BAC Information

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BAC

Clone NameB6Ng01-304B18
Chromosome11 (Build37)
Map Location 70,130,925 - 70,132,023
singlet/doubletsinglet
Overlap geneAlox12e
Upstream geneCntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12
Downstream geneAlox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304B18.bB6Ng01-304B18.g
ACCGA097745GA097746
length1,107215
definitionB6Ng01-304B18.b B6Ng01-304B18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgggaggatgagaaggcaaaggagctacagagcccaggaatg
atcattagggcttctggaggcccgggcgacacccagggaagtagttcata
gaaccagatgtggactgttaacagatgtgtgggcaacggtgcaaggagga
ccctgtgccttaccctcggtcctgggctccaagcagtccaacctcagtga
cctcgcggcaccagacctgcagctccgggtcctccttcacatcggtgtca
ctcctgtagaaaagctcaaccatcctttccacatacctgttccccagaga
agacagcactcagcctcagaccaggcaagggcttttgagaccggctgccc
cccccccagcgacccccacctctgttgctctcaccgactgatgatctccc
acagcctgagggcatcctgggcatacagagaagatttcacccccacgagt
ccacggtcagccaagtcatccggagggcaaaaggagcggtaggtcaaaca
cgacgtggctctctggagaatgtccacatggcctccgctccccgtgctca
ccacctgaggacaaaccagggtcaagcaagccagataacagagtggggag
atcagggtgtacaggccattcaagtatgaggcgagagaaggacagccctc
ccgtgtagagctgagtttgggagaaaactatgtgaagggaacacctttga
gacacttccaacattgaacctccctcttcacccatcccttttccatacca
ggtcaaaaattccccattcggagacaagattattccgtgccagggtgttg
atctccatggtgtatcgaaagtggggggcaaggagctgattgtgaggaaa
agaaatgagacacagtcaaaccccagaaatgacagggttcatagggcata
gggaatgagacaccctgtgatgagaaagaagggagagagaaatatcttcc
caaagtcctcccaggtcaaggggtcaaggttttactaccttatttggcat
attttgtgtttgctatcgtaattccagccagtcattgaccttcaaaccac
agattccggtgggagccctggctataaggcttcctcctcccaatgtgtgc
ttgacaa
agcccccagcattacgtcagctggctcacaactacttatatctccagctc
caagaaatcagatatcaagcttatctggcaccaaggggaggggaagcctt
tggtcctgtgaaggctcgatgccccagtgtagagaatgctagggcagtga
ggcaggagtgggtgggcgggtgggggagctccctcatagaagtagggtaa
gggggaatggggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70130925_70132023
seq2: B6Ng01-304B18.b_48_1154

seq1  GAATTCTGTGGGAGGATGAGAAGGCAAAGGAGCTACAGAGCCCAGGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGGAGGATGAGAAGGCAAAGGAGCTACAGAGCCCAGGAATG  50

seq1  ATCATTAGGGCTTCTGGAGGCCCGGGCGACACCCAGGGAAGTAGTTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAGGGCTTCTGGAGGCCCGGGCGACACCCAGGGAAGTAGTTCATA  100

seq1  GAACCAGATGTGGACTGTTAACAGATGTGTGGGCAACGGTGCAAGGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGATGTGGACTGTTAACAGATGTGTGGGCAACGGTGCAAGGAGGA  150

seq1  CCCTGTGCCTTACCCTCGGTCCTGGGCTCCAAGCAGTCCAACCTCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCTTACCCTCGGTCCTGGGCTCCAAGCAGTCCAACCTCAGTGA  200

seq1  CCTCGCGGCACCAGACCTGCAGCTCCGGGTCCTCCTTCACATCGGTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCGGCACCAGACCTGCAGCTCCGGGTCCTCCTTCACATCGGTGTCA  250

seq1  CTCCTGTAGAAAAGCTCAACCATCCTTTCCACATACCTGTTCCCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTAGAAAAGCTCAACCATCCTTTCCACATACCTGTTCCCCAGAGA  300

seq1  AGACAGCACTCAGCCTCAGACCAGGCAAGGGCTTTTGAGACCGGCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCACTCAGCCTCAGACCAGGCAAGGGCTTTTGAGACCGGCTGCCC  350

seq1  CCCCCCCAGCGACCCCCACCTCTGTTGCTCTCACCGACTGATGATCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAGCGACCCCCACCTCTGTTGCTCTCACCGACTGATGATCTCCC  400

seq1  ACAGCCTGAGGGCATCCTGGGCATACAGAGAAGATTTCACCCCCACGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGAGGGCATCCTGGGCATACAGAGAAGATTTCACCCCCACGAGT  450

seq1  CCACGGTCAGCCAAGTCATCCGGAGGGCAAAAGGAGCGGTAGGTCAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTCAGCCAAGTCATCCGGAGGGCAAAAGGAGCGGTAGGTCAAACA  500

seq1  CGACGTGGCTCTCTGGAGAATGTCCACATGGCCTCCGCTCCCCGTGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGTGGCTCTCTGGAGAATGTCCACATGGCCTCCGCTCCCCGTGCTCA  550

seq1  CCACCTGAGGACAAACCAGGGTCAAGCAAGCCAGATAACAGAGTGGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGAGGACAAACCAGGGTCAAGCAAGCCAGATAACAGAGTGGGGAG  600

seq1  ATCAGGGTGTACAGGCCATTCAAGTATGAGGCGAGAGAAGGACAGCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGTGTACAGGCCATTCAAGTATGAGGCGAGAGAAGGACAGCCCTC  650

seq1  CCGTGTAGAGCTGAGTTTGGGAGAAAACTATGTGAAGGGAACACCTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTAGAGCTGAGTTTGGGAGAAAACTATGTGAAGGGAACACCTTTGA  700

seq1  GACACTTCCAACATTGAACCTCCCTCTTCACCCATCCCTTTTCCATACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCCAACATTGAACCTCCCTCTTCACCCATCCCTTTTCCATACCA  750

seq1  GGTCAAAAATTCCCCATTCGGAGACAAGATTATTCCGTGCCAGGGTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAAATTCCCCATTCGGAGACAAGATTATTCCGTGCCAGGGTGTTG  800

seq1  ATCTCCATGGTGTATCGAAAGTGGGGGGCAAGGAGCTGATTGTGAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATGGTGTATCGAAAGTGGGGGGCAAGGAGCTGATTGTGAGGAAA  850

seq1  AGAAATGAGACACAGTCAAACCCCAGAAATGACAGGGTCCATAGGGCATA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAAATGAGACACAGTCAAACCCCAGAAATGACAGGGTTCATAGGGCATA  900

seq1  GGGAATGAGACACCCTGTGATGAGAAAGAAGGGAGAGAGAAATATCTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAGACACCCTGTGATGAGAAAGAAGGGAGAGAGAAATATCTTCC  950

seq1  CAAAGTCCTCCAAGGTCAAAGGGTCAGGGTTTTACTA-CTTATTT-GCAT  998
      ||||||||||| ||||||| |||||| |||||||||| ||||||| ||||
seq2  CAAAGTCCTCCCAGGTCAAGGGGTCAAGGTTTTACTACCTTATTTGGCAT  1000

seq1  AATTTTGTGTTTGCTATCGTAATTCCAG-CAGTCATTGACC-TCAAACCA  1046
       ||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  -ATTTTGTGTTTGCTATCGTAATTCCAGCCAGTCATTGACCTTCAAACCA  1049

seq1  CAGAATCCGGTGGGAGCCCTGGCTATAAG-----CTCCTCTCCCATTTG-  1090
      |||| ||||||||||||||||||||||||     |||||| || || || 
seq2  CAGATTCCGGTGGGAGCCCTGGCTATAAGGCTTCCTCCTC-CCAATGTGT  1098

seq1  CCTTGACAA  1099
       ||||||||
seq2  GCTTGACAA  1107