BAC Information

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BAC

Clone NameB6Ng01-305J21
Chromosome11 (Build37)
Map Location 36,442,197 - 36,561,198
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneSlit3, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305J21.bB6Ng01-305J21.g
ACCGA098864GA098865
length1,1771,070
definitionB6Ng01-305J21.b B6Ng01-305J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,560,006 - 36,561,198)(36,442,197 - 36,443,276)
sequence
gaattcttaatttctcattacagaatataaatgatttttatatattcata
aatagtaccaaatgtgttatagtgtttgaagatatttctggacacaagtt
tctgggatgaaaaattatccaacatcttaaactcactgtttaaacacacc
taatattttttaattagtttaaaaattaatttttaaaaaacagattagtt
tattagtaacttataaatctttcttcacatatttaactatcagaattaag
caactttctactataacatatcagttaattattgttccatattgttagag
taaaaaaaccaaaagctgtcaggagaatattttgtaattgaagtagattc
gcatatattatctcaaagtgcaagcatgcacctattagtaatcctcatgc
tatttgtaatcttgctaaatatctcttgatttcagacaaatagaatagca
actctctgtcagaaaatcaaaagaatttttcaccagaaccaacgtaagca
acattactcacaaatgattttagttgtttaatttgtcagcgtaagcagct
cagtaggtgtgggctgtggatccaaactctgcatcactccccatgacaac
aaggtttgtcagtcttgactggggttttaatactgtcatggtgtaattat
tgaataaaatgttaaagttgcaatgtcatctagcaaagatacctgtacta
tatacagcacagcatgcatcacttacagaaattctcaacctctctaaaat
ataggacatacactaaggcaggaccgtgaaacgcctgtcagaactgtaga
cccacagttcagaatgaatgtagtcatcccatctctggcttggcccaagt
gacattgtgcaaatggtggcattagtgtcatcagcaataatggcttcccc
ttcaattctgtcaacggtatcacgttgctttgccagaactttcgttgcaa
agctcacggaaagctagtggaaaaccaaacaatcagcagttgctgtagct
gatgtctaaagagtttatgggtatacactacgcaagtgtgatgcgagaat
ccacgtgatgtttcgtttaaatgaatccataagaagaatatcctctgtta
gacctttcctttgctcctcagctataaaatagaacctgtcacttccgttg
actctgcagttaataataggctgtgag

gaattctcaggtttgccagtgtacttaacttttaacgtttttaaattttc
taaattatgtgtatgtaggagggattagtacacatgagcataggtgccca
cggtggccagagacttgtagccctcatggagttggaatctggaagccatg
ttgttttcagtagtattttgggtagatagaactggggtcctatgcaagaa
ctgtagatgctctaaatcactgagaaatctttcagcaccccttttttttc
actttttgataatgccaaataaatgaaataaaaaaatagaaacataataa
atgcccatttatttcacgggtttttctactattaatacagataaattgtt
aagtattaaaaacaaaaaaatgttttataatctgttaagatctagtctag
cactcttgcagaggacctggttttccttcacagcacaaagcccataaacc
cttttccagggcatctgatgtccttgcctggcctgcatagctacctgcac
ataaattatgcatacacatacaaacaggcacacacaaacacatgcaaaaa
tgaaaataaatgcaactatttttattattacctttgagttttttacagtt
caatcattgcccccccccaccctccagtgtaccctcccatagttcatcat
cccattcctcctctctcttgtctccaagacgatgccccacccaccctgct
cctgccaggcctcaagtctctctagggttaggtgtatcttcttccagtgt
agccagaccaggaagtcctctgctgtatatgtgtagggggcctcagacca
gctcatgtatgctgcctggttggtggcttagtgtctgagagctctcaggg
gtctgggtgagttgggactgctagtcttcttatggggttgctctcttcct
cagcttctttcagtcttttcaaccacagtgggtccccaacttcagtccaa
tggctaggttggactgccaacttggatcatctagggaggctcaagactga
cacttatactgatgctatggtgtgctacagacaggaacatggcctgtcta
tgagagacctcataaacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36560006_36561198
seq2: B6Ng01-305J21.b_46_1222 (reverse)

seq1  CTCACAGGCTATTATTTAACTGCCAGAGTCCCATAGTGGAGTGACAAGTT  50
      ||||||| |||||| ||||||| |||||||    |  | ||||||| |||
seq2  CTCACAGCCTATTA-TTAACTG-CAGAGTC---AACGGAAGTGACAGGTT  45

seq1  CTAATTTTATAGCTGAAGGACAAAG--AAAGTCT-ACAGAGGAATAATCT  97
      || ||||||||||||| |  |||||  || |||| ||||||| ||| |||
seq2  CT-ATTTTATAGCTGAGGAGCAAAGGAAAGGTCTAACAGAGG-ATATTCT  93

seq1  --CTATGGATTTCATTTTAAAACGAAACATCCACGTGGATTCTCGCATCA  145
         |||||| |||||||  ||||||||||| |||||||||||||||||||
seq2  TCTTATGGA-TTCATTT--AAACGAAACAT-CACGTGGATTCTCGCATCA  139

seq1  CACTTGCGGTAGTTGTTATTACCCATAAACCTCTTTAGACATCCAGCTAC  195
      ||||||| |||| |||   |||||||||| |||||||||||| |||||||
seq2  CACTTGC-GTAG-TGT--ATACCCATAAA-CTCTTTAGACAT-CAGCTAC  183

seq1  AGCAACCTGCTGATTGTTTTGGTTTTCCACTAGCTTTCCGTGAGCTTTGC  245
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCAA-CTGCTGATTG-TTTGGTTTTCCACTAGCTTTCCGTGAGCTTTGC  231

seq1  AACGAAAGTTCTGGCAAAGCAACGTGATACCGTTTGACAGAATTGAAGGG  295
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACGAAAGTTCTGGCAAAGCAACGTGATACCG-TTGACAGAATTGAAGGG  280

seq1  GAAGCCATTATTGCTGATGACACTAATGCCACCATTTGCACAATGTCACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATTATTGCTGATGACACTAATGCCACCATTTGCACAATGTCACT  330

seq1  TGGGCCAAGCCAGAGATGGGATGACTACATTCATTCTGAACTGTGGGTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAAGCCAGAGATGGGATGACTACATTCATTCTGAACTGTGGGTCT  380

seq1  ACAGTTCCTGACAGGCGTTTCACGGTCCTGCCTTAGTGTATGTCCTATAT  445
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTT-CTGACAGGCGTTTCACGGTCCTGCCTTAGTGTATGTCCTATAT  429

seq1  TTTAGAGAGGTTGAGAATTTCTGTAAGTGATGCATGCTGTGCTGTATATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAGGTTGAGAATTTCTGTAAGTGATGCATGCTGTGCTGTATATA  479

seq1  GTACAGGTATCTTTGCTAGATGACATTGCAACTTTAACATTTTATTCAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGTATCTTTGCTAGATGACATTGCAACTTTAACATTTTATTCAAT  529

seq1  AATTACACCATGACAGTATTAAAACCCCAGTCAAGACTGACAAACCTTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACCATGACAGTATTAAAACCCCAGTCAAGACTGACAAACCTTGT  579

seq1  TGTCATGGGGAGTGATGCAGAGTTTGGATCCACAGCCCACACCTACTGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGGGAGTGATGCAGAGTTTGGATCCACAGCCCACACCTACTGAG  629

seq1  CTGCTTACGCTGACAAATTAAACAACTAAAATCATTTGTGAGTAATGTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACGCTGACAAATTAAACAACTAAAATCATTTGTGAGTAATGTTG  679

seq1  CTTACGTTGGTTCTGGTGAAAAATTCTTTTGATTTTCTGACAGAGAGTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTTGGTTCTGGTGAAAAATTCTTTTGATTTTCTGACAGAGAGTTG  729

seq1  CTATTCTATTTGTCTGAAATCAAGAGATATTTAGCAAGATTACAAATAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTATTTGTCTGAAATCAAGAGATATTTAGCAAGATTACAAATAGC  779

seq1  ATGAGGATTACTAATAGGTGCATGCTTGCACTTTGAGATAATATATGCGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGATTACTAATAGGTGCATGCTTGCACTTTGAGATAATATATGCGA  829

seq1  ATCTACTTCAATTACAAAATATTCTCCTGACAGCTTTTGGTTTTTTTACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTCAATTACAAAATATTCTCCTGACAGCTTTTGGTTTTTTTACT  879

seq1  CTAACAATATGGAACAATAATTAACTGATATGTTATAGTAGAAAGTTGCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATATGGAACAATAATTAACTGATATGTTATAGTAGAAAGTTGCT  929

seq1  TAATTCTGATAGTTAAATATGTGAAGAAAGATTTATAAGTTACTAATAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGATAGTTAAATATGTGAAGAAAGATTTATAAGTTACTAATAAA  979

seq1  CTAATCTGTTTTTTAAAAATTAATTTTTAAACTAATTAAAAAATATTAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTGTTTTTTAAAAATTAATTTTTAAACTAATTAAAAAATATTAGG  1029

seq1  TGTGTTTAAACAGTGAGTTTAAGATGTTGGATAATTTTTCATCCCAGAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAAACAGTGAGTTTAAGATGTTGGATAATTTTTCATCCCAGAAA  1079

seq1  CTTGTGTCCAGAAATATCTTCAAACACTATAACACATTTGGTACTATTTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTCCAGAAATATCTTCAAACACTATAACACATTTGGTACTATTTA  1129

seq1  TGAATATATAAAAATCATTTATATTCTGTAATGAGAAATTAAGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATAAAAATCATTTATATTCTGTAATGAGAAATTAAGAATTC  1177


seq1: chr11_36442197_36443276
seq2: B6Ng01-305J21.g_65_1134

seq1  GAATTCTCAGGTTTGCCAGTGTACTTAACTTTTAACGTTTTTAAATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTTTGCCAGTGTACTTAACTTTTAACGTTTTTAAATTTTC  50

seq1  TAAATTATGTGTATGTAGGAGGGATTAGTACACATGAGCATAGGTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATGTGTATGTAGGAGGGATTAGTACACATGAGCATAGGTGCCCA  100

seq1  CGGTGGCCAGAGACTTGTAGCCCTCATGGAGTTGGAATCTGGAAGCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGCCAGAGACTTGTAGCCCTCATGGAGTTGGAATCTGGAAGCCATG  150

seq1  TTGTTTTCAGTAGTATTTTGGGTAGATAGAACTGGGGTCCTATGCAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAGTAGTATTTTGGGTAGATAGAACTGGGGTCCTATGCAAGAA  200

seq1  CTGTAGATGCTCTAAATCACTGAGAAATCTTTCAGCACCCCTTTTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATGCTCTAAATCACTGAGAAATCTTTCAGCACCCCTTTTTTTTC  250

seq1  ACTTTTTGATAATGCCAAATAAATGAAATAAAAAAATAGAAACATAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGATAATGCCAAATAAATGAAATAAAAAAATAGAAACATAATAA  300

seq1  ATGCCCATTTATTTCACGGGTTTTTCTACTATTAATACAGATAAATTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATTTATTTCACGGGTTTTTCTACTATTAATACAGATAAATTGTT  350

seq1  AAGTATTAAAAACAAAAAAATGTTTTATAATCTGTTAAGATCTAGTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAAAAACAAAAAAATGTTTTATAATCTGTTAAGATCTAGTCTAG  400

seq1  CACTCTTGCAGAGGACCTGGTTTTCCTTCACAGCACAAAGCCCATAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGCAGAGGACCTGGTTTTCCTTCACAGCACAAAGCCCATAAACC  450

seq1  CTTTTCCAGGGCATCTGATGTCCTTGCCTGGCCTGCATAGCTACCTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAGGGCATCTGATGTCCTTGCCTGGCCTGCATAGCTACCTGCAC  500

seq1  ATAAATTATGCATACACATACAAACAGGCACACACAAACACATGCAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATGCATACACATACAAACAGGCACACACAAACACATGCAAAAA  550

seq1  TGAAAATAAATGCAACTATTTTTATTATTACCTTTGAGTTTTTTACAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAATGCAACTATTTTTATTATTACCTTTGAGTTTTTTACAGTT  600

seq1  CAATCATTGCCCCCCCCCACCCTCCAGTGTACCCTCCCATAGTTCATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTGCCCCCCCCCACCCTCCAGTGTACCCTCCCATAGTTCATCAT  650

seq1  CCCATTCCTCCTCTCTCTTGTCTCCAAGACGATGCCCCACCCACCCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCTCCTCTCTCTTGTCTCCAAGACGATGCCCCACCCACCCTGCT  700

seq1  CCTGCCAGGCCTCAAGTCTCTCTAGGGTTAGGTGTATCTTCTTCCAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGGCCTCAAGTCTCTCTAGGGTTAGGTGTATCTTCTTCCAGTGT  750

seq1  AGCCAGACCAGGAAGTCCTCTGCTGTATATGTGTAGGGGGCCTCAGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACCAGGAAGTCCTCTGCTGTATATGTGTAGGGGGCCTCAGACCA  800

seq1  GCTCATGTATGCTGCCTGGTTGGTGGCTTAGTGTCTGAGAGCTCTCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTATGCTGCCTGGTTGGTGGCTTAGTGTCTGAGAGCTCTCAGGG  850

seq1  GTCTGGGTGAGTTGGGACTGCTAGTCTTCTTATGGGGTTGCCCTCTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTCTGGGTGAGTTGGGACTGCTAGTCTTCTTATGGGGTTGCTCTCTTCCT  900

seq1  CAGCTTCTTTCAGTCTTTTCAACCACAGT-GGTCCCCAACTTCAGTCCAA  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGCTTCTTTCAGTCTTTTCAACCACAGTGGGTCCCCAACTTCAGTCCAA  950

seq1  TGGCTAGGTTGGACCTGCCCAACTTGGGATTCATCTTAAGGGGAGGCTCC  999
      ||||||||||||| ||| |||||||||   ||||||    |||||||| |
seq2  TGGCTAGGTTGGA-CTG-CCAACTTGG--ATCATCT---AGGGAGGCT-C  992

seq1  AAGACCTGACACTATTACTGATGCTATGGTGTGCTTACAGACAGGAACAT  1049
      |||| ||||||||  ||||||||||||||||||| |||||||||||||||
seq2  AAGA-CTGACACTTATACTGATGCTATGGTGTGC-TACAGACAGGAACAT  1040

seq1  GG-CTGTCCTATGAGAGACTCAATAAAACACT  1080
      || |||| |||||||||||   || |||||||
seq2  GGCCTGT-CTATGAGAGACCTCAT-AAACACT  1070


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