BAC Information

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BAC

Clone NameB6Ng01-307F19
Chromosome11 (Build37)
Map Location 37,095,810 - 37,248,174
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148, LOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307F19.bB6Ng01-307F19.g
ACCGA100154GA100155
length1,1011,153
definitionB6Ng01-307F19.b B6Ng01-307F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,095,810 - 37,096,929)(37,247,027 - 37,248,174)
sequence
gaattccaaatgtcactctactgcagcattgacagttccatacaattttg
tattttcatacatatatgtaaagccatataaaatataaatattttttcag
tgtcttgaaaaaaattcataaaggtttacacagtatatataacttctagt
ttgtttttacttcacactgtttttaaaatgcatgctaataagtgtagttc
tggtttcttaaactcaatacatttacaaaaccatactgtatgaataaacc
aaactccagtttatttctatttttcctccttaaagttttagatggctcta
cttctttattttttccttcctttttattttttcaccattaccagtgctat
gaataataactttttctccaaagtaagagtgatttcttggggggagacac
ctggaaatcagagaggaagctgaagagcatgtatgattttatgtaatatt
actaaaataaacttgaaaatgttcaaatgtataattaaaacaagacgatc
tctcactacttctattgactatactcacctatttcttttatcaaatttaa
tttgttttccatcatccagaaataaatgtggtcttgaattagctctttgt
tatgttgattaaaactaggttgaacagaatttcctatgcttattttccat
actggttgctttgctcaaagaactgttaccaccacttggccacattctat
tcaatcaatgttttttattcatttatttatttaacaaatactcattgaag
acccactcttttcagctattttgtgtatgctaaaataatacaaaaccaac
caaacaaaaccccaaaataaacaaacaaaaaaatcatccaaaaacctgcc
tttgtgcagaggaattatcatctgtagccttactcagctatggatccttt
gggcaccaatacagattagtcagaaaaatacgctcactgctgcaatagtg
cagtctgtatggagcatcatggcttcctgataaatatgatgctcacacca
cagatgaattcacgtttgatatgtaaactagtcaagtcatagtccagctg
atgttttttctggtatttggctaaacagatagtatatatctatcaattgc
t
gaattcaatttcaaatgttgtgagtgaatttttaaaatgatgtgttatat
gcatgcaggtgtgaagaaatctggtggaatcacaagtgtacaagtcttca
tgtgtcatgttgttttttttcctctccaaagattataaaagcagaaagtt
tttttttttttcgttcctctgcagacctcttccaccgaccaacatcaatt
tataacaagatcagcagctggctgctatctgaatctagatgttaggattg
ttatagtttctagaatccagactaataatttagcattcatatttgggagg
tcatgagttgctatgtttgctgcagttcatctagacatccatggagtgtt
ttgaaaaatgaaattttatttttaggagatttgttcataactttttattc
tatgtatgcttggaggagcttgggtgtgtgtatgtgcaccacctatatgt
aagtatgcagtggggccattagagggcaatagaatgcctgaaactgaagt
cacaggtagttatgaaccactctatgtgggtctgaaaactgaaccagggt
cccctttaacactctaagattaaatcatctttctagttccaaaatgctca
tgttttgaggggatcacgaattgacaaatttccatgcaggcgtgggcttc
cttttaccactttcactgacttcatttttccagagtgaaaagttagtgtg
aaaatacaaacattcatagaaaagtgtgtatgacgcctgctagaattata
aattagttgttcattagaacccagtttaatttcatgttgctaatatgata
aggacaaatttttatccacattctttttttattagtattcagagaaatgg
tatataagaagtattattactattaatattactaggcttaatagatgaaa
aaatttcaggaacctgaggttactttgttttaagcagtctaagaagcact
gaatcacagaacctgggcaccaaatgctgcttaatgtcatttctcttcgt
atttagcttctaacattccaaaaaaaaaaaaaaaatgttctggagggtaa
tcagtttataaggaaaagaaaagattaattcggttcaagaagattcaatt
ctatggttcggttgatctcttattgcttcggactatggcaggcagtgcat
gat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37095810_37096929
seq2: B6Ng01-307F19.b_44_1144

seq1  GAATTCCAAATGTCACTCTACTGCAGCATTGACAGTTCCATACAATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGTCACTCTACTGCAGCATTGACAGTTCCATACAATTTTG  50

seq1  TATTTTCATACATATATGTAAAGCCATATAAAATATAAATATTTTTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATACATATATGTAAAGCCATATAAAATATAAATATTTTTTCAG  100

seq1  TGTCTTGAAAAAAATTCATAAAGGTTTACACAGTATATATAACTTCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGAAAAAAATTCATAAAGGTTTACACAGTATATATAACTTCTAGT  150

seq1  TTGTTTTTACTTCACACTGTTTTTAAAATGCATGCTAATAAGTGTAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTACTTCACACTGTTTTTAAAATGCATGCTAATAAGTGTAGTTC  200

seq1  TGGTTTCTTAAACTCAATACATTTACAAAACCATACTGTATGAATAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTAAACTCAATACATTTACAAAACCATACTGTATGAATAAACC  250

seq1  AAACTCCAGTTTATTTCTATTTTTCCTCCTTAAAGTTTTAGATGGCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAGTTTATTTCTATTTTTCCTCCTTAAAGTTTTAGATGGCTCTA  300

seq1  CTTCTTTATTTTTTCCTTCCTTTTTATTTTTTCACCATTACCAGTGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTATTTTTTCCTTCCTTTTTATTTTTTCACCATTACCAGTGCTAT  350

seq1  GAATAATAACTTTTTCTCCAAAGTAAGAGTGATTTCTTGGGGGGAGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATAACTTTTTCTCCAAAGTAAGAGTGATTTCTTGGGGGGAGACAC  400

seq1  CTGGAAATCAGAGAGGAAGCTGAAGAGCATGTATGATTTTATGTAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATCAGAGAGGAAGCTGAAGAGCATGTATGATTTTATGTAATATT  450

seq1  ACTAAAATAAACTTGAAAATGTTCAAATGTATAATTAAAACAAGACGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATAAACTTGAAAATGTTCAAATGTATAATTAAAACAAGACGATC  500

seq1  TCTCACTACTTCTATTGACTATACTCACCTATTTCTTTTATCAAATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTACTTCTATTGACTATACTCACCTATTTCTTTTATCAAATTTAA  550

seq1  TTTGTTTTCCATCATCCAGAAATAAATGTGGTCTTGAATTAGCTCTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCCATCATCCAGAAATAAATGTGGTCTTGAATTAGCTCTTTGT  600

seq1  TATGTTGATTAAAACTAGGTTGAACAGAATTTCCTATGCTTATTTTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGATTAAAACTAGGTTGAACAGAATTTCCTATGCTTATTTTCCAT  650

seq1  ACTGGTTGCTTTGCTCAAAGAACTGTTACCACCACTTGGCCACATTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTGCTTTGCTCAAAGAACTGTTACCACCACTTGGCCACATTCTAT  700

seq1  TCAATCAATGTTTTTTATTCATTTATTTATTTAACAAATACTCATTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAATGTTTTTTATTCATTTATTTATTTAACAAATACTCATTGAAG  750

seq1  ACCCACTCTTTTCAGCTATTTTGTGTATGCTAAAATAATACAAAACCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCTTTTCAGCTATTTTGTGTATGCTAAAATAATACAAAACCAAC  800

seq1  CAAACAAAACCCCAAAATAAACAAACAAAAAAATCATCCAAAAACCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAACCCCAAAATAAACAAACAAAAAAATCATCCAAAAACCTGCC  850

seq1  TTTGTGCAGAGGAATTATCATCTGTAGCCTTACTCAGCTATGGATCCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCAGAGGAATTATCATCTGTAGCCTTACTCAGCTATGGATCCTTT  900

seq1  GGGCACCAATACAGATTAGTCAGGAAAAATACGCTCACTGCTGCAATAGT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGCACCAATACAGATTAGTCA-GAAAAATACGCTCACTGCTGCAATAGT  949

seq1  GGCAAGTCTGTTATGGAGCAATCAATGGCTTCCTGATTAAATATGATGCT  1000
      |   |||||| |||||||| ||| |||||||||||| |||||||||||||
seq2  G--CAGTCTG-TATGGAGC-ATC-ATGGCTTCCTGA-TAAATATGATGCT  993

seq1  CACACCACAGGAATGAATTCACGTTTGATATTGTAAACCTAGTCAAAAGT  1050
      ||||||||||  |||||||||||||||||| |||||| ||||||  ||||
seq2  CACACCACAG--ATGAATTCACGTTTGATA-TGTAAA-CTAGTC--AAGT  1037

seq1  CCATAGGTCCCAGGCTGAATGTTTTTTCTGTTATTTTGCTAAACAGATAG  1100
       |||| ||||   |||| |||||||||||| ||||| |||||||||||||
seq2  -CATA-GTCC--AGCTG-ATGTTTTTTCTGGTATTTGGCTAAACAGATAG  1082

seq1  TATATATCTATCAAATTGCT  1120
      |||||||||||| |||||||
seq2  TATATATCTATC-AATTGCT  1101

seq1: chr11_37247027_37248174
seq2: B6Ng01-307F19.g_66_1218 (reverse)

seq1  ATCATGCACTGCCTTCCCATAGTCCCAAAGGCAATA--GGAACAA-CGGA  47
      ||||||||||||| | ||||||||| ||  ||||||   || ||| || |
seq2  ATCATGCACTGCC-TGCCATAGTCCGAA--GCAATAAGAGATCAACCGAA  47

seq1  CCATAG-ATTGAAATCTCTGAAACCAAAATAAATCTTTCTTT--CTTATA  94
      |||||| ||||||   |||  |||| || |||   |||||||  ||||||
seq2  CCATAGAATTGAATCTTCTTGAACCGAATTAATCTTTTCTTTTCCTTATA  97

seq1  AACTGATTACCCT-CAG-ACA-TTTTTTTTTTTTTTTGGAATGTTAGGAA  141
      ||||||||||||| ||| ||| |||||||||||||||||||||||| |||
seq2  AACTGATTACCCTCCAGAACATTTTTTTTTTTTTTTTGGAATGTTA-GAA  146

seq1  GCTAAATAACGAAGAGAAATGACATAAAGCAGCATTTGGGTGCCCAGGTT  191
      ||||||| ||||||||||||||||| ||||||||||| ||||||||||||
seq2  GCTAAAT-ACGAAGAGAAATGACATTAAGCAGCATTT-GGTGCCCAGGTT  194

seq1  CTGTGATTCAGTGCTTCTTAGACTGCTTAAAAC-AAGTAACCTCAGGTTC  240
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGTGATTCAGTGCTTCTTAGACTGCTTAAAACAAAGTAACCTCAGGTTC  244

seq1  CTGAAATTTTTTCATCTATTAAG-CTAGTAATATTAATAGTAATAATACT  289
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGAAATTTTTTCATCTATTAAGCCTAGTAATATTAATAGTAATAATACT  294

seq1  TCTTATATACCATTTCTCTGAATACTAATAAAAAAAGAATGTGGATAAAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATACCATTTCTCTGAATACTAATAAAAAAAGAATGTGGATAAAA  344

seq1  ATTTGTCCTTATCATATTAGCAACATGAAATTAAACTGGGTTCTAATGAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCTTATCATATTAGCAACATGAAATTAAACTGGGTTCTAATGAA  394

seq1  CAACTAATTTATAATTCTAGCAGGCGTCATACACACTTTTCTATGAATGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAATTTATAATTCTAGCAGGCGTCATACACACTTTTCTATGAATGT  444

seq1  TTGTATTTTCACACTAACTTTTCACTCTGGAAAAATGAAGTCAGTGAAAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTCACACTAACTTTTCACTCTGGAAAAATGAAGTCAGTGAAAG  494

seq1  TGGTAAAAGGAAGCCCACGCCTGCATGGAAATTTGTCAATTCGTGATCCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAAGGAAGCCCACGCCTGCATGGAAATTTGTCAATTCGTGATCCC  544

seq1  CTCAAAACATGAGCATTTTGGAACTAGAAAGATGATTTAATCTTAGAGTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACATGAGCATTTTGGAACTAGAAAGATGATTTAATCTTAGAGTG  594

seq1  TTAAAGGGGACCCTGGTTCAGTTTTCAGACCCACATAGAGTGGTTCATAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGGGACCCTGGTTCAGTTTTCAGACCCACATAGAGTGGTTCATAA  644

seq1  CTACCTGTGACTTCAGTTTCAGGCATTCTATTGCCCTCTAATGGCCCCAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTGACTTCAGTTTCAGGCATTCTATTGCCCTCTAATGGCCCCAC  694

seq1  TGCATACTTACATATAGGTGGTGCACATACACACACCCAAGCTCCTCCAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTTACATATAGGTGGTGCACATACACACACCCAAGCTCCTCCAA  744

seq1  GCATACATAGAATAAAAAGTTATGAACAAATCTCCTAAAAATAAAATTTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATAGAATAAAAAGTTATGAACAAATCTCCTAAAAATAAAATTTC  794

seq1  ATTTTTCAAAACACTCCATGGATGTCTAGATGAACTGCAGCAAACATAGC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAAACACTCCATGGATGTCTAGATGAACTGCAGCAAACATAGC  844

seq1  AACTCATGACCTCCCAAATATGAATGCTAAATTATTAGTCTGGATTCTAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGACCTCCCAAATATGAATGCTAAATTATTAGTCTGGATTCTAG  894

seq1  AAACTATAACAATCCTAACATCTAGATTCAGATAGCAGCCAGCTGCTGAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAACAATCCTAACATCTAGATTCAGATAGCAGCCAGCTGCTGAT  944

seq1  CTTGTTATAAATTGATGTTGGTCGGTGGAAGAGGTCTGCAGAGGAACGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATAAATTGATGTTGGTCGGTGGAAGAGGTCTGCAGAGGAACGAA  994

seq1  AAAAAAAAAAACTTTCTGCTTTTATAATCTTTGGAGAGGAAAAAAAACAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACTTTCTGCTTTTATAATCTTTGGAGAGGAAAAAAAACAA  1044

seq1  CATGACACATGAAGACTTGTACACTTGTGATTCCACCAGATTTCTTCACA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACATGAAGACTTGTACACTTGTGATTCCACCAGATTTCTTCACA  1094

seq1  CCTGCATGCATATAACACATCATTTTAAAAATTCACTCACAACATTTGAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGCATATAACACATCATTTTAAAAATTCACTCACAACATTTGAA  1144

seq1  ATTGAATTC  1148
      |||||||||
seq2  ATTGAATTC  1153