BAC Information

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BAC

Clone NameB6Ng01-306I10
Chromosome11 (Build37)
Map Location 21,062,571 - 21,270,736
singlet/doubletdoublet
Overlap geneVps54, Ugp2
Upstream geneRab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035, Peli1
Downstream geneLOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1, LOC100042146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306I10.bB6Ng01-306I10.g
ACCGA099539GA099540
length7901,095
definitionB6Ng01-306I10.b B6Ng01-306I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,062,571 - 21,063,359)(21,269,639 - 21,270,736)
sequence
gaattctcttcacttgctaataatgcaggccgtactaatacagcaggatt
gaaatatagcccccccaaaatcatcaaagacagaaggtaaatagatagat
gataaatagataataaataagtagatgattaattgatagatagatagata
gatagatagatagatagatagatagatagatgactggccttattgctgta
agatttccttccttctcgaaagccccattcctggtgcagttggaaatatt
tgatcttgccaattaaagaccttagcttcttaagaagttggtggctcaag
cctttaatcccagcacttgggaggcagaggcaggcggatttctgaattcg
aggccagcctggtctacagagtgagttccaggacagccagggctacacag
agaaactctgtctcaaaaaaacaaaacaaaacaaaacaaaaaaacaaaaa
aaaaggaaaaagaaagaaaaaaaccattccttttttccttttcaaaatgt
ctctctcactgattttgctgaggaaattattctctctgtacttttttgac
ctacatggattcagttacttcctgcttcagccataattacagctttccat
agtagaagatgagccttgcatactttcctcccgtgtatcctgtctgactc
catcgttaaccctctggacctcagagtaagcatgggccccaggatctgga
aacatggtacaaaagctttgctgataattctcagagtttcattgatccat
aattgcctacttactggagggtggggatcggggagagagg
cagcatctccgagtcccggctatttatgggctggagaaaaggttgcgttg
ccccttcgccggcctccccgcctcccgatctacacggggcgccagcagct
cgccgctggacggccgccggcgaggggcctcggggtgcggccgggggcct
gcggcagtcctgccctagagggcgtggagaccggagggcggtgaagcggc
tctaggtccgcctctccattgatgaaatttaagttcgtctggttttacct
tttccggagtctccagtcgtcccctgttggtgtcgggatcgctgagtagc
ctggagttccctcccaagctgagtcggtcccaccaagttttccgtcttca
ggatttttctttttaaagactagttttgattttttttccccccgaattct
tctttaagtagttaaacatcggaggagaaagaacacttcggttgcaggga
agggagagagaccttccttacaacgtagattctagaaattgaaaattata
agccagattattttaataagatcctaaaatgtcgagatttgtacaaggta
agacattttgctttctgtctcttggctgcttcgtccgattttgaatattg
gtagtctctaagtaagtgggtagtttgtaactggaagtgttcatttgtga
taccgtttgccagacctttttggttaaattggtatttaagctgctttgcg
ccacttattgggttggcatttcatatacgtgtttgtatgcctctgcgccc
tgcaggggttatttctaccttctaaaatcagttttaatagtattctgaca
tcgtggatagtaattgtaaaaatcaaaacaggatttttgactgctgatta
attcttgttcccttcttgcactcgatgataagttagttattcttgtggga
caggaaacccagagggctagggacaggcagatgcgtttgtcaagactagt
agaagctctccacttctttttctgtgtgtacggtgatggagtctcaagta
tttattgcgaattcagtagttgtaagacactggaagtcataccagttcag
aaaatgactttgctgcaatgctcttagcttttcctttttaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_21062571_21063359
seq2: B6Ng01-306I10.b_47_836

seq1  GAATTCTCTTCACTTGCTAATAATGCAGGCCGTACTAATACAGCAGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCACTTGCTAATAATGCAGGCCGTACTAATACAGCAGGATT  50

seq1  GAAATATAGCCCCCCCAAAATCATCAAAGACAGAAGGTAAATAGATAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAGCCCCCCCAAAATCATCAAAGACAGAAGGTAAATAGATAGAT  100

seq1  GATAAATAGATAATAAATAAGTAGATGATTAATTGATAGATAGATAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAGATAATAAATAAGTAGATGATTAATTGATAGATAGATAGATA  150

seq1  GATAGATAGATAGATAGATAGATAGATAGATGACTGGCCTTATTGCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATGACTGGCCTTATTGCTGTA  200

seq1  AGATTTCCTTCCTTCTCGAAAGCCCCATTCCTGGTGCAGTTGGAAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCTTCCTTCTCGAAAGCCCCATTCCTGGTGCAGTTGGAAATATT  250

seq1  TGATCTTGCCAATTAAAGACCTTAGCTTCTTAAGAAGTTGGTGGCTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGCCAATTAAAGACCTTAGCTTCTTAAGAAGTTGGTGGCTCAAG  300

seq1  CCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAATTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAATTCG  350

seq1  AGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAG  400

seq1  AGAAACTCTGTCTCAAAAAAACAAAACAAAACAAAACAAAAAAACAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCTGTCTCAAAAAAACAAAACAAAACAAAACAAAAAAACAAAAA  450

seq1  AAAAGGAAAAAGAAAGAAAAAAACCATTCCTTTTTTCCTTTTCAAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAAGAAAGAAAAAAACCATTCCTTTTTTCCTTTTCAAAATGT  500

seq1  CTCTCTCACTGATTTTGCTGAGGAAATTATTCTCTCTGTACTTTTTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCACTGATTTTGCTGAGGAAATTATTCTCTCTGTACTTTTTTGAC  550

seq1  CTACATGGATTCAGTTACTTCCTGCTTCAGCCATAATTACAGCTTTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGATTCAGTTACTTCCTGCTTCAGCCATAATTACAGCTTTCCAT  600

seq1  AGTAGAAGATGAGCCTTGCATACTTTCCTCCCGTGTATCCTGTCTGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGATGAGCCTTGCATACTTTCCTCCCGTGTATCCTGTCTGACTC  650

seq1  CATCGTTAACCCTCTGGACCTCAGAGCAAGCATGGGCCCCAGGATCTGGA  700
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATCGTTAACCCTCTGGACCTCAGAGTAAGCATGGGCCCCAGGATCTGGA  700

seq1  AACATGGTAC-AAAGCTTTGCTTGATAATTCTCAGAGTTTCATTGATCCA  749
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  AACATGGTACAAAAGCTTTGC-TGATAATTCTCAGAGTTTCATTGATCCA  749

seq1  TAATTGCCTAC-TACTGGAGGGTGGGGATCGGGGAGAGAGG  789
      ||||||||||| |||||||||||||||||||||||||||||
seq2  TAATTGCCTACTTACTGGAGGGTGGGGATCGGGGAGAGAGG  790

seq1: chr11_21269639_21270736
seq2: B6Ng01-306I10.g_71_1165 (reverse)

seq1  ATATTAAAAAAGAAAAAGCTAAGAGCACTGCAGCAAAGTCATTTCTCTG-  49
      ||||| |||||| |||||||||||||| |||||||||||||||| |||| 
seq2  ATATTTAAAAAGGAAAAGCTAAGAGCATTGCAGCAAAGTCATTT-TCTGA  49

seq1  ACTGGTATGACCTCCAGTGTCTACAAACTACTGATTTCGCAATAAATTAC  99
      ||||||||||| ||||||||||   ||||||||| ||||||||||| |||
seq2  ACTGGTATGACTTCCAGTGTCTTACAACTACTGAATTCGCAATAAA-TAC  98

seq1  TCTGAGACTCAATCCACGTACACACAG-AAAAGAAGTGGAGAGCTTCCTA  148
      | |||||||| |||  ||||||||||| |||||||||||||||||| |||
seq2  T-TGAGACTCCATCACCGTACACACAGAAAAAGAAGTGGAGAGCTT-CTA  146

seq1  CTAGTCTTGACAAACGCATCTGCCTGTCCCTAGCCCTCTGGGTTTCCTTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTAGTCTTGACAAACGCATCTGCCTGTCCCTAGCCCTCTGGGTTTCC-TG  195

seq1  TCCCACAAAGATAACTAACTTATCATCGAGTGCAAGAAGGGAACAAGAAT  248
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAAGAATAACTAACTTATCATCGAGTGCAAGAAGGGAACAAGAAT  245

seq1  TAATCAGCAGTCAAAAATCCTGTTTTGATTTTTACAATTACTATCCACGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGCAGTCAAAAATCCTGTTTTGATTTTTACAATTACTATCCACGA  295

seq1  TGTCAGAATACTATTAAAACTGATTTTAGAAGGTAGAAATAACCCCTGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAATACTATTAAAACTGATTTTAGAAGGTAGAAATAACCCCTGCA  345

seq1  GGGCGCAGAGGCATACAAACACGTATATGAAATGCCAACCCAATAAGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCAGAGGCATACAAACACGTATATGAAATGCCAACCCAATAAGTGG  395

seq1  CGCAAAGCAGCTTAAATACCAATTTAACCAAAAAGGTCTGGCAAACGGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAGCAGCTTAAATACCAATTTAACCAAAAAGGTCTGGCAAACGGTA  445

seq1  TCACAAATGAACACTTCCAGTTACAAACTACCCACTTACTTAGAGACTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATGAACACTTCCAGTTACAAACTACCCACTTACTTAGAGACTAC  495

seq1  CAATATTCAAAATCGGACGAAGCAGCCAAGAGACAGAAAGCAAAATGTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCAAAATCGGACGAAGCAGCCAAGAGACAGAAAGCAAAATGTCT  545

seq1  TACCTTGTACAAATCTCGACATTTTAGGATCTTATTAAAATAATCTGGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTACAAATCTCGACATTTTAGGATCTTATTAAAATAATCTGGCT  595

seq1  TATAATTTTCAATTTCTAGAATCTACGTTGTAAGGAAGGTCTCTCTCCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTCAATTTCTAGAATCTACGTTGTAAGGAAGGTCTCTCTCCCT  645

seq1  TCCCTGCAACCGAAGTGTTCTTTCTCCTCCGATGTTTAACTACTTAAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCAACCGAAGTGTTCTTTCTCCTCCGATGTTTAACTACTTAAAGA  695

seq1  AGAATTCGGGGGGAAAAAAAATCAAAACTAGTCTTTAAAAAGAAAAATCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCGGGGGGAAAAAAAATCAAAACTAGTCTTTAAAAAGAAAAATCC  745

seq1  TGAAGACGGAAAACTTGGTGGGACCGACTCAGCTTGGGAGGGAACTCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACGGAAAACTTGGTGGGACCGACTCAGCTTGGGAGGGAACTCCAG  795

seq1  GCTACTCAGCGATCCCGACACCAACAGGGGACGACTGGAGACTCCGGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCAGCGATCCCGACACCAACAGGGGACGACTGGAGACTCCGGAAA  845

seq1  AGGTAAAACCAGACGAACTTAAATTTCATCAATGGAGAGGCGGACCTAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAACCAGACGAACTTAAATTTCATCAATGGAGAGGCGGACCTAGA  895

seq1  GCCGCTTCACCGCCCTCCGGTCTCCACGCCCTCTAGGGCAGGACTGCCGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTTCACCGCCCTCCGGTCTCCACGCCCTCTAGGGCAGGACTGCCGC  945

seq1  AGGCCCCCGGCCGCACCCCGAGGCCCCTCGCCGGCGGCCGTCCAGCGGCG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCCGGCCGCACCCCGAGGCCCCTCGCCGGCGGCCGTCCAGCGGCG  995

seq1  AGCTGCTGGCGCCCCGTGTAGATCGGGAGGCGGGGAGGCCGGCGAAGGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGGCGCCCCGTGTAGATCGGGAGGCGGGGAGGCCGGCGAAGGGG  1045

seq1  CAACGCAACCTTTTCTCCAGCCCATAAATAGCCGGGACTCGGAGATGCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCAACCTTTTCTCCAGCCCATAAATAGCCGGGACTCGGAGATGCTG  1095