BAC Information

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BAC

Clone NameB6Ng01-309B24
Chromosome11 (Build37)
Map Location 9,118,202 - 9,119,349
singlet/doubletsinglet
Overlap geneAbca13
Upstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309B24.bB6Ng01-309B24.g
ACCGA101444GA101445
length1,1801,151
definitionB6Ng01-309B24.b B6Ng01-309B24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcctatacctaaacataataaaagcaatatacagcaaacca
gtagccaacatcaaaataaatggagagtagctggaatcaatcccactaaa
atgagggactagacaaggctgccaactttcttcctacctattcaatatag
tcttgaagtcctagcctgagcaattagacaacagaaggagatcaagggga
tacaaactggaaaggaagaagtcagaatattactatttgcaaatgatatg
atagtatatataagtgactctaaaaattccaccagagaactcctaaacct
aataaacagcttcagtgaagtagctagatataacattaactcaaacaaat
caatggcctttctctacacaaaggataaacatgttaagaaagaaattagg
gaaacaacaccattcacaatagtcacaaataatataaaataccttggtgt
gactataactagggaaatgaaagaacttcaagtctctaatgaaagaaatg
gaagaagatcacagaagatggaaagatctcccatgctcatggattggcag
aattaatatagtaaaaatggctatcttgccaaaagcaatctatagattca
atgaaatccccatcaaaattccaactcaattctttactgagttagaaagg
gcaacttggaaattcatctggaaaaaaacaaaaaacctaggatagcaaaa
actcttctcaatgataaaagaacctctgttggaatcaccatgcctgacct
caagctgtactacagagcaattatggaaaaactgcacggtactggtacaa
caacagacaagtagatcaattgaatagaactgaagacccagaaatgaacc
cacacacttatggtcacttcatctttgacaaaggaactaaaaccatccag
tggaaaaaagacagcattttcaacaaatagtgctggctcaacttggtagt
atcatgtagaagaatgcaaaatgatccatcttatctcctgtatataactc
aagtctaagtgtatcagactcatataaaacagagaacactaaaactatag
agagaaagtgggggaagctggaagatatgggcacagggaaaaatcctgac
ctgaacaacatgcttgtgtcctgtagatcgaatcacactggaacttcata
atgacaaagcccttccggttaagagcacag

gaattcttggcatagtggatcttcaaattcagatgaaggagatcatttcc
cagactcaaagtaataggagaaagctgttccctggatattatgaatgatc
gatgagccacagcacatcagtcaggagcttccctgtcactgtcattatct
ccatgcacttgtgcaaagaaagggccgatagggttggggtatgttttacc
agcactttattgattaagatgttggctcattataggactatttttctgaa
agacttcccttgcttctttcctctctccctccctttcccccctcctcccc
tcccctctctctatcttccttccttccttccttgtttccctttctgccct
ccctccatgcctccctcctcttcttcaccttagttgtcttcttttccttc
tcctccttctccttcactttcttctttttcttctgagacttggtctcttt
gtgtagccttggctgccctgaagctcactatgtagatcaggatgacctca
cattccagagatctgcctgcttctgcttccccagtgcaggattaaaggtg
tggaccaccatgccagattcctgaaaagttttgatattattcaataaagt
gtttttgttctatatgatgtttagaaatttcatgtaaatgtttaatagta
caagctggattctgtctgaaagcttttacctaaacttaaaagtattcatt
ttatttttcctactcatggttgatttgtagagggctgtgccaagaggctt
ggctatataacagaagagtgactactacctgatggggaaagatggttaaa
tacagcaagagttgtatcatttgccagggagggtgtgcaaagtataaaag
ggttttatatttcctgagtaattcctcagatatcttttaagtttatgaca
tgggcaataaataacatacattatggagtgtagatttttagacagatatt
ctgttgtgtctttgcatggcttgggtcctgtaactgtgagtagaggcagc
aggggtgaagaaatggtacaccacagatgcagccaaatttggaatggtag
ttctgggaggagctgtatcactcctcaaagtgccagcatttggttatatt
tgcagtttgaactgatgaagttactgccatacagctctgatcagcaggca
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9118202_9119349
seq2: B6Ng01-309B24.g_66_1216

seq1  GAATTCTTGGCATAGTGGATCTTCAAATTCAGATGAAGGAGATCATTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCATAGTGGATCTTCAAATTCAGATGAAGGAGATCATTTCC  50

seq1  CAGACTCAAAGTAATAGGAGAAAGCTGTTCCCTGGATATTATGAATGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAAAGTAATAGGAGAAAGCTGTTCCCTGGATATTATGAATGATC  100

seq1  GATGAGCCACAGCACATCAGTCAGGAGCTTCCCTGTCACTGTCATTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCCACAGCACATCAGTCAGGAGCTTCCCTGTCACTGTCATTATCT  150

seq1  CCATGCACTTGTGCAAAGAAAGGGCCGATAGGGTTGGGGTATGTTTTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACTTGTGCAAAGAAAGGGCCGATAGGGTTGGGGTATGTTTTACC  200

seq1  AGCACTTTATTGATTAAGATGTTGGCTCATTATAGGACTATTTTTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTATTGATTAAGATGTTGGCTCATTATAGGACTATTTTTCTGAA  250

seq1  AGACTTCCCTTGCTTCTTTCCTCTCTCCCTCCCTTTCCCCCCTCCTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCCTTGCTTCTTTCCTCTCTCCCTCCCTTTCCCCCCTCCTCCCC  300

seq1  TCCCCTCTCTCTATCTTCCTTCCTTCCTTCCTTGTTTCCCTTTCTGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTCTCTATCTTCCTTCCTTCCTTCCTTGTTTCCCTTTCTGCCCT  350

seq1  CCCTCCATGCCTCCCTCCTCTTCTTCACCTTAGTTGTCTTCTTTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATGCCTCCCTCCTCTTCTTCACCTTAGTTGTCTTCTTTTCCTTC  400

seq1  TCCTCCTTCTCCTTCACTTTCTTCTTTTTCTTCTGAGACTTGGTCTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCTCCTTCACTTTCTTCTTTTTCTTCTGAGACTTGGTCTCTTT  450

seq1  GTGTAGCCTTGGCTGCCCTGAAGCTCACTATGTAGATCAGGATGACCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCTTGGCTGCCCTGAAGCTCACTATGTAGATCAGGATGACCTCA  500

seq1  CATTCCAGAGATCTGCCTGCTTCTGCTTCCCCAGTGCAGGATTAAAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGAGATCTGCCTGCTTCTGCTTCCCCAGTGCAGGATTAAAGGTG  550

seq1  TGGACCACCATGCCAGATTCCTGAAAAGTTTTGATATTATTCAATAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCACCATGCCAGATTCCTGAAAAGTTTTGATATTATTCAATAAAGT  600

seq1  GTTTTTGTTCTATATGATGTTTAGAAATTTCATGTAAATGTTTAATAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTCTATATGATGTTTAGAAATTTCATGTAAATGTTTAATAGTA  650

seq1  CAAGCTGGATTCTGTCTGAAAGCTTTTACCTAAACTTAAAAGTATTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGATTCTGTCTGAAAGCTTTTACCTAAACTTAAAAGTATTCATT  700

seq1  TTATTTTTCCTACTCATGGTTGATTTGTAGAGGGCTGTGCCAAGAGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCCTACTCATGGTTGATTTGTAGAGGGCTGTGCCAAGAGGCTT  750

seq1  GGCTATATAACAGAAGAGTGACTACTACCTGATGGGGAAAGATGGTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATAACAGAAGAGTGACTACTACCTGATGGGGAAAGATGGTTAAA  800

seq1  TACAGCAAGAGTTGTATCATTTGCCAGGGAGGGTGTGCAAAGTATAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAAGAGTTGTATCATTTGCCAGGGAGGGTGTGCAAAGTATAAAAG  850

seq1  GGTTTTATATTTCCTGAGTAATTCCTCAGATATCTTTTAAGTTAATGACA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTTTTATATTTCCTGAGTAATTCCTCAGATATCTTTTAAGTTTATGACA  900

seq1  TGGCAAATAAATAACATAACATTATGGAGTGTAGATTTTTAGAACAGATA  950
      |||  |||||||||||| |||||||||||||||||||||||| |||||||
seq2  TGGGCAATAAATAACAT-ACATTATGGAGTGTAGATTTTTAG-ACAGATA  948

seq1  TTCTGTTGTGTCTTTGCATGGCTTGGGTCCTGTAACTGTGAGTAGAGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGTGTCTTTGCATGGCTTGGGTCCTGTAACTGTGAGTAGAGGCA  998

seq1  GCAAGGGGTGAAGAAATGTTACA-CACAGATGCAG-CAAATTTGGAATTG  1048
      || ||||||||||||||| |||| ||||||||||| ||||||||||||  
seq2  GC-AGGGGTGAAGAAATGGTACACCACAGATGCAGCCAAATTTGGAAT--  1045

seq1  GGTAG-TCTGGGAGAAGCTGTATCACT-CTCAAAGTG-CAGCATTTTGTT  1095
      ||||| |||||||| |||||||||||| ||||||||| |||||||| |||
seq2  GGTAGTTCTGGGAGGAGCTGTATCACTCCTCAAAGTGCCAGCATTTGGTT  1095

seq1  ATA--TGCAG-TTGAACAGGGATGAAGTTTACTG-CATACAG--CTGATC  1139
      |||  ||||| ||||||   ||||||| |||||| |||||||  ||||||
seq2  ATATTTGCAGTTTGAAC--TGATGAAG-TTACTGCCATACAGCTCTGATC  1142

seq1  AGCAGGCAG  1148
      |||||||||
seq2  AGCAGGCAG  1151


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