BAC Information

Click to search

BAC

Clone NameB6Ng01-303B06
Chromosome5 (Build37)11 (Build37)
Map Location 17,953,131 - 17,953,47882,895,711 - 82,896,866
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303B06.bB6Ng01-303B06.g
ACCGA096966GA096967
length9451,159
definitionB6Ng01-303B06.b B6Ng01-303B06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,953,131 - 17,953,478)(82,895,711 - 82,896,866)
sequence
gaattcctatttttctctccaagtgtgatttctccaataaacagaaccag
ttcagcatagtctgtgtcctgatcaacaatgatgtttgttttccaatcac
tgcctctgtttcccagatgaagtcctttcctggaagacagacagagtcat
tacaaaaggatctacacagttagaggcaattctgcttaacctcacaaaga
gcacaaccatctcagctgcactggatgagcaagtatgaaggtcagatgtg
acatttgtttagggactgtggtagtttgaatatccttggcccatggaaag
tggcacttgtaggagctgtagccttattggaaaaggtgtgtccttgttgg
aggaagtgtgttactgggcagatggtcttatagggctcctagtgttcaag
ttctgtttagggcagaagggagttccatcctggtttccttaggattaaaa
tgtagtactattggcctccaggatcatgtctgcctgcatgctgctatctt
tttttttttccttttttattttttctcttttttttattacgtattttcct
caattacatttccaatgctatctcaaaagtcccccacagcctccccccca
ctcccctacccacccattcccattttttggccctgcgttcccctgtactg
gggcatataaagtttgcctgaccaatgggcctctctttccagtgatggcc
gactaggccatcttttgatacatatgcagctagagtcaagagctctgggg
tactggttagttcataatgttgttccaccgatagggttgcagatctcttt
agctccttggatactttctctagctcctccattgggggaccctgtgatcc
atccaatagctgactgtgagcatccacttctgtgttttgcttaggccccg
gcctaattctcacaaagagacagctatattcacggtcctttgcaa

gaattcctcctcgtcatctcttttcaattcatgatactctgatttccaaa
taagatggtcaccatcgctaagaactgttcttactagggtattccaatcc
ccaggagtcagccacttctctgctgtagattccaggattgcaagagagag
taaaaggagcagtggcaccatattgtgacactgcatttaaaattctttaa
taatttggaaattgaaacctgtgtgatgtctccaagcaacctcttgagca
tctatggtctctgatacaggggaagcctcagcctctccctcttctgggct
acctgtggctgaattaaagccagagggcaggggctgtctttggactccac
gttgaggaactcaaggacctgggggattttctcaggtggctttgccctcc
cgagatgtcttcctagtcttcaataattgtttaatgaagtcctgataatt
aaacaagtgtttaattacatctttaagtcttcaattcttgtttaattaag
tcctgatactcttcctctaattctagttgttgttttagggctgagatttt
gtccttcaaaatcctttctaggatccaagacagccatccctaggacacca
tcgggtagtccagggggtgcaaatggaagagacctctgaaaggagggcca
ttcacgatcatgatatttggccacctcttcttccagggtatccctgtctg
actcagagaacatacagtgatggacaattgccacaaagaacatttcaatg
cagattatgaaaccctgcaggactatgaccacagcttctgcattttgcca
ttcctaggtatgcttttctgaaataaccaacaaagcaataagtactgctt
gctaaaaggaaacaaaaatccaggagtttcacacagagaaacttgctaat
gtaagaccccaactcaatgtgtttcttggaccccctagaaacgaagccca
gcatggaagttctttgctctttagctttcagactgaaaagaagccaacat
ggagttctttggttcttttttgcccttcagcctgaagaacagtgaaccgc
ctgggtgaacccacccagggcacttgaccattgtgttacgacagatgttt
tacacaacttccttggcttgtgatcgaattcatcttacttccgtgaaaga
aagatgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17953131_17953478
seq2: B6Ng01-303B06.b_547_904

seq1  TTTTTTTTCC-TTTTTATTTTT----TTTTTTTTATTACGTATTTTCCTC  45
      |||||||||| |||||||||||    ||||||||||||||||||||||||
seq2  TTTTTTTTCCTTTTTTATTTTTTCTCTTTTTTTTATTACGTATTTTCCTC  50

seq1  AATTACATTTCCAATGCTATCCCAAAAGTCTCCCACA-----CCCCCCAC  90
      ||||||||||||||||||||| |||||||| ||||||     ||||||||
seq2  AATTACATTTCCAATGCTATCTCAAAAGTCCCCCACAGCCTCCCCCCCAC  100

seq1  TCCCTTACCCACCCATTCCCATTTTTTGGCCCTGACGTTCCCCTGTACTG  140
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCCCTACCCACCCATTCCCATTTTTTGGCCCTG-CGTTCCCCTGTACTG  149

seq1  GGGCATATAAAGTTTGCCTGTCCAGTGGGCCTCTCTTTCCAGTGATGGCC  190
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  GGGCATATAAAGTTTGCCTGACCAATGGGCCTCTCTTTCCAGTGATGGCC  199

seq1  GACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGG  249

seq1  TACTGGTTAGTTCATAATGTTGTTCCACCGATAGGGTTGCAGATCTCTTT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTAGTTCATAATGTTGTTCCACCGATAGGGTTGCAGATCTCTTT  299

seq1  AGCTCCTTGTATACTTTCTCTAGCTCCTCCATTGGGGG-CCCTGTGATCC  339
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  AGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGACCCTGTGATCC  349

seq1  ATCCAATAG  348
      |||||||||
seq2  ATCCAATAG  358


seq1: chr11_82895711_82896866
seq2: B6Ng01-303B06.g_66_1224

seq1  GAATTCCTCCTCGTCATCTCTTTTCAATTCATGATACTCTGATTTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTCGTCATCTCTTTTCAATTCATGATACTCTGATTTCCAAA  50

seq1  TAAGATGGTCACCATCGCTAAGAACTGTTCTTACTAGGGTATTCCAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGTCACCATCGCTAAGAACTGTTCTTACTAGGGTATTCCAATCC  100

seq1  CCAGGAGTCAGCCACTTCTCTGCTGTAGATTCCAGGATTGCAAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTCAGCCACTTCTCTGCTGTAGATTCCAGGATTGCAAGAGAGAG  150

seq1  TAAAAGGAGCAGTGGCACCATATTGTGACACTGCATTTAAAATTCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAGCAGTGGCACCATATTGTGACACTGCATTTAAAATTCTTTAA  200

seq1  TAATTTGGAAATTGAAACCTGTGTGATGTCTCCAAGCAACCTCTTGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGAAATTGAAACCTGTGTGATGTCTCCAAGCAACCTCTTGAGCA  250

seq1  TCTATGGTCTCTGATACAGGGGAAGCCTCAGCCTCTCCCTCTTCTGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGTCTCTGATACAGGGGAAGCCTCAGCCTCTCCCTCTTCTGGGCT  300

seq1  ACCTGTGGCTGAATTAAAGCCAGAGGGCAGGGGCTGTCTTTGGACTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGGCTGAATTAAAGCCAGAGGGCAGGGGCTGTCTTTGGACTCCAC  350

seq1  GTTGAGGAACTCAAGGACCTGGGGGATTTTCTCAGGTGGCTTTGCCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGAACTCAAGGACCTGGGGGATTTTCTCAGGTGGCTTTGCCCTCC  400

seq1  CGAGATGTCTTCCTAGTCTTCAATAATTGTTTAATGAAGTCCTGATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATGTCTTCCTAGTCTTCAATAATTGTTTAATGAAGTCCTGATAATT  450

seq1  AAACAAGTGTTTAATTACATCTTTAAGTCTTCAATTCTTGTTTAATTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTGTTTAATTACATCTTTAAGTCTTCAATTCTTGTTTAATTAAG  500

seq1  TCCTGATACTCTTCCTCTAATTCTAGTTGTTGTTTTAGGGCTGAGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATACTCTTCCTCTAATTCTAGTTGTTGTTTTAGGGCTGAGATTTT  550

seq1  GTCCTTCAAAATCCTTTCTAGGATCCAAGACAGCCATCCCTAGGACACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAAAATCCTTTCTAGGATCCAAGACAGCCATCCCTAGGACACCA  600

seq1  TCGGGTAGTCCAGGGGGTGCAAATGGAAGAGACCTCTGAAAGGAGGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTAGTCCAGGGGGTGCAAATGGAAGAGACCTCTGAAAGGAGGGCCA  650

seq1  TTCACGATCATGATATTTGGCCACCTCTTCTTCCAGGGTATCCCTGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGATCATGATATTTGGCCACCTCTTCTTCCAGGGTATCCCTGTCTG  700

seq1  ACTCAGAGAACATACAGTGATGGACAATTGCCACAAAGAACATTTCAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGAACATACAGTGATGGACAATTGCCACAAAGAACATTTCAATG  750

seq1  CAGATTATGAAACCCTGCAGGACTATGACCACAGCTTCTGCATTTTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATGAAACCCTGCAGGACTATGACCACAGCTTCTGCATTTTGCCA  800

seq1  TTCCTAGGTATGCTTTTCTGAAATAACCAACAAAGCAATAAGTACTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGTATGCTTTTCTGAAATAACCAACAAAGCAATAAGTACTGCTT  850

seq1  GCTAAAAGGAAAC-AAAATCCAGGAGTTTCACACAGAGAAACTTGCTAAT  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGGAAACAAAAATCCAGGAGTTTCACACAGAGAAACTTGCTAAT  900

seq1  GTAAGACCCCAACTCAATGTGTTTCTTGGA-CCCCTAGAAACGAAGCCCA  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAAGACCCCAACTCAATGTGTTTCTTGGACCCCCTAGAAACGAAGCCCA  950

seq1  GCATGG-AGTTCTTTGCTCTTTAGCTTTCAGACTG-AAAGAAGCCCAACA  996
      |||||| |||||||||||||||||||||||||||| ||||||| ||||||
seq2  GCATGGAAGTTCTTTGCTCTTTAGCTTTCAGACTGAAAAGAAG-CCAACA  999

seq1  TGGAGTTCTTT-GTTCTTTTTTG-CCTTCAGCCTGAAAGAACAGTG-ACC  1043
      ||||||||||| ||||||||||| ||||||||||| |||||||||| |||
seq2  TGGAGTTCTTTGGTTCTTTTTTGCCCTTCAGCCTG-AAGAACAGTGAACC  1048

seq1  G-CTGGGTG-ACCCACCCA-GGCACCTGACCCATTGTGTAAGGGACCAAG  1090
      | ||||||| ||||||||| ||||| ||| ||||||||| |  |||  ||
seq2  GCCTGGGTGAACCCACCCAGGGCACTTGA-CCATTGTGTTA-CGAC--AG  1094

seq1  AATGTTTACACAACTTCCCTGGTCTTTGTGATCGAATCCTCCCCTCACTT  1140
      |   |||||||||||||| |||   ||||||||||||  ||  || || |
seq2  ATGTTTTACACAACTTCCTTGG--CTTGTGATCGAAT--TCATCTTAC-T  1139

seq1  TCCGT----GAGAGATGAGC  1156
      |||||    || ||||||||
seq2  TCCGTGAAAGAAAGATGAGC  1159


| Home | SequenceCutter | Blast | Download |