BAC Information

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BAC

Clone NameB6Ng01-306L17
Chromosome11 (Build37)16 (Build37)
Map Location 47,752,170 - 47,753,26220,477,464 - 20,477,705
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306L17.bB6Ng01-306L17.g
ACCGA099686GA099687
length1,086117
definitionB6Ng01-306L17.b B6Ng01-306L17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,752,170 - 47,753,262)(20,477,464 - 20,477,705)
sequence
gaattccataatgacaggaggtcaaattcagctcccttaggtacagaggt
gaaaacaggatttctagaaatctttgttttagtgtgaatgatatatttct
aaattggcattcacttctagcaataattttcaaatttcccatgcatgcaa
cacatttttcagagcctatcatttgaagggaagcaatgatgaccaaagat
ttggatccaggtgctatcacatgacataatgagtttgagattattgaaat
gcggctcagactttgggaaaggcatctgcaattatcacagtggcctcttg
acctcctcacttcagagctgctgtcttatctgtatatattctgttcaaat
attcttctcttcttgtttaccagtttggttccatgatccttaaggatatg
gaaggccctcatatagatgctaaagggtatttcctatcatactttcaatc
atctctaacttacttatatctaatatagtataatatatatatatatatat
atatatacacacatatatattgtttagaaaatagtaacataagaatgtga
acatcttaagcacaaatattactttttgaatattttctatatgtatagtt
gattggatcaataaaaatggaatgttggatatggaagactggctgtatat
ttttaaaaaattgcataattttgccttcgattgtgtattatatactctga
gaggtaaaaataaaaattaaactaccccacaaaagtttgaatgttatctt
tgagataaatctagatgtcatccaatctagtcattttaaaattggggaaa
ttgatgcccagagaaataagtctaccaagaagcaagaaattcaatttaac
atatctcttaagttttagaaaaaaaaaatcttggggaataaaagaaatat
ttctttactctgatttgctttgagagctttatatcagttagtaccagagt
ctatactacattaatagtaatcatcattcctcaacaaatcttcagttgaa
agattagcaatatataacttctagtggggtttatattctgtcatgtctta
taaacatatataatcaaattaacttcaaaagtgttt

acctttttggggggaactcaaaaagggcaatagcattagcctctattatt
tgcaggtctcttagaatcttctgtccaactgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47752170_47753262
seq2: B6Ng01-306L17.b_51_1136 (reverse)

seq1  AAACACTTTTTGAAGTATATTTGATTATAATATGTTTATAAAGACATGAC  50
      |||||| |||||||||  |||||||||| |||||||||| ||||||||||
seq2  AAACAC-TTTTGAAGTTAATTTGATTAT-ATATGTTTAT-AAGACATGAC  47

seq1  AGAATATAAACCCCACTAGAAGTTAATATATTTGCTTATCTTTCCAACTG  100
      |||||||||||||||||||||||| ||||| ||||| |||||| ||||||
seq2  AGAATATAAACCCCACTAGAAGTT-ATATA-TTGCTAATCTTT-CAACTG  94

seq1  AAGATTTGTTGAGGAATGATGATTACTATTAATGTAGTTATAAGACTCTG  150
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  AAGATTTGTTGAGGAATGATGATTACTATTAATGTAG-TAT-AGACTCTG  142

seq1  GTACTAACTGATTATAAAGCTCTCAAAGCAAATCAGAGTAAAGAAATATT  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTACTAACTGA-TATAAAGCTCTCAAAGCAAATCAGAGTAAAGAAATATT  191

seq1  TC-TTTATTCCCAAAGA-TTTTTTTTTCTAAAACTTAAGAGATATGTTAA  248
      || ||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  TCTTTTATTCCCCAAGATTTTTTTTTTCTAAAACTTAAGAGATATGTTAA  241

seq1  ATTGAATTTCTTGCTTCTTGGTAGACTTATTTCTCTGGGCATCAATTTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTTCTTGCTTCTTGGTAGACTTATTTCTCTGGGCATCAATTTCC  291

seq1  CCAATTTTAAAATGACTAGATTGGATGACATCTAGATTTATCTCAAAGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTAAAATGACTAGATTGGATGACATCTAGATTTATCTCAAAGAT  341

seq1  AACATTCAAACTTTTGTGGGGTAGTTTAATTTTTATTTTTACCTCTCAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCAAACTTTTGTGGGGTAGTTTAATTTTTATTTTTACCTCTCAGA  391

seq1  GTATATAATACACAATCGAAGGCAAAATTATGCAATTTTTTAAAAATATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAATACACAATCGAAGGCAAAATTATGCAATTTTTTAAAAATATA  441

seq1  CAGCCAGTCTTCCATATCCAACATTCCATTTTTATTGATCCAATCAACTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTCTTCCATATCCAACATTCCATTTTTATTGATCCAATCAACTA  491

seq1  TACATATAGAAAATATTCAAAAAGTAATATTTGTGCTTAAGATGTTCACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATAGAAAATATTCAAAAAGTAATATTTGTGCTTAAGATGTTCACA  541

seq1  TTCTTATGTTACTATTTTCTAAACAATATATATGTGTGTATATATATATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGTTACTATTTTCTAAACAATATATATGTGTGTATATATATATA  591

seq1  TATATATATATATTATACTATATTAGATATAAGTAAGTTAGAGATGATTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATTATACTATATTAGATATAAGTAAGTTAGAGATGATTG  641

seq1  AAAGTATGATAGGAAATACCCTTTAGCATCTATATGAGGGCCTTCCATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGATAGGAAATACCCTTTAGCATCTATATGAGGGCCTTCCATAT  691

seq1  CCTTAAGGATCATGGAACCAAACTGGTAAACAAGAAGAGAAGAATATTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGGATCATGGAACCAAACTGGTAAACAAGAAGAGAAGAATATTTG  741

seq1  AACAGAATATATACAGATAAGACAGCAGCTCTGAAGTGAGGAGGTCAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATATATACAGATAAGACAGCAGCTCTGAAGTGAGGAGGTCAAGA  791

seq1  GGCCACTGTGATAATTGCAGATGCCTTTCCCAAAGTCTGAGCCGCATTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGTGATAATTGCAGATGCCTTTCCCAAAGTCTGAGCCGCATTTC  841

seq1  AATAATCTCAAACTCATTATGTCATGTGATAGCACCTGGATCCAAATCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCTCAAACTCATTATGTCATGTGATAGCACCTGGATCCAAATCTT  891

seq1  TGGTCATCATTGCTTCCCTTCAAATGATAGGCTCTGAAAAATGTGTTGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCATTGCTTCCCTTCAAATGATAGGCTCTGAAAAATGTGTTGCA  941

seq1  TGCATGGGAAATTTGAAAATTATTGCTAGAAGTGAATGCCAATTTAGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGAAATTTGAAAATTATTGCTAGAAGTGAATGCCAATTTAGAAA  991

seq1  TATATCATTCACACTAAAACAAAGATTTCTAGAAATCCTGTTTTCACCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATTCACACTAAAACAAAGATTTCTAGAAATCCTGTTTTCACCTC  1041

seq1  TGTACCTAAGGGAGCTGAATTTGACCTCCTGTCATTATGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTAAGGGAGCTGAATTTGACCTCCTGTCATTATGGAATTC  1086


seq1: chr16_20477464_20477705
seq2: B6Ng01-306L17.g_142_189 (reverse)

seq1  CACACACACACACACACACACACACACACACACATACA---CGGCAGATA  47
      |||||||||||||||||||||||||||||||||| |||    | ||||  
seq2  CACACACACACACACACACACACACACACACACACACAGTTGGACAGA--  48

seq1  GCCCCCCATACACACACACACTAGGCAAACAGCCCTTCCCCACTAGGCAG  97
                                                        
seq2  --------------------------------------------------  48

seq1  ACAGCTCTCTAGCTTGCTCTCTCTCTCTCTCTCACACATACACGGAAGAT  147
                                                        
seq2  --------------------------------------------------  48

seq1  AGCCCCCCCACACACACACACACTAGGCAAACAGCCCTTCCCCACTAGGC  197
                                                        
seq2  --------------------------------------------------  48

seq1  AGACAGCCCCACACACTCACACACACACACACACACAGGGACAGA  242
                                                   
seq2  ---------------------------------------------  48


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