BAC Information

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BAC

Clone NameB6Ng01-306O20
Chromosome11 (Build37)
Map Location 54,254,678 - 54,255,731
singlet/doubletsinglet
Overlap geneFnip1
Upstream geneShroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411
Downstream geneRapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306O20.bB6Ng01-306O20.g
ACCGA099834GA099835
length1,1671,049
definitionB6Ng01-306O20.b B6Ng01-306O20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggttatcaggcttggtgccaagcatctttacctgttgacccat
gtcaccatgctcaaattcaagaaattcctacgctgaggttgctaatatct
ttagaaatgagtcttttacctgtgaaataggtgtactggctagtcttgtg
tcaacttgacacagctggagttatcacaggaaaaggagcttcagttgagg
aaatgcctccatgagatccaactgtaaggcattttctcaattagtgatca
aggggaaaggccccttgtgggtgggaccatctctgggctggcagtcttag
gttctataagagagcaggctgagcaagccaggggaagcaagccagtaaag
aacatccctccatggcctctgcatcagctcctgcttcctgacctgcttga
gttccagtcctgacttctttcagtgatgaacagcaatgtggaagagtaag
ctgaataaaccctttgctcaccaactgcttcttggtcatgatgtttgtgc
aggaatagaaaccctgactaagacaaaagggaaaggcaaagaacatcttg
tactgttttgctggcatatatcaaactaaagaaaggcacagtaatattca
ggttaagatgaagaagacaataaacttgaagaagaaagacatgcattcaa
atgatggcaatgtggtacacaaaagcaataggcctacatcaagacctcgg
taaaggatcccctgaaatgagtgacaccaagccattcattataagtaagg
gatggctatgatcatttaggattcagtttggaccaaaaaataaaaaaaat
gtctggtaagcggtatttgcaaataaaaaagctgctgccacattctattt
agcacgagcagtgtgcttatcaagttaacctgaactcatactttcattct
catttattagcttacttgactttatttactttaacatctttatgaagtga
ttgcattgctgagtgtttacagactatagacactaggcaagtcctttaat
aaacctgtagttatcactaaacatacatattccccagactatacactacc
caataaaccacaatcaaacactcagaacaaataagctcaccactgacaga
cacataactagaaacttacctaagcctaaaaacagtgtgctggcatatgg
aacacgggcccgaaatt
gaattcaacctttccatgaattctgggaatgatcactaagcttgtgtggc
aagtacctttaacctctgagccatctcactagcccctaataattttttta
gtctttatttataactattatggggtatatagtaatattgcattgttttc
atttttgccttaggtgttggccaaaatttttttttttaatgtgaccggag
tttggagtgattgaaattgtatgtgtgtatgcagtagtcagtttgactga
ccaaaatttatgtgtgtttgtgcatgtgagcataagttcacatgctagtc
agcttatattgttaagtcactttttggaaaaatatttattttatgtgcat
gtgtgttttgccttcatatgtatgcagtgccttctgaaaaggacatgaat
ttcacagaactggagttacagatagttgttagttgttgtgtaggtgatag
aaatcaaacctgagtcctctggaagagctgctagagctcttaacctctga
gccatctctccagctccttaaattgttaaatcacacaaaggcacagacat
tggcaactacctatttccaagaggcagtttttagagcaatcagtgtacaa
ggcccagtagtggttagccatagaggcactttgttataggagatacattt
gacaaagaagccataaatatgtttctatattgtcttttatggctaaccca
ttagaaaagatagccaggaactgctgcctttctgctatttttcaatctta
ggatggtccctactaaacagagtcctgtgggcttgcttcatctgtttctt
gaactggagatgagcttaggatattttttcagacacttgtagaacgatat
ttttttcttttgagaggaggctttactatttgttcaagctgggcctcagt
tgaactgacttcaaagtcagtcttcctgccttcgtccagaggaagggata
cagacctatgccatcatgcccagagtcattatagatggaaatggcaattt
atttaggtcatctaagatttgagatgaaagcactgtttagagattttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54254678_54255731
seq2: B6Ng01-306O20.g_65_1113

seq1  GAATTCAACCTTTCCATGAATTCTGGGAATGATCACTAAGCTTGTGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTTCCATGAATTCTGGGAATGATCACTAAGCTTGTGTGGC  50

seq1  AAGTACCTTTAACCTCTGAGCCATCTCACTAGCCCCTAATAATTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCTTTAACCTCTGAGCCATCTCACTAGCCCCTAATAATTTTTTTA  100

seq1  GTCTTTATTTATAACTATTATGGGGTATATAGTAATATTGCATTGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTTATAACTATTATGGGGTATATAGTAATATTGCATTGTTTTC  150

seq1  ATTTTTGCCTTAGGTGTTGGCCAAAATTTTTTTTTTTAATGTGACCGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCCTTAGGTGTTGGCCAAAATTTTTTTTTTTAATGTGACCGGAG  200

seq1  TTTGGAGTGATTGAAATTGTATGTGTGTATGCAGTAGTCAGTTTGACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTGATTGAAATTGTATGTGTGTATGCAGTAGTCAGTTTGACTGA  250

seq1  CCAAAATTTATGTGTGTTTGTGCATGTGAGCATAAGTTCACATGCTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTTATGTGTGTTTGTGCATGTGAGCATAAGTTCACATGCTAGTC  300

seq1  AGCTTATATTGTTAAGTCACTTTTTGGAAAAATATTTATTTTATGTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATATTGTTAAGTCACTTTTTGGAAAAATATTTATTTTATGTGCAT  350

seq1  GTGTGTTTTGCCTTCATATGTATGCAGTGCCTTCTGAAAAGGACATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTGCCTTCATATGTATGCAGTGCCTTCTGAAAAGGACATGAAT  400

seq1  TTCACAGAACTGGAGTTACAGATAGTTGTTAGTTGTTGTGTAGGTGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAACTGGAGTTACAGATAGTTGTTAGTTGTTGTGTAGGTGATAG  450

seq1  AAATCAAACCTGAGTCCTCTGGAAGAGCTGCTAGAGCTCTTAACCTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAACCTGAGTCCTCTGGAAGAGCTGCTAGAGCTCTTAACCTCTGA  500

seq1  GCCATCTCTCCAGCTCCTTAAATTGTTAAATCACACAAAGGCACAGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTCCAGCTCCTTAAATTGTTAAATCACACAAAGGCACAGACAT  550

seq1  TGGCAACTACCTATTTCCAAGAGGCAGTTTTTAGAGCAATCAGTGTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACTACCTATTTCCAAGAGGCAGTTTTTAGAGCAATCAGTGTACAA  600

seq1  GGCCCAGTAGTGGTTAGCCATAGAGGCACTTTGTTATAGGAGATACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGTAGTGGTTAGCCATAGAGGCACTTTGTTATAGGAGATACATTT  650

seq1  GACAAAGAAGCCATAAATATGTTTCTATATTGTCTTTTATGGCTAACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAAGCCATAAATATGTTTCTATATTGTCTTTTATGGCTAACCCA  700

seq1  TTAGAAAAGATAGCCAGGAACTGCTGCCTTTCTGCTATTTTTCAATCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAGATAGCCAGGAACTGCTGCCTTTCTGCTATTTTTCAATCTTA  750

seq1  GGATGGTCCCTACTAAACAGAGTCCTGTGGGCTTGCTTCATCTGTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTCCCTACTAAACAGAGTCCTGTGGGCTTGCTTCATCTGTTTCTT  800

seq1  GAACTGGAGATGAGCTTAGGATA-TTTTTCAGACACTTGTAGAACGATAT  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAACTGGAGATGAGCTTAGGATATTTTTTCAGACACTTGTAGAACGATAT  850

seq1  TTTTTTCTTTTGAGAGGAGGCTTTACTATTTTGTTCAAGCT-GGCCTCAG  898
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  TTTTTTCTTTTGAGAGGAGGCTTTACTA-TTTGTTCAAGCTGGGCCTCAG  899

seq1  TTGAACTGACTTCAAAGTCAGTCTTCCTGCCTTCGTCCAGAGGAAGGGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGAACTGACTTCAAAGTCAGTCTTCCTGCCTTCGTCCAGAGGAAGGGA-  948

seq1  TACAGACCTATGCCACCATGCCCAGAGTCATTATAGAATGGAAATGGCAA  998
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  TACAGACCTATGCCATCATGCCCAGAGTCATTATAG-ATGGAAATGGCAA  997

seq1  TTTATTTAGGTCATCTAAAGAATTTGAGAATGAAGGCACTGTTTAGAAGA  1048
      ||||||||||||||||||   ||||||| ||||| ||||||||||| |||
seq2  TTTATTTAGGTCATCTAA--GATTTGAG-ATGAAAGCACTGTTTAG-AGA  1043

seq1  TTTTGC  1054
      ||||||
seq2  TTTTGC  1049