcaagctgccaaaaagtcttcctcggcctctttgt
ctgtctgttcacttgctctggtgtgagttgtggtttgtatagagacacgt
aggcagaggttagaccgcagagcttcctgccggcgtcttcctctatcact
ctctgacatattttttttcttccagacagggtctcttccttaacctagag
tgtcccatttggctgcagacaggtggactggggatccacacccctatcct
catgcttgcgcagctgagtcatctcctcggcctgtgtttgactttccgaa
agactaaaggtttcaaaaagctaaagaaagaatttacaaaagcatgcgta
agagttcaacttaaagggaatagaggggatgctggctggatccctgattt
tgtttgttgtgagagaaggtcttgctatgtagtctttgataaccttcaaa
ctagagcctcctgcctcagcctctcaagtactcctgggattacagccatg
tacccatgcccacttcttcccttgttactgttgttgatgatgtgtgtgcg
tgcgtgcgtttgtgtgtgtgtgtgcacgtgcgtgtgcatgtctgcatgtg
tgtgtgcttgtgcatgtgtgtgctgtgtgtctg
gaattccaggacagttatgaaagagaaaccctgtctcaaatagatagata
gatagatagatagatagatagatagatagatagatagatagacagacaga
cagataagaaaaagaagaaagaaaaagaaaaagaaaagaaagcagctctt
tgacaatcatttttcaacggcttcttttcttattattccatgaccttggt
attgggtcattctctgttcaatactctctttcattatttaatggaatcta
ctttgacaaacttcaaataagttccaaagtttgcagttcagagcagcagg
gcaagaggtgcctgtagctaatgagataaaaacacacctaccactggaga
tttctagaaagggtattgttaaagttagctgtccctttgtctgcctgcct
gtggtgctctgaggggcaggtgcataggacaaagacactctctagggtgt
ggccagacaggagcccgggtcctggtgccacctcagagctccacactgcc
cagaaccacctacccctagatttcctgtcagacaagaaaaacacccccct
ttgtagtttaagttgccgacagtttctgtcctttgtagcagattcacttt
caatcgaaatacttttaaacttatgagtcgtttcctggaacatgggtgct
tttagattctgtgaaaagtaccaagcttactgaaggctggtataaaggga
gtcaactttctccccttccgtttccccatctgcccgtaagtcaggatctg
acatcctcttggaggttttggggaaagaaactttcagaggatcatctttt
tttttttctaagatatattttatgtttattttatgtgcattggtgttttg
cttggatgtatgttagaaaggtgccagatcccctataactggagccacag
agagttgtgagctaccattcggttgctgggaaattgaacccaggtcctct
ggaggagccgccagtgctcttaaccgctgagtcatctctccagcctctct
tgatgccctgttctagcattcccccactatgaagggagttgggacccccc
ccccccgggtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99116299_99117201
seq2: B6Ng01-302E07.b_77_979 (reverse)

seq1  CAGACACACAGCACACACATGCACAAGCACACACACATGCAGACATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACAGCACACACATGCACAAGCACACACACATGCAGACATGCAC  50

seq1  ACGCACGTGCACACACACACACAAACGCACGCACGCACACACATCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACGTGCACACACACACACAAACGCACGCACGCACACACATCATCAA  100

seq1  CAACAGTAACAAGGGAAGAAGTGGGCATGGGTACATGGCTGTAATCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAACAAGGGAAGAAGTGGGCATGGGTACATGGCTGTAATCCCAG  150

seq1  GAGTACTTGAGAGGCTGAGGCAGGAGGCTCTAGTTTGAAGGTTATCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTGAGAGGCTGAGGCAGGAGGCTCTAGTTTGAAGGTTATCAAAG  200

seq1  ACTACATAGCAAGACCTTCTCTCACAACAAACAAAATCAGGGATCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATAGCAAGACCTTCTCTCACAACAAACAAAATCAGGGATCCAGCC  250

seq1  AGCATCCCCTCTATTCCCTTTAAGTTGAACTCTTACGCATGCTTTTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCCTCTATTCCCTTTAAGTTGAACTCTTACGCATGCTTTTGTAA  300

seq1  ATTCTTTCTTTAGCTTTTTGAAACCTTTAGTCTTTCGGAAAGTCAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTTTAGCTTTTTGAAACCTTTAGTCTTTCGGAAAGTCAAACAC  350

seq1  AGGCCGAGGAGATGACTCAGCTGCGCAAGCATGAGGATAGGGGTGTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGAGGAGATGACTCAGCTGCGCAAGCATGAGGATAGGGGTGTGGAT  400

seq1  CCCCAGTCCACCTGTCTGCAGCCAAATGGGACACTCTAGGTTAAGGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTCCACCTGTCTGCAGCCAAATGGGACACTCTAGGTTAAGGAAGA  450

seq1  GACCCTGTCTGGAAGAAAAAAAATATGTCAGAGAGTGATAGAGGAAGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTCTGGAAGAAAAAAAATATGTCAGAGAGTGATAGAGGAAGACG  500

seq1  CCGGCAGGAAGCTCTGCGGTCTAACCTCTGCCTACGTGTCTCTATACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAGGAAGCTCTGCGGTCTAACCTCTGCCTACGTGTCTCTATACAAA  550

seq1  CCACAACTCACACCAGAGCAAGTGAACAGACAGACAAAGAGGCCGAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACTCACACCAGAGCAAGTGAACAGACAGACAAAGAGGCCGAGGAA  600

seq1  GACTTTTTGGCAGCTTGATTTTTATAATAGGAAATACCCCCCTTTTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTGGCAGCTTGATTTTTATAATAGGAAATACCCCCCTTTTTTGT  650

seq1  TTTTGTTTGATTTTTTGAGATAGGGTGTGTGTGTGTGTGTGTGTGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGATTTTTTGAGATAGGGTGTGTGTGTGTGTGTGTGTGTGTGT  700

seq1  GTGTGTGTGTGTTTAGCCCTGGCTGTCCTGGAACTCACACTATAGACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTTAGCCCTGGCTGTCCTGGAACTCACACTATAGACCAG  750

seq1  GCTGGCCTCAAACTCACAGAGATCTGCCTGCCTCTGCCTTCTGAGTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCAAACTCACAGAGATCTGCCTGCCTCTGCCTTCTGAGTGCTG  800

seq1  AGATTAGAAGTGTGCACAACCACTCATAGCTAGGGAATGCCTTTTTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGAAGTGTGCACAACCACTCATAGCTAGGGAATGCCTTTTTTAAG  850

seq1  GACCTAGAAACTATCTCTTTGGGATGTAAATATCCAAAAGATACTAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGAAACTATCTCTTTGGGATGTAAATATCCAAAAGATACTAAGTA  900

seq1  GGT  903
      |||
seq2  GGT  903

seq1: chr11_98976892_98977948
seq2: B6Ng01-302E07.g_68_1131

seq1  GAATTCCAGGACAGTTATGAAAGAGAAACCCTGTCTCAAATAGATAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGTTATGAAAGAGAAACCCTGTCTCAAATAGATAGATA  50

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGA  100

seq1  CAGATAAGAAAAAGAAGAAAGAAAAAGAAAAAGAAAAGAAAGCAGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGAAAAAGAAGAAAGAAAAAGAAAAAGAAAAGAAAGCAGCTCTT  150

seq1  TGACAATCATTTTTCAACGGCTTCTTTTCTTATTATTCCATGACCTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATCATTTTTCAACGGCTTCTTTTCTTATTATTCCATGACCTTGGT  200

seq1  ATTGGGTCATTCTCTGTTCAATACTCTCTTTCATTATTTAATGGAATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTCATTCTCTGTTCAATACTCTCTTTCATTATTTAATGGAATCTA  250

seq1  CTTTGACAAACTTCAAATAAGTTCCAAAGTTTGCAGTTCAGAGCAGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAAACTTCAAATAAGTTCCAAAGTTTGCAGTTCAGAGCAGCAGG  300

seq1  GCAAGAGGTGCCTGTAGCTAATGAGATAAAAACACACCTACCACTGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGTGCCTGTAGCTAATGAGATAAAAACACACCTACCACTGGAGA  350

seq1  TTTCTAGAAAGGGTATTGTTAAAGTTAGCTGTCCCTTTGTCTGCCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAAAGGGTATTGTTAAAGTTAGCTGTCCCTTTGTCTGCCTGCCT  400

seq1  GTGGTGCTCTGAGGGGCAGGTGCATAGGACAAAGACACTCTCTAGGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTCTGAGGGGCAGGTGCATAGGACAAAGACACTCTCTAGGGTGT  450

seq1  GGCCAGACAGGAGCCCGGGTCCTGGTGCCACCTCAGAGCTCCACACTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGACAGGAGCCCGGGTCCTGGTGCCACCTCAGAGCTCCACACTGCC  500

seq1  CAGAACCACCTACCCCTAGATTTCCTGTCAGACAAGAAAAACACCCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCACCTACCCCTAGATTTCCTGTCAGACAAGAAAAACACCCCCCT  550

seq1  TTGTAGTTTAAGTTGCCGACAGTTTCTGTCCTTTGTAGCAGATTCACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTTAAGTTGCCGACAGTTTCTGTCCTTTGTAGCAGATTCACTTT  600

seq1  CAATCGAAATACTTTTAAACTTATGAGTCGTTTCCTGGAACATGGGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCGAAATACTTTTAAACTTATGAGTCGTTTCCTGGAACATGGGTGCT  650

seq1  TTTAGATTCTGTGAAAAGTACCAAGCTTACTGAAGGCTGGTATAAAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTCTGTGAAAAGTACCAAGCTTACTGAAGGCTGGTATAAAGGGA  700

seq1  GTCAACTTTCTCCCCTTCCGTTTCCCCATCTGCCCGTAAGTCAGGATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTTTCTCCCCTTCCGTTTCCCCATCTGCCCGTAAGTCAGGATCTG  750

seq1  ACATCCTCTTGGAGGTTTTGGGGAAAGAAACTTTCAGAGGATCATC-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATCCTCTTGGAGGTTTTGGGGAAAGAAACTTTCAGAGGATCATCTTTT  800

seq1  TTTTTTTCTAAGATATA-TTTATGTTTATTTTATGTGCATTGGTGTTTTG  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTAAGATATATTTTATGTTTATTTTATGTGCATTGGTGTTTTG  850

seq1  CTTGGATGTATGTTAG-AAGGTGCCAGATCCCCTATAACTGGAGCCACAG  897
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTGGATGTATGTTAGAAAGGTGCCAGATCCCCTATAACTGGAGCCACAG  900

seq1  AGAGTTGTGAGCTACCATTCGGTTGCTGGG-AATTGAACCCAGGTCCTCT  946
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAGTTGTGAGCTACCATTCGGTTGCTGGGAAATTGAACCCAGGTCCTCT  950

seq1  GGAGGAGCCGCCAGTGCTCTTAACCGCTGAGTCATCTCTCCAGCCTCTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCCGCCAGTGCTCTTAACCGCTGAGTCATCTCTCCAGCCTCTCT  1000

seq1  TGATGCCCTG-TCTAGCATT-CCCCACTATGAAGGGAGGTGGGA-CCCCC  1043
      |||||||||| ||||||||| ||||||||||||||||| ||||| |||||
seq2  TGATGCCCTGTTCTAGCATTCCCCCACTATGAAGGGAGTTGGGACCCCCC  1050

seq1  CCCCCCGGGTGTGG  1057
      ||||||||||||||
seq2  CCCCCCGGGTGTGG  1064