MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-303M18
Chromosome	11 (Build37)
Map Location	33,659,647 - 33,817,424
singlet/doublet	doublet
Overlap gene	Kcnip1
Upstream gene	LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik
Downstream gene	Kcnmb1, Lcp2, Foxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC666616 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666616
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	1700008A04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69351 MGI:1916601
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC666620 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666620
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	LOC670035 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC432548 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:432548
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 mRNAs, 2332 ESTs, 13 Proteins

name	Fgf18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14172 MGI:1277980
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Npm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18148 MGI:106184
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666646 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666646
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 38 ESTs, 6 Proteins pseudo : _no_value

name	Tlx3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27140 MGI:1351209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ranbp17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66011 MGI:1929706
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666258 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666258
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins pseudo : _no_value

name	Anp32c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:448829 MGI:3525200
definition	gene_synonym : Anp32cl note : acidic leucine-rich nuclear phosphoprotein 32 family member C pseudo : _no_value

name	LOC669306 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669306
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 48 ESTs, 3 Proteins pseudo : _no_value

name	LOC666269 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 13 Proteins pseudo : _no_value

name	Gabrp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216643 MGI:2387597
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D130052B06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216644 MGI:2685092
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70357 MGI:1917607
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnmb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16533 MGI:1334203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lcp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16822 MGI:1321402
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxi1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14233 MGI:1096329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dock2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94176 MGI:2149010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG574403 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:574403 MGI:3643491
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dock2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94176 MGI:2149010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc99 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70385 MGI:1917635
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038976 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038976
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	1700008A04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94389934 GeneID:69351 MGI:1916601
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 1700008A04 gene, transcript variant 1 transcript_id : XM_126070.5

name	LOC670035 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261661 GeneID:670035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to Mnn4p transcript_id : XM_001478417.1

name	LOC432548 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261696 GeneID:432548
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 mRNAs, 2332 ESTs, 13 Proteins product : similar to 37kDa oncofetal antigen transcript_id : XM_484006.5

name	Fgf18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679780 GeneID:14172 MGI:1277980
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibroblast growth factor 18 transcript_id : NM_008005.1

name	Npm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357495 GeneID:18148 MGI:106184
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleophosmin 1 transcript_id : NM_008722.2

name	Tlx3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9910537 GeneID:27140 MGI:1351209
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-cell leukemia, homeobox 3 transcript_id : NM_019916.1

name	Ranbp17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13249348 GeneID:66011 MGI:1929706
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAN binding protein 17 transcript_id : NM_023146.1

name	Gabrp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131004 GeneID:216643 MGI:2387597
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA-A) receptor, pi transcript_id : NM_146017.3

name	Kcnip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27754024 GeneID:70357 MGI:1917607
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Kv channel-interacting protein 1 transcript_id : NM_027398.2

name	Kcnmb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381129 GeneID:16533 MGI:1334203
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium large conductance calcium-activated channel, subfamily M, beta member 1 transcript_id : NM_031169.3

name	Lcp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130099 GeneID:16822 MGI:1321402
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lymphocyte cytosolic protein 2 transcript_id : NM_010696.3

name	Foxi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802758 GeneID:14233 MGI:1096329
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box I1 transcript_id : NM_023907.3

name	Dock2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117553624 GeneID:94176 MGI:2149010
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dedicator of cyto-kinesis 2 transcript_id : NM_033374.2

name	EG574403 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701577 GeneID:574403 MGI:3643491
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG574403 transcript_id : NM_001025382.1

name	Dock2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117553624 GeneID:94176 MGI:2149010
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dedicator of cyto-kinesis 2 transcript_id : NM_033374.2

name	Ccdc99 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22296586 GeneID:70385 MGI:1917635
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 99 transcript_id : NM_027411.1

name	LOC100038976 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261848 GeneID:100038976
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100038976 transcript_id : XM_001472048.1

name	1700008A04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82933803 GeneID:69351 MGI:1916601
definition	codon_start : 1 product : hypothetical protein LOC69351 isoform 1 protein_id : XP_126070.3

name	LOC670035 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261662 GeneID:670035
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478467.1

name	LOC432548 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:51766344 GeneID:432548
definition	codon_start : 1 product : hypothetical protein protein_id : XP_484006.1

name	Fgf18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679781 CCDS:CCDS24531.1 GeneID:14172 MGI:1277980
definition	GO_function : GO:0005104 - fibroblast growth factor receptor binding [Evidence TAS]; GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0030324 - lung development [Evidence IMP]; GO:0001503 - ossification [Evidence IMP]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 function : stimulates hepatic and intestinal proliferation product : fibroblast growth factor 18 protein_id : NP_032031.1

name	Npm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679108 CCDS:CCDS24532.1 GeneID:18148 MGI:106184
definition	GO_component : GO:0005813 - centrosome [Evidence ISS]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0051059 - NF-kappaB binding [Evidence ISS]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA]; GO:0019843 - rRNA binding [Evidence IDA]; GO:0051082 - unfolded protein binding [Evidence ISS] GO_process : GO:0007569 - cell aging [Evidence ISS]; GO:0007098 - centrosome cycle [Evidence ISS]; GO:0006886 - intracellular protein transport [Evidence ISS]; GO:0008285 - negative regulation of cell proliferation [Evidence ISS]; GO:0006913 - nucleocytoplasmic transport [Evidence ISS]; GO:0008104 - protein localization [Evidence IMP]; GO:0043516 - regulation of DNA damage response, signal transduction by p53 class mediator [Evidence IGI] codon_start : 1 note : nucleolar protein NO38 product : nucleophosmin 1 protein_id : NP_032748.1

name	Tlx3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910538 CCDS:CCDS24533.1 GeneID:27140 MGI:1351209
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0001708 - cell fate specification [Evidence IMP] [Evidence IGI]; GO:0007417 - central nervous system development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0045665 - negative regulation of neuron differentiation [Evidence IGI]; GO:0030182 - neuron differentiation [Evidence IMP]; GO:0048665 - neuron fate specification [Evidence IGI]; GO:0001764 - neuron migration [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007585 - respiratory gaseous exchange [Evidence IMP] codon_start : 1 exception : mismatches in translation note : respiratory neuron homeobox; homeo box 11-like 2 product : T-cell leukemia, homeobox 3 protein_id : NP_064300.1

name	Ranbp17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13249349 CCDS:CCDS24534.1 GeneID:66011 MGI:1929706
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0008565 - protein transporter activity [Evidence IEA]; GO:0008536 - Ran GTPase binding [Evidence TAS] GO_process : GO:0006913 - nucleocytoplasmic transport [Evidence TAS]; GO:0000059 - protein import into nucleus, docking [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAN binding protein 17 protein_id : NP_075635.1

name	Gabrp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122485 CCDS:CCDS24535.1 GeneID:216643 MGI:2387597
definition	GO_component : GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA] codon_start : 1 product : gamma-aminobutyric acid (GABA-A) receptor, pi protein_id : NP_666129.1

name	Kcnip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754025 CCDS:CCDS24537.1 GeneID:70357 MGI:1917607
definition	GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : A-type potassium channel modulatory protein 1.2; potassium channel interacting protein 1 product : Kv channel-interacting protein 1 protein_id : NP_081674.2

name	Kcnmb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981659 CCDS:CCDS24538.1 GeneID:16533 MGI:1334203
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : BK channel beta subunit product : potassium large conductance calcium-activated channel, subfamily M, beta member 1 protein_id : NP_112446.2

name	Lcp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543115 GeneID:16822 MGI:1321402
definition	GO_process : GO:0050663 - cytokine secretion [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0045576 - mast cell activation [Evidence IMP] codon_start : 1 product : lymphocyte cytosolic protein 2 protein_id : NP_034826.2

name	Foxi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229265 CCDS:CCDS24539.1 GeneID:14233 MGI:1096329
definition	GO_component : GO:0005634 - nucleus [Evidence IC]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0043565 - sequence-specific DNA binding [Evidence IDA] [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007605 - sensory perception of sound [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : forkhead homolog 10; HNF-3/forkhead homolog 3 product : forkhead box I1 protein_id : NP_076396.2

name	Dock2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117553625 GeneID:94176 MGI:2149010
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0051020 - GTPase binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0030675 - Rac GTPase activator activity [Evidence IMP] GO_process : GO:0046631 - alpha-beta T cell activation [Evidence IMP]; GO:0046633 - alpha-beta T cell proliferation [Evidence IMP]; GO:0006935 - chemotaxis [Evidence IMP]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IDA]; GO:0001768 - establishment of T cell polarity [Evidence IMP]; GO:0001771 - formation of immunological synapse [Evidence IMP]; GO:0001766 - lipid raft polarization [Evidence IMP]; GO:0045060 - negative thymic T cell selection [Evidence IMP]; GO:0035022 - positive regulation of Rac protein signal transduction [Evidence IC]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0042110 - T cell activation [Evidence IMP]; GO:0042098 - T cell proliferation [Evidence IMP] codon_start : 1 exception : unclassified translation discrepancy product : dedicator of cyto-kinesis 2 protein_id : NP_203538.2

name	EG574403 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701578 GeneID:574403 MGI:3643491
definition	codon_start : 1 product : hypothetical protein LOC574403 protein_id : NP_001020553.1

name	Dock2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117553625 GeneID:94176 MGI:2149010
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0051020 - GTPase binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0030675 - Rac GTPase activator activity [Evidence IMP] GO_process : GO:0046631 - alpha-beta T cell activation [Evidence IMP]; GO:0046633 - alpha-beta T cell proliferation [Evidence IMP]; GO:0006935 - chemotaxis [Evidence IMP]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IDA]; GO:0001768 - establishment of T cell polarity [Evidence IMP]; GO:0001771 - formation of immunological synapse [Evidence IMP]; GO:0001766 - lipid raft polarization [Evidence IMP]; GO:0045060 - negative thymic T cell selection [Evidence IMP]; GO:0035022 - positive regulation of Rac protein signal transduction [Evidence IC]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0042110 - T cell activation [Evidence IMP]; GO:0042098 - T cell proliferation [Evidence IMP] codon_start : 1 exception : unclassified translation discrepancy product : dedicator of cyto-kinesis 2 protein_id : NP_203538.2

name	Ccdc99 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22296587 CCDS:CCDS24541.1 GeneID:70385 MGI:1917635
definition	codon_start : 1 exception : mismatches in translation product : coiled-coil domain containing 99 protein_id : NP_081687.1

name	LOC100038976 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261849 GeneID:100038976
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472098.1

name	LOC666616 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666616
definition	number : 2 pseudo : _no_value

name	LOC666616 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666616
definition	number : 1 pseudo : _no_value

name	LOC666620 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666620
definition	number : 1 pseudo : _no_value

name	LOC666258 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666258
definition	number : 1 pseudo : _no_value

name	LOC666646 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261697 GeneID:666646
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 38 ESTs, 6 Proteins product : similar to single-stranded DNA binding protein 1 pseudo : _no_value transcript_id : XR_034477.1

name	LOC669306 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261699 GeneID:669306
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 48 ESTs, 3 Proteins product : similar to intersex-like pseudo : _no_value transcript_id : XR_034488.1

name	LOC666269 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261698 GeneID:666269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 13 Proteins product : similar to Ac2-008 pseudo : _no_value transcript_id : XR_034484.1

name	D130052B06Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149261596 GeneID:216644 MGI:2685092
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D130052B06 gene transcript_id : XR_035087.1

clone name	MSMg01-335E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508J19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-098D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344I01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-424K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005G20
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-303M18.b	B6Ng01-303M18.g
ACC	GA097510	GA097511
length	1,154	1,138
definition	B6Ng01-303M18.b	B6Ng01-303M18.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(33,659,647 - 33,660,816)	(33,816,276 - 33,817,424)
sequence	gaattcaactgcttctgatacatctccctcctctgcggattgtccttcct cccatcctcacagctcccctggctccccagtcctccagttctcagcccta gctcagcccaccattggtcactgccatgaacacctggccctcagggcctt ttggaagagaccggtctaggggtgtgtgttcagttggactttggagtctt tcaagtatcccctgactcatatatgtttttgaagtaacagctggagacta aggctgactaagttaaattgaaccaggtgtgcatgcaggtcaaaacccca tggcggtgtggtacctgactgtgctttatacaagcttcaggacactttcg atgtggatggtagctaagggttagcacacgtagtcatggcaacagtcatt atgtctgaggagcaagctgtctttgaaccacaactttctgactgtgaagt gttcctgttttagctgtatggctgttccctttcttcagagtggaaagggt taacttccagctttttctccttgaatcagaggctggactgtgatccttcc cagggtgtgctcagcgtgccgtgctctggtctgtgcattttgtggaaacc aaacaggtgcaacgttttaggaaggaggaagagccagcaagaataaagca agtgaggcatacatggggagcctactgtatgcctcaaaccatgctgggca ctcatgagtattcaaggcttcttagctatgtcgttgaagccattatcttc atgctgaagagtcttggatccccgattccataaaatggggagcccctctc aaacactgttacatatctccttattgggcagaaattatactttgactcaa gctctccaaggaccaccttgctttctgtgatgtatcagaggtctagagag gccagtaggctttttacaacctaggcaagcatctaggatccccagccctc ttttgttttatttagtactgggcttgatgaagatgtcccaggtggccttg gagtcactctacagctcagtagactctagctgtcaacctttcctgctcag tctctctgttcctggggactcaaggatggttcacatggccgtcaggggtc aattctctatgcttcaattcctaacgttttgtggaatgtgtgggaagggc aggc	gaattcttgttcaaagaatggacaacccccacccccatgttcctgaaccc tcatctgtggggtggactggaaggggtagccgttctcgttggcaagtctg ggaggtcagtatttgagcttggtgcaccacactgtctcccgggaggaagt acgagatttgcagaaggctctggtaagagggttgcagaaggctcaggctc caacgagtcatgcagcagcgacgacgcctcttacctacgctctgcagact tagagatgagatgttttctccatcagttctgcctgggaagctccaggaga cctaagcaagggactctatgcaggagcagggccagggctcagaggactaa gatctcaggttatcacacagagaacacaggaacaatgcatgttctttcga ggaccatggacatcttgcctgagctggactgcatcccatatccacacaca cacattctaaaacactagggctagggctgtcctcctgctcagtctcgccc ctgccctggccctcatcccccacaggcactcactgatgaagcctagggtg aacctgctttgtggaaagcgagattggtttttttctcgattccagctgca ctgcagaactctgaagtaagcaaaggggcgggggaattgctgcgtttccc ccagctctcccctggcagatatggaggccctgtaaagttatagagcggct gctgtaggcgaaggaaggggaagcagaattctacgacagttcattaatgc aagtgaaagggaagagagctgttatgcacacatgccaggccactcaagac ttattgacaagatgtgacatcaaaagcaggtgaagaatgttgcaatgttg ggctgaggcctcatcttctaaggttagaaaggcctcctgctgggtcacag ggcacacactaggcttatgaccagaactgtagggtccacccctcccactc agtgatctcaatcctcatgggactgggaagctctgaaactcagtgactgc atgcactcagcactgatcagaatctactgggggagcagagagcttcattg catatgcacgagtgtgagccatacagtgtgttcaccactgtgtgtggtgg acaacatatacctggagaagtctagaccaggaacttgc
quality values	Open. Hide. 47 31 33 29 62 32 27 62 62 62 62 62 62 62 62 49 62 47 34 62 51 44 54 62 62 62 62 62 62 62 62 51 56 32 38 50 45 49 26 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 59 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 46 59 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 48 62 62 62 62 38 62 58 58 58 58 58 58 58 58 58 58 49 49 48 58 58 58 58 58 54 58 58 47 49 54 58 58 58 54 54 47 46 46 54 58 58 58 58 58 54 54 58 58 58 58 58 58 58 58 58 58 54 54 58 54 54 58 58 58 54 54 47 58 58 58 58 58 58 58 54 58 58 47 58 58 58 58 58 54 53 58 43 58 39 58 51 58 58 58 51 43 58 58 58 58 42 47 51 58 58 58 50 58 43 51 53 58 58 58 58 54 58 51 58 58 58 50 58 58 58 58 58 58 44 50 58 44 49 51 54 58 58 43 50 58 58 51 58 58 52 58 41 49 58 58 54 58 49 58 58 50 49 46 49 58 58 52 52 38 58 54 58 58 50 54 54 51 49 49 58 53 52 32 49 58 49 41 58 58 25 54 51 54 42 58 37 51 50 40 52 52 50 58 50 51 50 41 49 27 41 37 50 52 51 51 53 53 58 39 58 31 37 53 49 44 40 47 49 54 54 49 49 26 34 33 50 42 37 49 54 42 53 47 50 44 44 52 42 49 37 41 40 50 37 50 54 50 51 54 38 44 40 40 34 51 52 32 47 54 46 32 40 27 26 41 41 19 51 35 54 35 54 36 45 52 44 52 32 53 40 38 45 53 42 42 39 41 51 37 54 37 20 47 46 30 41 39 52 35 43 32 32 36 35 34 47 42 45 34 47 53 33 53 23 40 43 31 27 32 14 23 27 28 40 32 32 25 33 26 43 25 47 30 53 30 47 51 42 30 46 46 51 35 33 26 31 40 40 34 37 42 32 31 24 46 31 30 18 23 30 38 21 29 33 33 24 31 34 37 31 34 25 37 28 45 32 30 30 27 46 31 28 31 31 46 46 31 30 30 31 30 26 31 32 46 38 43 31 21 31 31 18 30 27 28 31 31 30 26 32 20 42 29 40 20 18 29 31 27 18 21 30 30 31 31 46 32 25 26 31 29 32 30 21 31 30 31 31 31 22 10 24 12 16 26 31 31 29 22 41 24 37 23 26 11 19 17 25 32 26 25 21 24 30 36 43 41 22 21 26 19 31 17 18 24 12 6 26 26 17 12 12 19 30 33 31 25 25 9 6 19 31 20 33 25 26 17 11 28 43 25 6 14 29 43 47 25 31 29 43 43 23 22 22 43 28 27 19 32 31 25 31 33 48 33 22 19 16 18 21 19 22 25 30 14 34 17 21 22 14 28 21 18 22 24 13 14 22 12 8 13 15 13 18 16 13 24 10 6 6 12 11 7 13 14 17 24 27 28 14 4 4 3 17 12 22 19 24 24 9 27 7 16 23 28 24 27 28 19 9 18 8 47 10 11 11 7 5 10 4 13 21 10 19 14 15 23 4 8 12 10 4 14 8 10 8 10 26 26 6 22 15 10 12 5 11 10 5 1 3 4 7 25 22 10 16 16 21 8 8 6 16 12 2 3 3 2 4 29 16 12 2 7 7 7 28 7 4 3 3 5 7 15 3 3 2 3 2 3 4 17 18 4 2 2 6 10 6 3 5 2 13 8 2 4 10 8 13 17 4 7 7 4 3 5 20 10 16 16 5 8 8 4 19 7 10 7	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr11_33659647_33660816
seq2: B6Ng01-303M18.b_44_1197

seq1  GAATTCAACTGCTTCTGATACATCTCCCTCCTCTGCGGATTGTCCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGCTTCTGATACATCTCCCTCCTCTGCGGATTGTCCTTCCT  50

seq1  CCCATCCTCACAGCTCCCCTGGCTCCCCAGTCCTCCAGTTCTCAGCCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTCACAGCTCCCCTGGCTCCCCAGTCCTCCAGTTCTCAGCCCTA  100

seq1  GCTCAGCCCACCATTGGTCACTGCCATGAACACCTGGCCCTCAGGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCCACCATTGGTCACTGCCATGAACACCTGGCCCTCAGGGCCTT  150

seq1  TTGGAAGAGACCGGTCTAGGGGTGTGTGTTCAGTTGGACTTTGGAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAGACCGGTCTAGGGGTGTGTGTTCAGTTGGACTTTGGAGTCTT  200

seq1  TCAAGTATCCCCTGACTCATATATGTTTTTGAAGTAACAGCTGGAGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATCCCCTGACTCATATATGTTTTTGAAGTAACAGCTGGAGACTA  250

seq1  AGGCTGACTAAGTTAAATTGAACCAGGTGTGCATGCAGGTCAAAACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACTAAGTTAAATTGAACCAGGTGTGCATGCAGGTCAAAACCCCA  300

seq1  TGGCGGTGTGGTACCTGACTGTGCTTTATACAAGCTTCAGGACACTTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTGTGGTACCTGACTGTGCTTTATACAAGCTTCAGGACACTTTCG  350

seq1  ATGTGGATGGTAGCTAAGGGTTAGCACACGTAGTCATGGCAACAGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATGGTAGCTAAGGGTTAGCACACGTAGTCATGGCAACAGTCATT  400

seq1  ATGTCTGAGGAGCAAGCTGTCTTTGAACCACAACTTTCTGACTGTGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGAGGAGCAAGCTGTCTTTGAACCACAACTTTCTGACTGTGAAGT  450

seq1  GTTCCTGTTTTAGCTGTATGGCTGTTCCCTTTCTTCAGAGTGGAAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTTTTAGCTGTATGGCTGTTCCCTTTCTTCAGAGTGGAAAGGGT  500

seq1  TAACTTCCAGCTTTTTCTCCTTGAATCAGAGGCTGGACTGTGATCCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCCAGCTTTTTCTCCTTGAATCAGAGGCTGGACTGTGATCCTTCC  550

seq1  CAGGGTGTGCTCAGCGTGCCGTGCTCTGGTCTGTGCATTTTGTGGAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGTGCTCAGCGTGCCGTGCTCTGGTCTGTGCATTTTGTGGAAACC  600

seq1  AAACAGGTGCAACGTTTTAGGAAGGAGGAAGAGCCAGCAAGAATAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTGCAACGTTTTAGGAAGGAGGAAGAGCCAGCAAGAATAAAGCA  650

seq1  AGTGAGGCATACATGGGGAGCCTACTGTATGCCTCAAACCATGCTGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGCATACATGGGGAGCCTACTGTATGCCTCAAACCATGCTGGGCA  700

seq1  CTCATGAGTATTCAAGGCTTCTTAGCTATGTCGTTGAAGCCATTATCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGTATTCAAGGCTTCTTAGCTATGTCGTTGAAGCCATTATCTTC  750

seq1  ATGCTGAAGAGTCTTGGATCCCCGATTCCATAAAATGGGGAGCCCCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAGAGTCTTGGATCCCCGATTCCATAAAATGGGGAGCCCCTCTC  800

seq1  AAACACTGTTACATATCTCCTTATTGGGCAGAAATTATACTTTGACTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGTTACATATCTCCTTATTGGGCAGAAATTATACTTTGACTCAA  850

seq1  GCTCTCCAAGGACCACCTTGCTTTCTGTGATGTATCAGAGGTCTAGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCAAGGACCACCTTGCTTTCTGTGATGTATCAGAGGTCTAGAGAG  900

seq1  GCCAGTAGGC-TTTTACAACCTAGGCAAGCATCTA-GATCCCCAGCCCTC  948
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  GCCAGTAGGCTTTTTACAACCTAGGCAAGCATCTAGGATCCCCAGCCCTC  950

seq1  TTTTTGTTTTTATTTTAGTACTGGGCTTGATGAAGATGTCCCAGGTGGCC  998
       |||||||||   |||||||||||||||||||||||||||||||||||||
seq2  -TTTTGTTTT--ATTTAGTACTGGGCTTGATGAAGATGTCCCAGGTGGCC  997

seq1  TTGGAGTCACTCTACAGCTCAGGTAGACTCTAAGCTGTCAACC-TTCCTG  1047
      ||||||||||||||||||||| ||||||||| ||||||||||| ||||||
seq2  TTGGAGTCACTCTACAGCTCA-GTAGACTCT-AGCTGTCAACCTTTCCTG  1045

seq1  CCTCAGTCTCCTCTGTTCCT-GGGACTCCAGGGTTGTTTCACATGCCCGT  1096
       |||||||| |||||||||| |||||| || || || |||||||| ||||
seq2  -CTCAGTCT-CTCTGTTCCTGGGGACT-CAAGGATGGTTCACATGGCCGT  1092

seq1  TCCAGGGGTCATTTCTTCCTATTGCCTTCCATTTCCTCTACGGTTTTTTG  1146
        ||||||||| ||||  ||| |||  | || |||||  |||   |||||
seq2  --CAGGGGTCAATTCT--CTA-TGC--TTCAATTCCT-AACG---TTTTG  1131

seq1  TGGAGATGTGTGGGAAGGGGAGGC  1170
      |||| |||||||||||||| ||||
seq2  TGGA-ATGTGTGGGAAGGGCAGGC  1154

seq1: chr11_33816276_33817424
seq2: B6Ng01-303M18.g_64_1201 (reverse)

seq1  GCAAGTTCCTGGTCTAGAACTCTTCCAGTATATATGTATGCTCA-CACAC  49
      ||||||||||||||||| |||  |||||  ||||||| ||  || |||||
seq2  GCAAGTTCCTGGTCTAG-ACTTCTCCAG-GTATATGT-TGTCCACCACAC  47

seq1  ACAGGTGTGAACACACCTGTAT-GCTCACACTCGTGCATATTGCCATGGA  98
      ||||  ||||||||| |||||| ||||||||||||||||| ||| ||| |
seq2  ACAGTGGTGAACACA-CTGTATGGCTCACACTCGTGCATA-TGCAATGAA  95

seq1  GCTCTCTGCCTCCCCAGTAGATTTCCTGAATCAGTGCTGAGGTGCAATGC  148
      |||||||||  ||||||||||||  ||| ||||||||||| |||| ||||
seq2  GCTCTCTGCTCCCCCAGTAGATT--CTG-ATCAGTGCTGA-GTGC-ATGC  140

seq1  AGTCACCTGAGTTTCCAGAGCTTCCCAGTCCCATGAGGATTGAGAATCAC  198
      ||||| |||||||| ||||||||||||||||||||||||||||| |||||
seq2  AGTCA-CTGAGTTT-CAGAGCTTCCCAGTCCCATGAGGATTGAG-ATCAC  187

seq1  TGAGTGGGAGGGGTGGACCCTACAGTTCTGGTCATAAGCCTAGTGTGTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGTGGGAGGGGTGGACCCTACAGTTCTGGTCATAAGCCTAGTGTGTG-  236

seq1  CCCTGTGACCCAGCAGGAGGCC-TTCTAACCTTAGAAGATGAGGCCTCAG  297
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCTGTGACCCAGCAGGAGGCCTTTCTAACCTTAGAAGATGAGGCCTCAG  286

seq1  CCCAACATTGCAACATTCTTCACCTGCTTTTGATGTCACATCTTGTCAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACATTGCAACATTCTTCACCTGCTTTTGATGTCACATCTTGTCAAT  336

seq1  AAGTCTTGAGTGGCCTGGCATGTGTGCATAACAGCTCTCTTCCCTTTCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGAGTGGCCTGGCATGTGTGCATAACAGCTCTCTTCCCTTTCAC  386

seq1  TTGCATTAATGAACTGTCGTAGAATTCTGCTTCCCCTTCCTTCGCCTACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTAATGAACTGTCGTAGAATTCTGCTTCCCCTTCCTTCGCCTACA  436

seq1  GCAGCCGCTCTATAACTTTACAGGGCCTCCATATCTGCCAGGGGAGAGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCGCTCTATAACTTTACAGGGCCTCCATATCTGCCAGGGGAGAGCT  486

seq1  GGGGGAAACGCAGCAATTCCCCCGCCCCTTTGCTTACTTCAGAGTTCTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAACGCAGCAATTCCCCCGCCCCTTTGCTTACTTCAGAGTTCTGC  536

seq1  AGTGCAGCTGGAATCGAGAAAAAAACCAATCTCGCTTTCCACAAAGCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGCTGGAATCGAGAAAAAAACCAATCTCGCTTTCCACAAAGCAGG  586

seq1  TTCACCCTAGGCTTCATCAGTGAGTGCCTGTGGGGGATGAGGGCCAGGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCTAGGCTTCATCAGTGAGTGCCTGTGGGGGATGAGGGCCAGGGC  636

seq1  AGGGGCGAGACTGAGCAGGAGGACAGCCCTAGCCCTAGTGTTTTAGAATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCGAGACTGAGCAGGAGGACAGCCCTAGCCCTAGTGTTTTAGAATG  686

seq1  TGTGTGTGTGGATATGGGATGCAGTCCAGCTCAGGCAAGATGTCCATGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGGATATGGGATGCAGTCCAGCTCAGGCAAGATGTCCATGGT  736

seq1  CCTCGAAAGAACATGCATTGTTCCTGTGTTCTCTGTGTGATAACCTGAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAAAGAACATGCATTGTTCCTGTGTTCTCTGTGTGATAACCTGAGA  786

seq1  TCTTAGTCCTCTGAGCCCTGGCCCTGCTCCTGCATAGAGTCCCTTGCTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCCTCTGAGCCCTGGCCCTGCTCCTGCATAGAGTCCCTTGCTTA  836

seq1  GGTCTCCTGGAGCTTCCCAGGCAGAACTGATGGAGAAAACATCTCATCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTGGAGCTTCCCAGGCAGAACTGATGGAGAAAACATCTCATCTC  886

seq1  TAAGTCTGCAGAGCGTAGGTAAGAGGCGTCGTCGCTGCTGCATGACTCGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTGCAGAGCGTAGGTAAGAGGCGTCGTCGCTGCTGCATGACTCGT  936

seq1  TGGAGCCTGAGCCTTCTGCAACCCTCTTACCAGAGCCTTCTGCAAATCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCTGAGCCTTCTGCAACCCTCTTACCAGAGCCTTCTGCAAATCTC  986

seq1  GTACTTCCTCCCGGGAGACAGTGTGGTGCACCAAGCTCAAATACTGACCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCCTCCCGGGAGACAGTGTGGTGCACCAAGCTCAAATACTGACCT  1036

seq1  CCCAGACTTGCCAACGAGAACGGCTACCCCTTCCAGTCCACCCCACAGAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTTGCCAACGAGAACGGCTACCCCTTCCAGTCCACCCCACAGAT  1086

seq1  GAGGGTTCAGGAACATGGGGGTGGGGGTTGTCCATTCTTTGAACAAGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCAGGAACATGGGGGTGGGGGTTGTCCATTCTTTGAACAAGAAT  1136

seq1  TC  1149
      ||
seq2  TC  1138

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information