BAC Information

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BAC

Clone NameB6Ng01-304N07
Chromosome11 (Build37)
Map Location 59,453,198 - 59,626,935
singlet/doubletdoublet
Overlap geneAA536749, 4933433K01Rik, Flcn
Upstream geneTrim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225
Downstream geneCops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304N07.bB6Ng01-304N07.g
ACCGA098275GA098276
length1,135771
definitionB6Ng01-304N07.b B6Ng01-304N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,453,198 - 59,454,337)(59,626,165 - 59,626,935)
sequence
gaattccaaggcatccagtgctgctacacacctccaaaggatagcaggct
tcccaccccacaccagcctgtgcccctcaagctgccctacccactgcctc
tatgccacacttacctaattgactgtctcggaagagggctccttgaagca
gatgttgagacgaagatgctggcactgagcccctcctttgagtgacacga
tcctaggaagcaccagtagcgagagacagtggagggaggaggaagcttac
tttttctgtgcattggtgagagggtctggatctggccagaaaatctgaat
gagctcaaggggacagacaaccaggaaggacagcctggaccccagccagg
gtgtctaccagatgtgcagctttgggcatgtcacagtgaacttgctgatg
gagagaatgagctagaaggtcaacggcaggcaaaggatccaggccagttt
tctctctgagcccagctgggtatctggcacacagagagcttagcaaatat
ttgtggttcccagtgttactctctcattattgataacagctgtcaattat
tgaagactccctgtgctctggactccgtgctaagtgctggatgtcctgcc
cttcatcgccacagtcccctcacacctgccatctgcacttacacctgtca
tctgtactcacacctgccatctgcactcacacctgccatctgcactcaca
cctgccatctgcactcacaccagccattcccactcacacctgccattccc
actcacacctgccatctgcacttacacctgccattcccacttcacacctg
ccgtctgcacttaacacctgccatctgcactcacacctgccatgtgcact
cacacctgccattcccactcacacctgccatctgcactcacacctgccat
tcccactcacaccttgccattcccactcacaccagccattcccacttcac
accctgccattctgcacttcacacctgttcatctgcacttcacaccagcc
attcccacttcacacctgcatctgcacttccaccttgcaatcttgcaatt
cacacctgacatgtggcactcacacttgccatttcccacctccactgcaa
ttctgcactccacacctgcaatttccactcacacc
gaattccaggcctgcctgaactcctgactttcctgccttcctcagcctct
aattgctgggattgtgggcatgttttaccaccccaggagtgatgtggtac
taatggatacaacctaaggcgttttgcatcctaaccaagcattctcccag
ctaagccacatatccagcccctggttggcgtttgttttgtttactttgtg
agacaatgtttcccatccaagtactgaccaggcctgactgcttagctccc
gagatgagatgagaccagggcgtgttctggatggtatggccatagactaa
gacagtgtctcgtgttacccaggctaggctcagatttcacccctgctcct
cctgcctccatgtgcccatccatactgatggcaaaagtagcattaaggca
gagcgtgaagctttaatctcggtacccaggaggcagaagtaaggggattt
ctaagggtttgaggccagcctggtctacatagtgcgaccctgtttcaaaa
acaaaactgtaaaactagaattccaaatctcttgaatttgcccacaaatt
atttgtaacaatctctgaaaacaattaagcctagttcagtcattaggggt
aggtgcattccctcaacagaaagcttttcacactttaatgataactggca
aaggagaaatgtagaggtagttggttcacaactctggctcctggcaggtt
gcacttgactcctgcccaggatctttttggatttttgtcttcacacacgc
gtatgctcgtgtgtgtgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59453198_59454337
seq2: B6Ng01-304N07.b_46_1180

seq1  GAATTCCAAGGCATCCAGTGCTGCTACACACCTCCAAAGGATAGCAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGCATCCAGTGCTGCTACACACCTCCAAAGGATAGCAGGCT  50

seq1  TCCCACCCCACACCAGCCTGTGCCCCTCAAGCTGCCCTACCCACTGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCCACACCAGCCTGTGCCCCTCAAGCTGCCCTACCCACTGCCTC  100

seq1  TATGCCACACTTACCTAATTGACTGTCTCGGAAGAGGGCTCCTTGAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACACTTACCTAATTGACTGTCTCGGAAGAGGGCTCCTTGAAGCA  150

seq1  GATGTTGAGACGAAGATGCTGGCACTGAGCCCCTCCTTTGAGTGACACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGAGACGAAGATGCTGGCACTGAGCCCCTCCTTTGAGTGACACGA  200

seq1  TCCTAGGAAGCACCAGTAGCGAGAGACAGTGGAGGGAGGAGGAAGCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGAAGCACCAGTAGCGAGAGACAGTGGAGGGAGGAGGAAGCTTAC  250

seq1  TTTTTCTGTGCATTGGTGAGAGGGTCTGGATCTGGCCAGAAAATCTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTGCATTGGTGAGAGGGTCTGGATCTGGCCAGAAAATCTGAAT  300

seq1  GAGCTCAAGGGGACAGACAACCAGGAAGGACAGCCTGGACCCCAGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAAGGGGACAGACAACCAGGAAGGACAGCCTGGACCCCAGCCAGG  350

seq1  GTGTCTACCAGATGTGCAGCTTTGGGCATGTCACAGTGAACTTGCTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTACCAGATGTGCAGCTTTGGGCATGTCACAGTGAACTTGCTGATG  400

seq1  GAGAGAATGAGCTAGAAGGTCAACGGCAGGCAAAGGATCCAGGCCAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATGAGCTAGAAGGTCAACGGCAGGCAAAGGATCCAGGCCAGTTT  450

seq1  TCTCTCTGAGCCCAGCTGGGTATCTGGCACACAGAGAGCTTAGCAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGAGCCCAGCTGGGTATCTGGCACACAGAGAGCTTAGCAAATAT  500

seq1  TTGTGGTTCCCAGTGTTACTCTCTCATTATTGATAACAGCTGTCAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTCCCAGTGTTACTCTCTCATTATTGATAACAGCTGTCAATTAT  550

seq1  TGAAGACTCCCTGTGCTCTGGACTCCGTGCTAAGTGCTGGATGTCCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTCCCTGTGCTCTGGACTCCGTGCTAAGTGCTGGATGTCCTGCC  600

seq1  CTTCATCGCCACAGTCCCCTCACACCTGCCATCTGCACTTACACCTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCGCCACAGTCCCCTCACACCTGCCATCTGCACTTACACCTGTCA  650

seq1  TCTGTACTCACACCTGCCATCTGCACTCACACCTGCCATCTGCACTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTCACACCTGCCATCTGCACTCACACCTGCCATCTGCACTCACA  700

seq1  CCTGCCATCTGCACTCACACCAGCCATTCCCACTCACACCTGCCATTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATCTGCACTCACACCAGCCATTCCCACTCACACCTGCCATTCCC  750

seq1  ACTCACACCTGCCATCTGCACTTACACCTGCCATTCCCAC-TCACACCTG  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTCACACCTGCCATCTGCACTTACACCTGCCATTCCCACTTCACACCTG  800

seq1  CCGTCTGCACTTAACACCTGCCATCTGCACTCACACCTGCCATGTGCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTGCACTTAACACCTGCCATCTGCACTCACACCTGCCATGTGCACT  850

seq1  CACACCTGCCATTCCCACTCACACCTGCCATCTGCACTCACACCTGCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGCCATTCCCACTCACACCTGCCATCTGCACTCACACCTGCCAT  900

seq1  TCCCACTCACACC-TGCCATTCCCACTCACACCAGCCATTCCCAC-TCAC  947
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TCCCACTCACACCTTGCCATTCCCACTCACACCAGCCATTCCCACTTCAC  950

seq1  A-CCTGCCA-TCTGCAC-TCACACCTG-TCATCTGCAC-TCACACCAGCC  992
      | ||||||| ||||||| ||||||||| |||||||||| |||||||||||
seq2  ACCCTGCCATTCTGCACTTCACACCTGTTCATCTGCACTTCACACCAGCC  1000

seq1  ATTCCCAC-TCACACCTGCCATCTGCACTCACACC-TGCCATC-TGC-AC  1038
      |||||||| ||||||||| ||||||||||  |||| ||| ||| ||| | 
seq2  ATTCCCACTTCACACCTG-CATCTGCACTTCCACCTTGCAATCTTGCAAT  1049

seq1  TCACACCTGCCATGT-GCACTCACACCTGCCA-TTCCCACTCACACCTGC  1086
      ||||||||| ||||| |||||||||| ||||| ||||||| | |  ||||
seq2  TCACACCTGACATGTGGCACTCACACTTGCCATTTCCCAC-CTCCACTGC  1098

seq1  CA-TCTGCACT-CACACCTGCCATTCCCACTCACACCTGCCATTCCCACT  1134
       | |||||||| ||||||||| ||| |||||||||||             
seq2  AATTCTGCACTCCACACCTGCAATTTCCACTCACACC-------------  1135

seq1  CACACC  1140
            
seq2  ------  1135

seq1: chr11_59626165_59626935
seq2: B6Ng01-304N07.g_67_837 (reverse)

seq1  GACACACACACGCGAGCATACACCTGTGTGATG-CCCAAATCCAGATAGC  49
      ||||||||||| ||||||||| | ||||||| | |  ||||||| | || 
seq2  GACACACACACACGAGCATACGCGTGTGTGAAGACAAAAATCCAAAAAGA  50

seq1  TCCTGGGCAGGTGCTCAAGTGCAACCCGCCAGGAGCCAGAGTGGTGAGCC  99
      ||||||||||| | |||||||||||| ||||||||||||||| |||| ||
seq2  TCCTGGGCAGGAG-TCAAGTGCAACCTGCCAGGAGCCAGAGTTGTGAACC  99

seq1  AACTACCTCTACACTGCTCCTTTGCCAGTTATCATAAAAGTGTTGAAAAG  149
      ||||||||||||| | ||||||||||||||||||| |||||| |||||||
seq2  AACTACCTCTACATTTCTCCTTTGCCAGTTATCATTAAAGTG-TGAAAAG  148

seq1  CTTTCTGTTGAGGGAATGCACCTACCCCTAATGACTGAACTAGGCTTACT  199
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTTCTGTTGAGGGAATGCACCTACCCCTAATGACTGAACTAGGCTTAAT  198

seq1  TG-TTTAAGAGATTGTTACAAATAATTTGTGGGCAAATTCAAGAGATTTG  248
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGAGATTGTTACAAATAATTTGTGGGCAAATTCAAGAGATTTG  248

seq1  GAATTCTAGTTTTACAGTTTTGTTTTTGAAACAGGGTCTCACTCTGTAGA  298
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  GAATTCTAGTTTTACAGTTTTGTTTTTGAAACAGGGTCGCACTATGTAGA  298

seq1  CCAGGCTGGCCTCAAACCCTTAGAAATCCCCTTACTTCTGCCTCCTGGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCAAACCCTTAGAAATCCCCTTACTTCTGCCTCCTGGGT  348

seq1  ACCGAGATTAAAGCTTCACGCTCTGCCTTAATGCTACTTTTGCCATCAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGATTAAAGCTTCACGCTCTGCCTTAATGCTACTTTTGCCATCAGT  398

seq1  ATGGATGGGCACATGGAGGCAGGAGGAGCAGGGGTGAAATCTGAGCCTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGGGCACATGGAGGCAGGAGGAGCAGGGGTGAAATCTGAGCCTAG  448

seq1  CCTGGGTAACACGAGACACTGTCTTAGTCTATGGCCATACCATCCAGAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTAACACGAGACACTGTCTTAGTCTATGGCCATACCATCCAGAAC  498

seq1  ACGCCCTGGTCTCATCTCATCTCGGGAGCTAAGCAGTCAGGCCTGGTCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTGGTCTCATCTCATCTCGGGAGCTAAGCAGTCAGGCCTGGTCAG  548

seq1  TACTTGGATGGGAAACATTGTCTCACAAAGTAAACAAAACAAACGCCAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGATGGGAAACATTGTCTCACAAAGTAAACAAAACAAACGCCAAC  598

seq1  CAGGGGCTGGATATGTGGCTTAGCTGGGAGAATGCTTGGTTAGGATGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTGGATATGTGGCTTAGCTGGGAGAATGCTTGGTTAGGATGCAA  648

seq1  AACGCCTTAGGTTGTATCCATTAGTACCACATCACTCCTGGGGTGGTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCTTAGGTTGTATCCATTAGTACCACATCACTCCTGGGGTGGTAAA  698

seq1  ACATGCCCACAATCCCAGCAATTAGAGGCTGAGGAAGGCAGGAAAGTCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCCACAATCCCAGCAATTAGAGGCTGAGGAAGGCAGGAAAGTCAG  748

seq1  GAGTTCAGGCAGGCCTGGAATTC  771
      |||||||||||||||||||||||
seq2  GAGTTCAGGCAGGCCTGGAATTC  771