BAC Information

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BAC

Clone NameB6Ng01-308J21
Chromosome11 (Build37)
Map Location 105,044,112 - 105,045,227
singlet/doubletsinglet
Overlap geneTlk2
Upstream gene4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, 1700052K11Rik
Downstream geneMrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308J21.b
ACCGA101070
length1,120
definitionB6Ng01-308J21.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tcaccttttcattcccctttgctccaggcattcagtccaggaagggaaat
gaaagttaggacgggtgtaggggatgttactggaaattatggagctgtta
gattgcagagaaggtttgattcctttttcagtgaactttaatacaaattt
ctgccaatcactccaggagtgcctccagtaactctggaatactagaatgt
ttgaagggttcctatgttatgatgcatgctctttttctattctcaatatt
gaagaactttttaatggatgatgcaagagtactttctcccatcggatgga
caaacttgctcatagcatctacattaattggtcaggaaaagagtttaaaa
atggtgccctcctgctcctccctgtttgggaggagtgcaagcaggtaccc
agagtggagaggaaactactgttccatggagtggtcagaaaaagattttg
taaaggaattgttacagttacatcaatttcctgagtgaatgtaggttgat
ggtttatgttgggttctacattacatttaccatgaaagaattccattttt
cactagctactgtgagctattcagagaaaggagctatatacagtagggct
tcttgacgttatttgcagcttctgattcactctggattcacttgaaatta
ttaaatgactcatatttttagcttaactagttcttatgtgtttgggaaag
aaatctctagaagtacttagattgaaaggtatctgacaggagttttctat
ttgtaagtttgcccttgttctacccttctgcttaacttttacagagttta
tatgaagagtttctttcttttttttttttaaagatttatttatttattta
tatgtaagtacactgtagctgtcttcagacactccagaagagggagtgtc
agatcttgttacagatgggttggtgaaccaccatgtggttgctggggatt
tgaactctggaccttcgagagcagtctgtgctcttacccactgagcatct
tcaccagcccctttaattctttttaattacattttttggtaatttttttt
tttaaattaggtagccctagggcggtctgagtttgactggtgatgtaacc
aagcttgcccttaaacttgt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105044112_105045227
seq2: B6Ng01-308J21.b_55_1174

seq1  TCACCTTTTCATTCCCCTTTGCTCCAGGCATTCAGTCCAGGAAGGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTTCATTCCCCTTTGCTCCAGGCATTCAGTCCAGGAAGGGAAAT  50

seq1  GAAAGTTAGGACGGGTGTAGGGGATGTTACTGGAAATTATGGAGCTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTAGGACGGGTGTAGGGGATGTTACTGGAAATTATGGAGCTGTTA  100

seq1  GATTGCAGAGAAGGTTTGATTCCTTTTTCAGTGAACTTTAATACAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAGAGAAGGTTTGATTCCTTTTTCAGTGAACTTTAATACAAATTT  150

seq1  CTGCCAATCACTCCAGGAGTGCCTCCAGTAACTCTGGAATACTAGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAATCACTCCAGGAGTGCCTCCAGTAACTCTGGAATACTAGAATGT  200

seq1  TTGAAGGGTTCCTATGTTATGATGCATGCTCTTTTTCTATTCTCAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGTTCCTATGTTATGATGCATGCTCTTTTTCTATTCTCAATATT  250

seq1  GAAGAACTTTTTAATGGATGATGCAAGAGTACTTTCTCCCATCGGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTTTTTAATGGATGATGCAAGAGTACTTTCTCCCATCGGATGGA  300

seq1  CAAACTTGCTCATAGCATCTACATTAATTGGTCAGGAAAAGAGTTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGCTCATAGCATCTACATTAATTGGTCAGGAAAAGAGTTTAAAA  350

seq1  ATGGTGCCCTCCTGCTCCTCCCTGTTTGGGAGGAGTGCAAGCAGGTACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCCTCCTGCTCCTCCCTGTTTGGGAGGAGTGCAAGCAGGTACCC  400

seq1  AGAGTGGAGAGGAAACTACTGTTCCATGGAGTGGTCAGAAAAAGATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAGAGGAAACTACTGTTCCATGGAGTGGTCAGAAAAAGATTTTG  450

seq1  TAAAGGAATTGTTACAGTTACATCAATTTCCTGAGTGAATGTAGGTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAATTGTTACAGTTACATCAATTTCCTGAGTGAATGTAGGTTGAT  500

seq1  GGTTTATGTTGGGTTCTACATTACATTTACCATGAAAGAATTCCATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGTTGGGTTCTACATTACATTTACCATGAAAGAATTCCATTTTT  550

seq1  CACTAGCTACTGTGAGCTATTCAGAGAAAGGAGCTATATACAGTAGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCTACTGTGAGCTATTCAGAGAAAGGAGCTATATACAGTAGGGCT  600

seq1  TCTTGACGTTATTTGCAGCTTCTGATTCACTCTGGATTCACTTGAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACGTTATTTGCAGCTTCTGATTCACTCTGGATTCACTTGAAATTA  650

seq1  TTAAATGACTCATATTTTTAGCTTAACTAGTTCTTATGTGTTTGGGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGACTCATATTTTTAGCTTAACTAGTTCTTATGTGTTTGGGAAAG  700

seq1  AAATCTCTAGAAGTACTTAGATTGAAAGGTATCTGACAGGAGTTTTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTAGAAGTACTTAGATTGAAAGGTATCTGACAGGAGTTTTCTAT  750

seq1  TTGTAAGTTTGCCCTTGTTCTACCCTTCTGCTTAACTTTTACAGAGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTTTGCCCTTGTTCTACCCTTCTGCTTAACTTTTACAGAGTTTA  800

seq1  TATGAAGAGTTTCTTTC-TTTTTTTTTTTAAAGATTTATTTATTTA-TTA  848
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  TATGAAGAGTTTCTTTCTTTTTTTTTTTTAAAGATTTATTTATTTATTTA  850

seq1  TATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTGTC  900

seq1  AGATCTTGTTACAGATGG--TTGTGAACCACCATGTGGTTGCT-GGGATT  945
      ||||||||||||||||||  | ||||||||||||||||||||| ||||||
seq2  AGATCTTGTTACAGATGGGTTGGTGAACCACCATGTGGTTGCTGGGGATT  950

seq1  TGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCC  995
      |||||||||||||||||  |||||||||  |||||||||||||||||| |
seq2  TGAACTCTGGACCTTCG--AGAGCAGTC-TGTGCTCTTACCCACTGAG-C  996

seq1  ATC-TCACCAGCCCCTTTATTTCTTTTTATTTACTTTTTTTTGTAATTTT  1044
      ||| ||||||||||||||| ||||||||| |||| |||||| ||||||||
seq2  ATCTTCACCAGCCCCTTTAATTCTTTTTAATTACATTTTTTGGTAATTTT  1046

seq1  TTTTTTTAAATTTATGTAGCCCTA-GGTGGTCTTGAGTTTG-CT-GTG-T  1090
      |||||||||| ||| ||||||||| || |||| |||||||| || ||| |
seq2  TTTTTTTAAA-TTAGGTAGCCCTAGGGCGGTC-TGAGTTTGACTGGTGAT  1094

seq1  GTAGACCAGGC-TGCCCTTAAATTTGT  1116
      ||| |||| || |||||||||| ||||
seq2  GTA-ACCAAGCTTGCCCTTAAACTTGT  1120