BAC Information

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BAC

Clone NameB6Ng01-305M06
Chromosome11 (Build37)
Map Location 106,064,824 - 106,177,226
singlet/doubletdoublet
Overlap gene2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b
Upstream geneTlk2, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik
Downstream geneScn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305M06.bB6Ng01-305M06.g
ACCGA098971GA098972
length1,1581,050
definitionB6Ng01-305M06.b B6Ng01-305M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,064,824 - 106,065,958)(106,176,176 - 106,177,226)
sequence
gaattcaatgctttgactttatacatactcttgcataatctttggaccag
agaactggtctgaaaaatgaacagattcaatcttatcagcatagtgtgta
agaaaatgaaccatctgaaaaaaaaaacaaaacagaaagaatattaacta
gtttagtgcactcccaagctttcatagatattcactttttaatccatact
tttataaaatgtcattcagattaaaatatttcttttaaaaaaattacctc
accttcaatttaaagagatggttctcttagtcccagcactggggagtcat
gagatcaaggccagcctggactacaaaagcaagttccagcacagccaggg
ctattctctgcagtcaccctccagccttagtccctcccatgacaggatca
caagtgcccaccctgtgtgcccacctttacttatacaaactgaaactcaa
gactagactgaagtcttaaacaaacaagcaaacctgaatgttgccttgga
gtggcggtgcacatctttatttgtagcatttggggggatagaggcaggtg
gacctctatgagccagggttacatagtaagactcaaaaattaaaacaaaa
accttgaaagtcaatgggtcttttagagaactttttattttacttgtgca
tgtcaatgtgtgtgcatgtgtgctgtgtacctggggaaggcaggagagtc
acatccctcatagctggagctgtgggacacttagcttgtcaggaaggtgc
taggacaagagctacagtcctttctttttttttttttccctgagacaggg
ttttctctgtgtagccctggctgtcctggaactcactctgtaaaccaggc
tggccttgaactcagaaatcccgcctacctctgccctcccgagtgttggg
attaaaggtgtggtgccaccactgcccctgcctgcaagcctaccgtccct
aacaaatgctcggtgctcttaaccgcatgcttgtctgtctccttgaactg
acagccctctgctgagcctatcagcaaggagcaagcagtgcacactcgga
aactatgaacggctcaaaagtagaactctgtccaactgtgaagaaaaatc
tacacgctccacatgtagagaacttagccaatgcctcactatagaacgtg
cagaaaat
gaattctctggaaaaggcccttcaaccatgatggttaagtggtgggtttt
ccctaagtggtttctacttaagtccagcccctttgggagcccacagcaaa
ctctttttttttttttttaagatttatttatttattatatgtaagtacac
tgtggctgtcttcagacacaccagaagagggcgtcagatctcgtcatgga
tggttgtgaaccaccatgtggttgctgggatttgaactccggacctttgg
aaaagaagtcgggtgctcttacccactgaaccatctcaccagccccacag
caaactcttatacaagaagaagagggctgtgttgagggcctagacttcat
tttcttcctcctcttcctcctcctcctctttctcttcttcctcttcttcc
tcctcctcttcctcctcctccccccttcctcttcctcttcctcctccttc
tttttccaagacaggatttccctgtgtagccctgcctatcctgaaactca
ctctatagaccagactggcctcaaactcatagaaatccacctgcctctgc
ctcccgagtgctaggattaaaggcatgactcaccaccacccgactctggg
ctgtattttcttctatttgttggcatacttttgcacaagaacctctatgg
ctcccttcccacagagccaacttttgacatggcttcctgtactccaagaa
gttctactctggacctctccaggagcctggtgtgagtatgtctcctgaat
tgtctgtccttgctgtatctcctcctagagttagataagggttgtccagg
gcagaggagtcaaggtcagattcatttaagtaacagttctcaaccggtgg
ggtcatcaccattagagaacacatattttccattggtctttaggaactga
gacacctctcagtagcaaaataacagttttgaagtagcaacaaaaattaa
tttatggttgggggtttcctaagaccatcagaaatgtgtgcagttgcacc
cacaggttgaaactgctgatggagagtggtgtgcatttagctaaattccc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106064824_106065958
seq2: B6Ng01-305M06.b_47_1204

seq1  GAATTCAATGCTTTGACTTTATACATACTCTTGCATAATCTTTGGACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCTTTGACTTTATACATACTCTTGCATAATCTTTGGACCAG  50

seq1  AGAACTGGTCTGAAAAATGAACAGATTCAATCTTATCAGCATAGTGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGTCTGAAAAATGAACAGATTCAATCTTATCAGCATAGTGTGTA  100

seq1  AGAAAATGAACCATCTGAAAAAAAAAACAAAACAGAAAGAATATTAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGAACCATCTGAAAAAAAAAACAAAACAGAAAGAATATTAACTA  150

seq1  GTTTAGTGCACTCCCAAGCTTTCATAGATATTCACTTTTTAATCCATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTGCACTCCCAAGCTTTCATAGATATTCACTTTTTAATCCATACT  200

seq1  TTTATAAAATGTCATTCAGATTAAAATATTTCTTTTAAAAAAATTACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAATGTCATTCAGATTAAAATATTTCTTTTAAAAAAATTACCTC  250

seq1  ACCTTCAATTTAAAGAGATGGTTCTCTTAGTCCCAGCACTGGGGAGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAATTTAAAGAGATGGTTCTCTTAGTCCCAGCACTGGGGAGTCAT  300

seq1  GAGATCAAGGCCAGCCTGGACTACAAAAGCAAGTTCCAGCACAGCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAAGGCCAGCCTGGACTACAAAAGCAAGTTCCAGCACAGCCAGGG  350

seq1  CTATTCTCTGCAGTCACCCTCCAGCCTTAGTCCCTCCCATGACAGGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCTGCAGTCACCCTCCAGCCTTAGTCCCTCCCATGACAGGATCA  400

seq1  CAAGTGCCCACCCTGTGTGCCCACCTTTACTTATACAAACTGAAACTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCCCACCCTGTGTGCCCACCTTTACTTATACAAACTGAAACTCAA  450

seq1  GACTAGACTGAAGTCTTAAACAAACAAGCAAACCTGAATGTTGCCTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGACTGAAGTCTTAAACAAACAAGCAAACCTGAATGTTGCCTTGGA  500

seq1  GTGGCGGTGCACATCTTTATTTGTAGCATTTGGGGGGATAGAGGCAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGTGCACATCTTTATTTGTAGCATTTGGGGGGATAGAGGCAGGTG  550

seq1  GACCTCTATGAGCCAGGGTTACATAGTAAGACTCAAAAATTAAAACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTATGAGCCAGGGTTACATAGTAAGACTCAAAAATTAAAACAAAA  600

seq1  ACCTTGAAAGTCAATGGGTCTTTTAGAGAACTTTTTATTTTACTTGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAAAGTCAATGGGTCTTTTAGAGAACTTTTTATTTTACTTGTGCA  650

seq1  TGTCAATGTGTGTGCATGTGTGCTGTGTACCTGGGGAAGGCAGGAGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATGTGTGTGCATGTGTGCTGTGTACCTGGGGAAGGCAGGAGAGTC  700

seq1  ACATCCCTCATAGCTGGAGCTGTGGGACACTTAGCTTGTCAGGAAGGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTCATAGCTGGAGCTGTGGGACACTTAGCTTGTCAGGAAGGTGC  750

seq1  TAGGACAAGAGCTACAGTCCTTTCTTTTTTTTTTTTTCCCTGAGACAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAAGAGCTACAGTCCTTTCTTTTTTTTTTTTTCCCTGAGACAGGG  800

seq1  -TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAAACCAGGC  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAAACCAGGC  850

seq1  TGGCCTTGAACTCAGAAAT-CCGCCTACCTCTG-CCTCCCGAGTGTTGGG  897
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TGGCCTTGAACTCAGAAATCCCGCCTACCTCTGCCCTCCCGAGTGTTGGG  900

seq1  ATTAAAGGTGT-GTGCCACCACTG-CCCGGCCTGCAAG-CTACCGT-CCT  943
      ||||||||||| |||||||||||| ||| ||||||||| ||||||| |||
seq2  ATTAAAGGTGTGGTGCCACCACTGCCCCTGCCTGCAAGCCTACCGTCCCT  950

seq1  TACAATTGCTCGGTGCTCTTAACCGCATGC-TGTCTGTCTCC-TGGACTG  991
       |||| |||||||||||||||||||||||| ||||||||||| || ||||
seq2  AACAAATGCTCGGTGCTCTTAACCGCATGCTTGTCTGTCTCCTTGAACTG  1000

seq1  ACAGCCCTCTGCTGAG-CTATCAGC-AGGAGCAAGCAGTGCACAC-CTGT  1038
      |||||||||||||||| |||||||| ||||||||||||||||||| | | 
seq2  ACAGCCCTCTGCTGAGCCTATCAGCAAGGAGCAAGCAGTGCACACTCGGA  1050

seq1  AACTAATGAACGGCTC-AGAGGAGACCTGT-CCCAACTGT--AG-GAGAT  1083
      |||| ||||||||||| | || ||| || |  ||||||||  ||  | ||
seq2  AACT-ATGAACGGCTCAAAAGTAGAACTCTGTCCAACTGTGAAGAAAAAT  1099

seq1  C-ACCAGCTCAACATG-AGAG---CTAGCCAATGCCTCAAT-TAGAATG-  1126
      | ||  |||| ||||| ||||    |||||||||||||| | ||||| | 
seq2  CTACACGCTCCACATGTAGAGAACTTAGCCAATGCCTCACTATAGAACGT  1149

seq1  GCAGAAAAT  1135
      |||||||||
seq2  GCAGAAAAT  1158

seq1: chr11_106176176_106177226
seq2: B6Ng01-305M06.g_72_1121 (reverse)

seq1  GGGAATTTAGCTAAATGCACACCAACCTTCTCAATCAGCAGTTTTCAACC  50
      ||||||||||||||||||||||||    |||| |||||||| ||||||||
seq2  GGGAATTTAGCTAAATGCACACCA---CTCTCCATCAGCAG-TTTCAACC  46

seq1  TGTGGGTGGCAACTGCACACATTTCTGATGGTCTTAGG-AACCCCCAACC  99
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  TGTGGGT-GCAACTGCACACATTTCTGATGGTCTTAGGAAACCCCCAACC  95

seq1  ATAAATTAATTTTTGTTGCTACTTCAAAACTGTAATTTTGCTACTGAGAG  149
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAAATTAATTTTTGTTGCTACTTCAAAACTGTTATTTTGCTACTGAGAG  145

seq1  GTGTCTCAGTTCCT-AAGACCATTGG-AAATATGTGTTCTCTAATGGTGA  197
      |||||||||||||| ||||||| ||| |||||||||||||||||||||||
seq2  GTGTCTCAGTTCCTAAAGACCAATGGAAAATATGTGTTCTCTAATGGTGA  195

seq1  TGA-CCCACCGGTTGAGAACTGTTACTTAAATGAATCTGACCTTGACTCC  246
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCACCGGTTGAGAACTGTTACTTAAATGAATCTGACCTTGACTCC  245

seq1  TCTGCCCTGGACAACCCTTATCTAACTCTAGGAGGAGATACAGCAAGGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTGGACAACCCTTATCTAACTCTAGGAGGAGATACAGCAAGGAC  295

seq1  AGACAATTCAGGAGACATACTCACACCAGGCTCCTGGAGAGGTCCAGAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTCAGGAGACATACTCACACCAGGCTCCTGGAGAGGTCCAGAGT  345

seq1  AGAACTTCTTGGAGTACAGGAAGCCATGTCAAAAGTTGGCTCTGTGGGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCTTGGAGTACAGGAAGCCATGTCAAAAGTTGGCTCTGTGGGAA  395

seq1  GGGAGCCATAGAGGTTCTTGTGCAAAAGTATGCCAACAAATAGAAGAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCATAGAGGTTCTTGTGCAAAAGTATGCCAACAAATAGAAGAAAA  445

seq1  TACAGCCCAGAGTCGGGTGGTGGTGAGTCATGCCTTTAATCCTAGCACTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCCAGAGTCGGGTGGTGGTGAGTCATGCCTTTAATCCTAGCACTC  495

seq1  GGGAGGCAGAGGCAGGTGGATTTCTATGAGTTTGAGGCCAGTCTGGTCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGTGGATTTCTATGAGTTTGAGGCCAGTCTGGTCTA  545

seq1  TAGAGTGAGTTTCAGGATAGGCAGGGCTACACAGGGAAATCCTGTCTTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGAGTTTCAGGATAGGCAGGGCTACACAGGGAAATCCTGTCTTGG  595

seq1  AAAAAGAAGGAGGAGGAAGAGGAAGAGGAAGGGGGGAGGAGGAGGAAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGGAGGAGGAAGAGGAAGAGGAAGGGGGGAGGAGGAGGAAGAG  645

seq1  GAGGAGGAAGAAGAGGAAGAAGAGAAAGAGGAGGAGGAGGAAGAGGAGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAAGAAGAGGAAGAAGAGAAAGAGGAGGAGGAGGAAGAGGAGGA  695

seq1  AGAAAATGAAGTCTAGGCCCTCAACACAGCCCTCTTCTTCTTGTATAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGAAGTCTAGGCCCTCAACACAGCCCTCTTCTTCTTGTATAAGA  745

seq1  GTTTGCTGTGGGGCTGGTGAGATGGTTCAGTGGGTAAGAGCACCCGACTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGTGGGGCTGGTGAGATGGTTCAGTGGGTAAGAGCACCCGACTT  795

seq1  CTTTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGTTCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGTTCAC  845

seq1  AACCATCCATGACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCATGACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAG  895

seq1  CCACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAA  945

seq1  AAGAGTTTGCTGTGGGCTCCCAAAGGGGCTGGACTTAAGTAGAAACCACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTGCTGTGGGCTCCCAAAGGGGCTGGACTTAAGTAGAAACCACT  995

seq1  TAGGGAAAACCCACCACTTAACCATCATGGTTGAAGGGCCTTTTCCAGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAACCCACCACTTAACCATCATGGTTGAAGGGCCTTTTCCAGAG  1045

seq1  AATTC  1051
      |||||
seq2  AATTC  1050