BAC Information

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BAC

Clone NameB6Ng01-308J08
Chromosome11 (Build37)
Map Location 69,087,324 - 69,208,645
singlet/doubletdoublet
Overlap geneCntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1
Upstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e
Downstream geneLsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308J08.bB6Ng01-308J08.g
ACCGA101045GA101046
length1,087732
definitionB6Ng01-308J08.b B6Ng01-308J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,207,564 - 69,208,645)(69,087,324 - 69,088,053)
sequence
gaattcaaaggtaagggacacacggtagggaagggctggagagctggttc
tggcccttgggtggccggccattgacggcctctgtttctttttaggggac
ctactgttgaaacccatcctggaggtcgcaggccaggacataagtcactg
gtttgatccacagactagagacgtaagttctgctggtatggggtcggtgg
aagcggcactggagagcagaggagggatggcggggaataactcgaactcg
aaatagtgattgctccgatccgtctctccaaatccttgcttttgaagatt
cgcaagcatatagatccactcactggttgcatgagataccgtaccccgcg
gggccgcttcgtacatatcccgccgccactgccccgttcagattgggcca
atgatttcggagtaccctggtggaagggggcaaattaccaggtgggacga
ctgtctgctcggacccggaacatccgtattattaacactcttgcaacgca
ggagcacacactgcaggtgagctctggcgcctggggacgtactagaggaa
ccagaaatcatttctgggagttaacacgacagaggaaagcagatggtcct
ggtacccagagttggaaattccagaagtatgtttgtattacagctccctc
agtctccttcatagctctaggccagcatcttggtggtggtccttggaagg
gtttatatgctgttatggacccattgtaaatgagagacaccagctttgac
tctattgagtcatttatttgttagaagtgataggacttggtgtctttata
gtatgctgtagcatcaactttccttacctgggactgtgggatgcctgaag
agtgctatctggtaatggaggcactctgattcaagctctgtcatttctgg
tgactgattctcttcttttttttttttttttttttttaagatttattaat
tcttaatatgtaagtaccactgtagctgtcctcaaaccactccaaaaaga
aggaccgctagatctttggtaggattggtttgtgagcccaccatgtgatg
cttggtatatgacttcatgacccttcagaagaacagt
gaattcctagagctcattgctagccagtccagttcactgagttccaggtt
cagtgaaaaacctctgcctcaaaaaaaaaagaaaaagaaaaacgaaagga
agggagggaggaagagagagagaggagagagagagagaaaaaaaagctgg
gtggttagatctctaacttcgaggccagcctgctctacaaagtgagtttc
aggacagctagggctacacagagaaaccttgtctcaaaaactaaaacaac
aacaacaataaatataataatgatgagatgcagtgcagtggaagaagaca
cctcacatcagcccacacagcaggtaagtacatacctgcatataaacata
cataccactcagtcaaaaatacactttcaaaaagcaaaactgaaaaagat
ttgtatgtacttcatggaacttatttgtaataaaattaaaaatttaaatg
ttgagccaggcgtggtggcgcacacttttaatcccagcactcgggaggca
gaggcaggcggatttctgagttcgaggccaacctggtctacaaagtgagt
tccaggacagccagggctatacagagaaaccctgtctcaaaaactaacaa
acaaacaaaataacaaaaaaattaaatgttaaccgtgtatatcctttcat
ttgggtaattctacctccaggaaatcatattgaagaaataatcctagcca
aaataatttctgttcagagatggttaatatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69207564_69208645
seq2: B6Ng01-308J08.b_44_1130 (reverse)

seq1  ACTGTTCTTCTGAA-GGTCCTGAGTTCA-ATTCCCAGCAACCACATGGT-  47
      |||||||||||||| |||| |||  ||| || || ||| | |||||||| 
seq2  ACTGTTCTTCTGAAGGGTCATGAAGTCATATACCAAGC-ATCACATGGTG  49

seq1  GGCTCAC-AACCATCCCTAAC-AAGATCTGGC-GTCCT--CTTCTGGAGT  92
      ||||||| |||||  |||| | ||||||| || |||||   || ||||||
seq2  GGCTCACAAACCAATCCTACCAAAGATCTAGCGGTCCTTCTTTTTGGAGT  99

seq1  -GTCTGAAGACAGCTACAGT-GTACTTACATATAATAAATAAATAAATCT  140
       || ||| |||||||||||| |||||||||||| |  ||| |||||||||
seq2  GGTTTGAGGACAGCTACAGTGGTACTTACATATTAAGAATTAATAAATCT  149

seq1  TAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAGAATCAGTCACCAGAAAT  190
      |    |||||||||||||||||||||||||||||||||||||||||||||
seq2  T----AAAAAAAAAAAAAAAAAAAAAAGAAGAGAATCAGTCACCAGAAAT  195

seq1  GACAGAGCTTGAATCAGAGTGCCTCCATTACCAGATAGCACTCTTCAGGC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCTTGAATCAGAGTGCCTCCATTACCAGATAGCACTCTTCAGGC  245

seq1  ATCCCACAGTCCCAGGTAAGGAAAGTTGATGCTACAGCATACTATAAAGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAGTCCCAGGTAAGGAAAGTTGATGCTACAGCATACTATAAAGA  295

seq1  CACCAAGTCCTATCACTTCTAACAAATAAATGACTCAATAGAGTCAAAGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTCCTATCACTTCTAACAAATAAATGACTCAATAGAGTCAAAGC  345

seq1  TGGTGTCTCTCATTTACAATGGGTCCATAACAGCATATAAACCCTTCCAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTCTCATTTACAATGGGTCCATAACAGCATATAAACCCTTCCAA  395

seq1  GGACCACCACCAAGATGCTGGCCTAGAGCTATGAAGGAGACTGAGGGAGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACCACCAAGATGCTGGCCTAGAGCTATGAAGGAGACTGAGGGAGC  445

seq1  TGTAATACAAACATACTTCTGGAATTTCCAACTCTGGGTACCAGGACCAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATACAAACATACTTCTGGAATTTCCAACTCTGGGTACCAGGACCAT  495

seq1  CTGCTTTCCTCTGTCGTGTTAACTCCCAGAAATGATTTCTGGTTCCTCTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCCTCTGTCGTGTTAACTCCCAGAAATGATTTCTGGTTCCTCTA  545

seq1  GTACGTCCCCAGGCGCCAGAGCTCACCTGCAGTGTGTGCTCCTGCGTTGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTCCCCAGGCGCCAGAGCTCACCTGCAGTGTGTGCTCCTGCGTTGC  595

seq1  AAGAGTGTTAATAATACGGATGTTCCGGGTCCGAGCAGACAGTCGTCCCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTTAATAATACGGATGTTCCGGGTCCGAGCAGACAGTCGTCCCA  645

seq1  CCTGGTAATTTGCCCCCTTCCACCAGGGTACTCCGAAATCATTGGCCCAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAATTTGCCCCCTTCCACCAGGGTACTCCGAAATCATTGGCCCAA  695

seq1  TCTGAACGGGGCAGTGGCGGCGGGATATGTACGAAGCGGCCCCGCGGGGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACGGGGCAGTGGCGGCGGGATATGTACGAAGCGGCCCCGCGGGGT  745

seq1  ACGGTATCTCATGCAACCAGTGAGTGGATCTATATGCTTGCGAATCTTCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTATCTCATGCAACCAGTGAGTGGATCTATATGCTTGCGAATCTTCA  795

seq1  AAAGCAAGGATTTGGAGAGACGGATCGGAGCAATCACTATTTCGAGTTCG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGGATTTGGAGAGACGGATCGGAGCAATCACTATTTCGAGTTCG  845

seq1  AGTTATTCCCCGCCATCCCTCCTCTGCTCTCCAGTGCCGCTTCCACCGAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCCCCGCCATCCCTCCTCTGCTCTCCAGTGCCGCTTCCACCGAC  895

seq1  CCCATACCAGCAGAACTTACGTCTCTAGTCTGTGGATCAAACCAGTGACT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACCAGCAGAACTTACGTCTCTAGTCTGTGGATCAAACCAGTGACT  945

seq1  TATGTCCTGGCCTGCGACCTCCAGGATGGGTTTCAACAGTAGGTCCCCTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCTGGCCTGCGACCTCCAGGATGGGTTTCAACAGTAGGTCCCCTA  995

seq1  AAAAGAAACAGAGGCCGTCAATGGCCGGCCACCCAAGGGCCAGAACCAGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACAGAGGCCGTCAATGGCCGGCCACCCAAGGGCCAGAACCAGC  1045

seq1  TCTCCAGCCCTTCCCTACCGTGTGTCCCTTACCTTTGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCCTTCCCTACCGTGTGTCCCTTACCTTTGAATTC  1087

seq1: chr11_69087324_69088053
seq2: B6Ng01-308J08.g_67_798

seq1  GAATTCCTAGAGCTCATTGCTAGCCAGTCCAGTTCACTGAGTTCCAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAGCTCATTGCTAGCCAGTCCAGTTCACTGAGTTCCAGGTT  50

seq1  CAGTGAAAAACCTCTGCCTCAAAAAAAAAAGAAAAAGAAAAACGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAAAACCTCTGCCTCAAAAAAAAAAGAAAAAGAAAAACGAAAGGA  100

seq1  AGGGAGGGAGGAAGAGAGAGAGAGGAGAGAGAGAGAGAAAAAAAAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAGGAAGAGAGAGAGAGGAGAGAGAGAGAGAAAAAAAAGCTGG  150

seq1  GTGGTTAGATCTCTAACTTCGAGGCCAGCCTGCTCTACAAAGTGAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAGATCTCTAACTTCGAGGCCAGCCTGCTCTACAAAGTGAGTTTC  200

seq1  AGGACAGCTAGGGCTACACAGAGAAACCTTGTCTCAAAAACTAAAACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCTAGGGCTACACAGAGAAACCTTGTCTCAAAAACTAAAACAAC  250

seq1  AACAACAATAAATATAATAATGATGAGATGCAGTGCAGTGGAAGAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATAAATATAATAATGATGAGATGCAGTGCAGTGGAAGAAGACA  300

seq1  CCTCACATCAGCCCACACAGCAGGTAAGTACATACCTGCATATAAACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATCAGCCCACACAGCAGGTAAGTACATACCTGCATATAAACATA  350

seq1  CATACCACTCAGTCAAAAATACACTTTCAAAAAGCAAAACTGAAAAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCACTCAGTCAAAAATACACTTTCAAAAAGCAAAACTGAAAAAGAT  400

seq1  TTGTATGTACTTCATGGAACTTATTTGTAATAAAATTAAAAATTTAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTACTTCATGGAACTTATTTGTAATAAAATTAAAAATTTAAATG  450

seq1  TTGAGCCAGGCGTGGTGGCGCACACTTTTAATCCCAGCACTCGGGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAGGCGTGGTGGCGCACACTTTTAATCCCAGCACTCGGGAGGCA  500

seq1  GAGGCAGGCGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGTGAGT  550

seq1  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAACAAACAA  600
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAACTAACAA  600

seq1  ACAAACAAAAAAACAAAAAAATTAAATGTTAACCGTGTATATCCTTTCA-  649
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  ACAAACAAAATAACAAAAAAATTAAATGTTAACCGTGTATATCCTTTCAT  650

seq1  TTGGGTAATTCTACCTCCAGGAAATCATATTGAAGAAATAATCCTAGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAATTCTACCTCCAGGAAATCATATTGAAGAAATAATCCTAGCCA  700

seq1  AAATAA-TTCTGTCCAGAGATGGTTAATATGG  730
      |||||| |||||| ||||||||||||||||||
seq2  AAATAATTTCTGTTCAGAGATGGTTAATATGG  732