BAC Information

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BAC

Clone NameB6Ng01-302O10
Chromosome11 (Build37)
Map Location 96,113,330 - 96,246,842
singlet/doubletdoublet
Overlap geneGm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1
Upstream geneTac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639
Downstream geneLOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302O10.bB6Ng01-302O10.g
ACCGA096832GA096833
length7461,058
definitionB6Ng01-302O10.b B6Ng01-302O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,113,330 - 96,114,070)(96,245,790 - 96,246,842)
sequence
gaattcaaggacgcgccgacctccctccccaatatctctggctcaacttc
tccactccaacgcgggggtacgggctcagggtcccctccccttgttccac
cgcatttccatctactccagttcttcctgctcacaagcctagactgtaat
aggacctaaggcgacagaggtgatctgccctaaatggcctccctggtggg
gattacttcgaagagaaaagtggccattcctttcccgacaaaaaatgaag
cacttctgtctgggtgggtccagaggagagccccaggtgcagaaccaatg
tgcacgctctctttgctctgtagctgccccccacccccaccccaccccca
atgaatggagaaagaatgaagaacgctgggttcttttgtctttgagaggc
tgtggaaaaaaaaatccaggtcccttaccctctagattgcgggttttgat
gagactcgggggtgcctcttgccaaggagagcatgcatcccactgagggg
tctagacgccgccatcttactcgaaattcacatccacagaaacgctgcta
tatgtgagtgcgggtttttgtagaagggcctgttgttttttgcacaaggg
tcgggaggtgggggggaattgaaatctataggtgtggtttctggagatac
cgaaaccatgcgaggttttaaaaaaggcatgtataagagagagtaagcac
catagaggccacgcacccgtgggttttgtggagtctctgaaggagt
gccagcctgagacacacatgattctgacacaaggaaataaaaagggtgtg
ttaagtactcaacaagtagctggtaggattagaagaatatgcaaaaaatc
atagagattcctggattatattccagctgttcccagaggctaatgctcag
ggttctgtgtgacccttatagccatggtgatgggaagctgaggggtgtgg
atatttcacctggaggggcagagactggagtggaggaagccatcatgacc
actttatgatagctgagcagcgccgggagcaaaggctaaatgtttcagga
aaataaatttagctttaagtaaggaagaacagtcagagtggcttgaggag
aaaagtgagtgtgtcaggaaggcctgggactcctgtctctggtgatgggt
gggttatagtcagaggctggacaaccactgcatggaaacactatctaagt
catgaacaggggattgggccagatgatctttttatggtccttcagcatgc
tctaaaacgctgttaaaatatgtggacacaatgctatagattaacgttag
tgagacaaatgtctcccttaatatacttagcactgttatttaaatctcag
agatctttattttatatgaagaaggtgagaaaaccaaaaattgaatggat
ttgctgagtctgtcagctattaatatctatctttactgagtgttggaccg
gcttgatctttattctcctactcattcatttatcttttcaataacttcat
aaatatttacaggatatatattttcctaggtattaaagatgcaaaaataa
tagatggataaatgcatgataaagagcgatgggatgcgtgccagcgtggg
aggaaagaggcctgcgttggctctgggggatggtggggaaaggcttctca
aggaaggaaacatctgaactgcaacttcagaggataattaaagtttttct
agaatatgactggggtagaaaattcattcaagcagaagaaaccagcttta
ttaaggtctaaaggtcgaatggctagtttcgaggggcaaggttccagtta
cgaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96113330_96114070
seq2: B6Ng01-302O10.b_46_791

seq1  GAATTCAAGGACGCGCCGACCTCCCTCCCCAATATCTCTGGCTCAACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACGCGCCGACCTCCCTCCCCAATATCTCTGGCTCAACTTC  50

seq1  TCCACTCCAACGCGGGGGTACGGGCTCAGGGTCCCCTCCCCTTGTTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCAACGCGGGGGTACGGGCTCAGGGTCCCCTCCCCTTGTTCCAC  100

seq1  CGCATTTCCATCTACTCCAGTTCTTCCTGCTCACAAGCCTAGACTGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTTCCATCTACTCCAGTTCTTCCTGCTCACAAGCCTAGACTGTAAT  150

seq1  AGGACCTAAGGCGACAGAGGTGATCTGCCCTAAATGGCCTCCCTGGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTAAGGCGACAGAGGTGATCTGCCCTAAATGGCCTCCCTGGTGGG  200

seq1  GATTACTTCGAAGAGAAAAGTGGCCATTCCTTTCCCGACAAAAAATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTCGAAGAGAAAAGTGGCCATTCCTTTCCCGACAAAAAATGAAG  250

seq1  CACTTCTGTCTGGGTGGGTCCAGAGGAGAGCCCCAGGTGCAGAACCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGTCTGGGTGGGTCCAGAGGAGAGCCCCAGGTGCAGAACCAATG  300

seq1  TGCACGCTCTCTTTGCTCTGTAGCTGCCCCCCACCCCCACCCCACCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCTCTCTTTGCTCTGTAGCTGCCCCCCACCCCCACCCCACCCCCA  350

seq1  ATGAATGGAGAAAGAATGAAGAACGCTGGGTTCTTTTGTCTTTGAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGAGAAAGAATGAAGAACGCTGGGTTCTTTTGTCTTTGAGAGGC  400

seq1  TGTGGAAAAAAAAATCCAGGTCCCTTACCCTCTAGATTGCGGGTTTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAAAAAAATCCAGGTCCCTTACCCTCTAGATTGCGGGTTTTGAT  450

seq1  GAGACTCGGGGGTGCCTCTTGCCAAGGAGAGCATGCATCCCACTGAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCGGGGGTGCCTCTTGCCAAGGAGAGCATGCATCCCACTGAGGGG  500

seq1  TCTAGACGCCGCCATCTTACTCGAAATTCACATCCACAGAAACGCTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACGCCGCCATCTTACTCGAAATTCACATCCACAGAAACGCTGCTA  550

seq1  TATGTGAGTGCGGGTTTTTGTAGAAGGGCCTGTTGTTTTTTGCACAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGTGCGGGTTTTTGTAGAAGGGCCTGTTGTTTTTTGCACAAGGG  600

seq1  TCGGGAGGTGGGGGGGAATTGAAATCTATAGGTGTGGTTTCTGGAGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGGTGGGGGGGAATTGAAATCTATAGGTGTGGTTTCTGGAGATAC  650

seq1  CGAAACCATGCGAGGTTT--AAAAAGGCATGTA-GAGAGAGAGTAAGCA-  696
      ||||||||||||||||||  |||||||||||||  |||||||||||||| 
seq2  CGAAACCATGCGAGGTTTTAAAAAAGGCATGTATAAGAGAGAGTAAGCAC  700

seq1  CAGAGAGGCCACGCACCCGTGGGTTTTGTGGAGTCTCTG-AGGAGT  741
      || |||||||||||||||||||||||||||||||||||| ||||||
seq2  CATAGAGGCCACGCACCCGTGGGTTTTGTGGAGTCTCTGAAGGAGT  746

seq1: chr11_96245790_96246842
seq2: B6Ng01-302O10.g_76_1133 (reverse)

seq1  TCCACTCGT-ACTGGATACTTGCCCCTCCGAAACCTAG-CATTCGACCTT  48
      |||| |||| ||||||  ||||||||| ||||| |||| |||||||||||
seq2  TCCATTCGTAACTGGAACCTTGCCCCT-CGAAA-CTAGCCATTCGACCTT  48

seq1  T-GACCTTTAATAAGCT-GTTTCTCTTGCCTGAATG-ATTTTCTACCCAG  95
      | |||||| |  ||||| ||||||  ||| |||||| |||||||||||  
seq2  TAGACCTTAATAAAGCTGGTTTCTTCTGCTTGAATGAATTTTCTACCCCA  98

seq1  TTCATA-TCTAGAAAAACTTTTATTTTATCTTCTG-AGTTGCAGTTCAGA  143
       ||||| |||||||||||||| |  ||||| |||| ||||||||||||||
seq2  GTCATATTCTAGAAAAACTTTAA--TTATCCTCTGAAGTTGCAGTTCAGA  146

seq1  TG-TTCCTTCCTTGAGAAGCC-TTCCCCACCAT-CCCCAGAGCCAACGCA  190
      || |||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TGTTTCCTTCCTTGAGAAGCCTTTCCCCACCATCCCCCAGAGCCAACGCA  196

seq1  GGCCTCTTTCCTCCCACGCTGGCACGCATCCCATCGCTCTTTATCATGCA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTTCCTCCCACGCTGGCACGCATCCCATCGCTCTTTATCATGCA  246

seq1  TTTATCCATCTATTTATTTTTGCATCTTTAATACCTAGGAAAATATATAT  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTATCCATCTA-TTATTTTTGCATCTTTAATACCTAGGAAAATATATAT  295

seq1  CCTGTAAATATTTATGAAGTTATTGAAAAGATAAATGAATGAGTAGGAGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAATATTTATGAAGTTATTGAAAAGATAAATGAATGAGTAGGAGA  345

seq1  ATAAAGATCAAGCCGGTCCAACACTCAGTAAAGATAGATATTAATAGCTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATCAAGCCGGTCCAACACTCAGTAAAGATAGATATTAATAGCTG  395

seq1  ACAGACTCAGCAAATCCATTCAATTTTTGGTTTTCTCACCTTCTTCATAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCAGCAAATCCATTCAATTTTTGGTTTTCTCACCTTCTTCATAT  445

seq1  AAAATAAAGATCTCTGAGATTTAAATAACAGTGCTAAGTATATTAAGGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGATCTCTGAGATTTAAATAACAGTGCTAAGTATATTAAGGGA  495

seq1  GACATTTGTCTCACTAACGTTAATCTATAGCATTGTGTCCACATATTTTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGTCTCACTAACGTTAATCTATAGCATTGTGTCCACATATTTTA  545

seq1  ACAGCGTTTTAGAGCATGCTGAAGGACCATAAAAAGATCATCTGGCCCAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGTTTTAGAGCATGCTGAAGGACCATAAAAAGATCATCTGGCCCAA  595

seq1  TCCCCTGTTCATGACTTAGATAGTGTTTCCATGCAGTGGTTGTCCAGCCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTTCATGACTTAGATAGTGTTTCCATGCAGTGGTTGTCCAGCCT  645

seq1  CTGACTATAACCCACCCATCACCAGAGACAGGAGTCCCAGGCCTTCCTGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTATAACCCACCCATCACCAGAGACAGGAGTCCCAGGCCTTCCTGA  695

seq1  CACACTCACTTTTCTCCTCAAGCCACTCTGACTGTTCTTCCTTACTTAAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACTTTTCTCCTCAAGCCACTCTGACTGTTCTTCCTTACTTAAA  745

seq1  GCTAAATTTATTTTCCTGAAACATTTAGCCTTTGCTCCCGGCGCTGCTCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATTTATTTTCCTGAAACATTTAGCCTTTGCTCCCGGCGCTGCTCA  795

seq1  GCTATCATAAAGTGGTCATGATGGCTTCCTCCACTCCAGTCTCTGCCCCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCATAAAGTGGTCATGATGGCTTCCTCCACTCCAGTCTCTGCCCCT  845

seq1  CCAGGTGAAATATCCACACCCCTCAGCTTCCCATCACCATGGCTATAAGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGAAATATCCACACCCCTCAGCTTCCCATCACCATGGCTATAAGG  895

seq1  GTCACACAGAACCCTGAGCATTAGCCTCTGGGAACAGCTGGAATATAATC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACAGAACCCTGAGCATTAGCCTCTGGGAACAGCTGGAATATAATC  945

seq1  CAGGAATCTCTATGATTTTTTGCATATTCTTCTAATCCTACCAGCTACTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCTCTATGATTTTTTGCATATTCTTCTAATCCTACCAGCTACTT  995

seq1  GTTGAGTACTTAACACACCCTTTTTATTTCCTTGTGTCAGAATCATGTGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTACTTAACACACCCTTTTTATTTCCTTGTGTCAGAATCATGTGT  1045

seq1  GTCTCAGGCTGGC  1053
      |||||||||||||
seq2  GTCTCAGGCTGGC  1058