BAC Information

Click to search

BAC

Clone NameB6Ng01-304M06
Chromosome11 (Build37)
Map Location 38,635,584 - 38,774,106
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304M06.bB6Ng01-304M06.g
ACCGA098234GA098235
length1,154642
definitionB6Ng01-304M06.b B6Ng01-304M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,772,870 - 38,774,106)(38,635,584 - 38,636,151)
sequence
gaattcatattgaatctacatggctcaaaggcaagttataaaaagggaag
ttacttaacagaacacctggtgatcatatccataaaggggctatcatgaa
gggtttatgaggtgatcctgaggataattgagaaactcgggatgcttgct
catctctatcatatctggcttatgttatttcttaaccaggctgtcgacct
ttccatccttcttttgttaagccttggtaccaaaaggattatgtatccaa
acaattttagagaacctttttaccaagagaaaagtatgggatttaaattt
attgaatacggctgcatttaacctatttaattggaacacgttaattagat
ctaattgcaaagttattttaattggaaaatcaggcataacactgctattg
gtgtgcttgattaaacagaatgactgaggtcaccagcagattgtgtaaga
tttatgcctgtgattgattaagtatgaaagttaatcaatttaatttatgg
gactgatgttttccttgccttttgaaattgcctgtttctatcttattttt
atcaagacattgtgtgttgaatgtcaactaaactacagtagcacttcaat
ttgtttattttggtgtaatgatgtgtttatttctgatctaagtaatttta
acatcgcttttgtgtcactaattaagatttttaagttactggagataaaa
ttagattttctattaagaaaatttaattttctcagggaaataattcaggc
aacatgggaaacttaacctattagttccattagtgaagttgatggtttat
tgccttaaaacatatgccaggcagcttctggaacaaaggtgtcccttttt
taatcatctcagtgtcaatatgctttatgctttccaatgactatgctgat
aattataataataattagaagatgagggaacattcatgtagtactttata
taggccagacattgttctaatttcattaagtataatactaatttaatacc
ttaattatgtaatgtatttccttcggaaacctcctttttattcaagtcac
agacttacaataaatgtacgtgttggatgaatgcctcctcacacacagtt
gcagaaattgtggtgcctgtcattacaagtaaagaaggcatcagtcaggt
tcca
gaattctctggcctctgcaactctaccatctgtgactatgcatctgccct
caaagtacttcatggctcacttttttttctccctttctcattttactctt
atagtttcctatttactttcctcttcctcttcctcttcctcttcctcttc
ctcttcctcttcctcttcctctttctctttctttctctctctctctctct
ctctctctctctctctctctcttcctcttcctcttcctcttcctcttcct
cttcatcttcatcttcctcttcctctttctctctctctctttctctctct
cttctcattctcttccctttctctttcttctctttctctttctctttctc
ttcttcatctgttcattcattcattcatccattcattcactttacatcct
gtttgcagactccttttcagtcccactcacacaaatccctcatacattgc
tccctccttttctcctcacgggaagggaagttccagtgggtacaaaccca
ccctggcacaccaagttacagcaggactaagtgcatcctttcactgtggc
ttgacagatagtccagatagagatgggatccagtgcagcaaaagttagag
acatcctcactccattgttatgagaccagtgacatctgctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38772870_38774106
seq2: B6Ng01-304M06.b_49_1202 (reverse)

seq1  TGGAACATCCTGACTGATATAGCAAATAGAATCACAGTTGAGGTCAGTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCAACTGAAATACTATCTCAAATGCATATATGCATGTGACCTGACTGA  100
                                          ||  ||||||||||
seq2  ------------------------------------TGGAACCTGACTGA  14

seq1  ATGCTTCTTTACCTTGTAATGACAAGCA-CAC-ATGTCTGCAACTGTGTG  148
         |||||||| |||||||||||| ||| ||| || ||||||||||||||
seq2  TGCCTTCTTTA-CTTGTAATGACAGGCACCACAATTTCTGCAACTGTGTG  63

seq1  ---AGAGGCA-TCATCCAACACGTACATTTATGTTAAGTCTGTGACTTTG  194
          |||||| |||||||||||||||||||||  ||||||||||||||  
seq2  TGAGGAGGCATTCATCCAACACGTACATTTATTGTAAGTCTGTGACTTGA  113

seq1  AT-AAAAGGAGGTTTCCCGAAGGAAATACATTTACATAATTTAAGGTATT  243
      || |||||||||||| |||||||||||||| |||||||| ||||||||||
seq2  ATAAAAAGGAGGTTT-CCGAAGGAAATACA-TTACATAA-TTAAGGTATT  160

seq1  AAATTAGTTATTATACTTAATGAAATTAGAACAATGTCTGGCCTATATTA  293
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  AAATTAG-TATTATACTTAATGAAATTAGAACAATGTCTGGCCTATATAA  209

seq1  AGTACTACATGAATGTT-CCTCATCTTCTAATTATTATTATAATTATCAG  342
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTACTACATGAATGTTCCCTCATCTTCTAATTATTATTATAATTATCAG  259

seq1  CATAGTCATTGGAAAGCATAAAGCATATTGACACTGAGATGATTAAAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCATTGGAAAGCATAAAGCATATTGACACTGAGATGATTAAAAAA  309

seq1  GGGACACCTTTGTTCCAGAAGCTGCCTGGCATATGTTTTAAGGCAATAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACCTTTGTTCCAGAAGCTGCCTGGCATATGTTTTAAGGCAATAAA  359

seq1  CCATCAACTTCACTAATGGAACTAATAGGTTAAGTTTCCCATGTTGCCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAACTTCACTAATGGAACTAATAGGTTAAGTTTCCCATGTTGCCTG  409

seq1  AATTATTTCCCTGAGAAAATTAAATTTTCTTAATAGAAAATCTAATTTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCCCTGAGAAAATTAAATTTTCTTAATAGAAAATCTAATTTTA  459

seq1  TCTCCAGTAACTTAAAAATCTTAATTAGTGACACAAAAGCGATGTTAAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTAACTTAAAAATCTTAATTAGTGACACAAAAGCGATGTTAAAA  509

seq1  TTACTTAGATCAGAAATAAACACATCATTACACCAAAATAAACAAATTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGATCAGAAATAAACACATCATTACACCAAAATAAACAAATTGA  559

seq1  AGTGCTACTGTAGTTTAGTTGACATTCAACACACAATGTCTTGATAAAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTACTGTAGTTTAGTTGACATTCAACACACAATGTCTTGATAAAAA  609

seq1  TAAGATAGAAACAGGCAATTTCAAAAGGCAAGGAAAACATCAGTCCCATA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGAAACAGGCAATTTCAAAAGGCAAGGAAAACATCAGTCCCATA  659

seq1  AATTAAATTGATTAACTTTCATACTTAATCAATCACAGGCATAAATCTTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTGATTAACTTTCATACTTAATCAATCACAGGCATAAATCTTA  709

seq1  CACAATCTGCTGGTGACCTCAGTCATTCTGTTTAATCAAGCACACCAATA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCTGCTGGTGACCTCAGTCATTCTGTTTAATCAAGCACACCAATA  759

seq1  GCAGTGTTATGCCTGATTTTCCAATTAAAATAACTTTGCAATTAGATCTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTATGCCTGATTTTCCAATTAAAATAACTTTGCAATTAGATCTA  809

seq1  ATTAACGTGTTCCAATTAAATAGGTTAAATGCAGCCGTATTCAATAAATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACGTGTTCCAATTAAATAGGTTAAATGCAGCCGTATTCAATAAATT  859

seq1  TAAATCCCATACTTTTCTCTTGGTAAAAAGGTTCTCTAAAATTGTTTGGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCCATACTTTTCTCTTGGTAAAAAGGTTCTCTAAAATTGTTTGGA  909

seq1  TACATAATCCTTTTGGTACCAAGGCTTAACAAAAGAAGGATGGAAAGGTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATCCTTTTGGTACCAAGGCTTAACAAAAGAAGGATGGAAAGGTC  959

seq1  GACAGCCTGGTTAAGAAATAACATAAGCCAGATATGATAGAGATGAGCAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTGGTTAAGAAATAACATAAGCCAGATATGATAGAGATGAGCAA  1009

seq1  GCATCCCGAGTTTCTCAATTATCCTCAGGATCACCTCATAAACCCTTCAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCGAGTTTCTCAATTATCCTCAGGATCACCTCATAAACCCTTCAT  1059

seq1  GATAGCCCCTTTATGGATATGATCACCAGGTGTTCTGTTAAGTAACTTCC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCCCTTTATGGATATGATCACCAGGTGTTCTGTTAAGTAACTTCC  1109

seq1  CTTTTTATAACTTGCCTTTGAGCCATGTAGATTCAATATGAATTC  1237
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATAACTTGCCTTTGAGCCATGTAGATTCAATATGAATTC  1154

seq1: chr11_38635584_38636151
seq2: B6Ng01-304M06.g_66_628

seq1  GAATTCTCTGGCCTCTGCAACTCTACCATCTGTGACTATGCATCTGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCCTCTGCAACTCTACCATCTGTGACTATGCATCTGCCCT  50

seq1  CAAAGTACTTCATGGCTCACTTTTTTTTCTCCCTTTCTCATTTTACTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACTTCATGGCTCACTTTTTTTTCTCCCTTTCTCATTTTACTCTT  100

seq1  ATAGTTTCCTATTTACTTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCCTATTTACTTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTC  150

seq1  CTCTTCCTCTTCCTCTTCCTCTTTCTCTTTCTTTCTCTCTCTCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCTTCCTCTTCCTCTTTCTCTTTCTTTCTCTCTCTCTCTCTCT  200

seq1  CTCTCTCTCTCTCTCTCTCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCT  250

seq1  CTTCATCTTCATCTTCCTCTTCCTCTTTCTCTCTCTCTCTTTCTCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTTCATCTTCCTCTTCCTCTTTCTCTCTCTCTCTTTCTCTCTCT  300

seq1  CTTCTCATTCTCTTCCCTTTCTCTTTCTTCTCTTTCTCTTTCTCTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATTCTCTTCCCTTTCTCTTTCTTCTCTTTCTCTTTCTCTTTCTC  350

seq1  TTCTTCATCTGTTCATTCATTCATTCATCCATTCATTCACTTTACATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATCTGTTCATTCATTCATTCATCCATTCATTCACTTTACATCCT  400

seq1  GTTTGCAGACTCCTTTTCAGTCCCACTCACACAAATCCCTCATACATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGACTCCTTTTCAGTCCCACTCACACAAATCCCTCATACATTGC  450

seq1  TCCCTCCTTTTCTCCTCACGGGAAGGGAAGTTCCCAGTGGGTACAAACCC  500
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCCTCCTTTTCTCCTCACGGGAAGGGAAGTT-CCAGTGGGTACAAACCC  499

seq1  ACCCTGGCACACCAAGTTACAGCAGGACTAAGTGCATCCTTTTCAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  ACCCTGGCACACCAAGTTACAGCAGGACTAAGTGCATCCTTT--CACTGT  547

seq1  GGCCTTGACAAGATAGTC  568
      || |||||| ||||||||
seq2  GG-CTTGAC-AGATAGTC  563