BAC Information

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BAC

Clone NameB6Ng01-309I02
Chromosome11 (Build37)
Map Location 115,802,553 - 115,960,378
singlet/doubletdoublet
Overlap geneSap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2
Upstream geneCd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik
Downstream geneTrim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309I02.bB6Ng01-309I02.g
ACCGA101731GA101732
length9131,015
definitionB6Ng01-309I02.b B6Ng01-309I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,802,553 - 115,803,459)(115,959,363 - 115,960,378)
sequence
gaattctcttgctgctgttagcaagctaacatagtgcacacacctttaat
ctcagtgctccggagacagaggcagtggaccttaatgagcttaagccagc
ctgctctatggaacaagtttcaaggttacattgtgagagcttgtctccaa
aaaaccaaagtaaaagaaacaaaaaaggctgaggcccactcctttaatcc
cagcacttgggaggcagaggcaggcagatttctgagtttgaggccagctt
ggtctacagagtgagttccaggacagccagggctacacagagaaaccctg
tctcgaaaaaacaaaaaaccaaaaaggtgccaagactagaaatggcattt
ttgattgtcttgctactttctttatgttttaaacctttgttattattgtg
tgtgtgtgtgtagctgtggaggcagggcatgtgtgtgcatgtgcacatgc
agaggccacagaacactctggaaccacttctctcctctgcatatgttctg
gggttgagtgcaggtcgtgggctggtacagcaagtgtctctgcccacgac
cgatctccttgcttctgttactttgctctatgaaacagggtctcactgta
gcacaggctggcctcagtctgcccaccctcctgcctcagcctttggagca
ctgggacctaattttgccactctgacacctggagtagctcctgggtgcag
tctcctgcactgaagttgaatgagacgctaactcccagatccaccctgta
tggaagcgttcaatctgagatagaaaggcccgagttacaaatcagagaag
gggaggcaacttggttttgccaagagaaatctaaacacctgcgtgctttc
taaccatgcttgctttctcttggccttctatcttcacttcagtaagcagt
ctgggccttatgt
gaattccaacattcgctttgctcttctgggtttgggagtggtgcctgctg
tccggtttttctatttcagttaccaaaacagcccaggctggcctccatct
cagaatcctcctgcgtttccctctcaagccatgggattagaggtgcgtgt
catcacccatgaccagctcctagttaattatttatacacatttgccctgt
tcacatagctagtgagaagctaggtgttacaaatgtcaaatcccagcact
gactctcctccacacagatcctttgactcactccaaatcacatctcaggg
tcacacatcccggccccccggcaaacacgccactatgtaggagcaagata
gggggctgaagcactagtgagcctcctaaaaccctctcctgaagtgttgt
aaagttcttctcttccccctgaacctagccatgctgcctcttcagtctaa
gttataagtacacccaacggcccttggctccccaacaaaagcctggccgt
atacctgctgagtttacagcagtgctaaaccagaaacccatgagccagct
ggagagaaggaaggcttagtggttaagagcactggctgctctttcagagg
acgcaggttcaattcctagtacccacgtggtagctcacgattgtctctaa
ctccagttccagaggatccaacaccctaacaatgacatacatacagacaa
agcactgatgtatatgagataaaaatacatttcaatgtcgggcagtggtg
gcgcacgcctttaataccagcacttgggaggcagaagcagcagatttctg
agttcgaggccagccaggtctacagtgtctccaggacagccagagctata
cagagaaaccctgtctcgaaaaccaaaacaccacaacaacaacaatatat
atgtgtgtctgtgtgtgtgtgtattaaagaaagaaaaagaaaatccttga
gctgaaagggcatatacctatgagacagagtaaggtaggagtttgagatt
gaccctaagctacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115802553_115803459
seq2: B6Ng01-309I02.b_46_958

seq1  GAATTCTCTTGCTGCTGTTAGCAAGCTAACATAGTGCACACACCTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGCTGCTGTTAGCAAGCTAACATAGTGCACACACCTTTAAT  50

seq1  CTCAGTGCTCCGGAGACAGAGGCAGTGGACCTTAATGAGCTTAAGCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCTCCGGAGACAGAGGCAGTGGACCTTAATGAGCTTAAGCCAGC  100

seq1  CTGCTCTATGGAACAAGTTTCAAGGTTACATTGTGAGAGCTTGTCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTATGGAACAAGTTTCAAGGTTACATTGTGAGAGCTTGTCTCCAA  150

seq1  AAAACCAAAGTAAAAGAAACAAAAAAGGCTGAGGCCCACTCCTTTAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAGTAAAAGAAACAAAAAAGGCTGAGGCCCACTCCTTTAATCC  200

seq1  CAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCTT  250

seq1  GGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG  300

seq1  TCTCGAAAAAACAAAAAACCAAAAAGGTGCCAAGACTAGAAATGGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAAAAAACAAAAAACCAAAAAGGTGCCAAGACTAGAAATGGCATTT  350

seq1  TTGATTGTCTTGCTACTTTCTTTATGTTTTAAACCTTTGTTATTATTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTCTTGCTACTTTCTTTATGTTTTAAACCTTTGTTATTATTGTG  400

seq1  TGTGTGTGTGTAGCTGTGGAGGCAGGGCATGTGTGTGCATGTGCACATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTAGCTGTGGAGGCAGGGCATGTGTGTGCATGTGCACATGC  450

seq1  AGAGGCCACAGAACACTCTGGAACCACTTCTCTCCTCTGCATATGTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCACAGAACACTCTGGAACCACTTCTCTCCTCTGCATATGTTCTG  500

seq1  GGGTTGAGTGCAGGTCGTGGGCTGGTACAGCAAGTGTCTCTGCCCACGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGTGCAGGTCGTGGGCTGGTACAGCAAGTGTCTCTGCCCACGAC  550

seq1  CGATCTCCTTGCTTCTGTTACTTTGCTCTATGAAACAGGGTCTCACTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTCCTTGCTTCTGTTACTTTGCTCTATGAAACAGGGTCTCACTGTA  600

seq1  GCACAGGCTGGCCTCAGTCTGCCCACCCTCCTGCCTCAGCCTTTGGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCTGGCCTCAGTCTGCCCACCCTCCTGCCTCAGCCTTTGGAGCA  650

seq1  CTGGGACCTAATTTTGCCACTCTGACACCTGGAGTAGCTCCTGGGTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACCTAATTTTGCCACTCTGACACCTGGAGTAGCTCCTGGGTGCAG  700

seq1  TCTCCTGCACTGAAGTTGAATGAGACGCTAACT-CCAGATCCA-CCTGTA  748
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TCTCCTGCACTGAAGTTGAATGAGACGCTAACTCCCAGATCCACCCTGTA  750

seq1  TGGAAGCGTTCAGTCTGAGATAGAAAGGCCCGAGTTACAAATCAGAGAAG  798
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCGTTCAATCTGAGATAGAAAGGCCCGAGTTACAAATCAGAGAAG  800

seq1  GGGAGGCAACTTGG-TATGCCAAGAG-AATCTAAACACCTGCGTGC-TTC  845
      |||||||||||||| | ||||||||| ||||||||||||||||||| |||
seq2  GGGAGGCAACTTGGTTTTGCCAAGAGAAATCTAAACACCTGCGTGCTTTC  850

seq1  TAACCCATGCTTGCTTTCTCTTGG-CGTCTAGTCTCACCTCAGTAAGCAG  894
      ||| |||||||||||||||||||| | ||||   |||| |||||||||||
seq2  TAA-CCATGCTTGCTTTCTCTTGGCCTTCTATCTTCACTTCAGTAAGCAG  899

seq1  TCT-GGCCTTATGT  907
      ||| ||||||||||
seq2  TCTGGGCCTTATGT  913

seq1: chr11_115959363_115960378
seq2: B6Ng01-309I02.g_67_1081 (reverse)

seq1  GTGTAACTTA-GGTCAATCTCAAACTCCTACCCTTCTCTGTCTCCTTGGT  49
      ||||| |||| ||||||||||||||||||||| | ||||||||| | |||
seq2  GTGTAGCTTAGGGTCAATCTCAAACTCCTACCTTACTCTGTCTCATAGGT  50

seq1  ATATGCCC-TTCAGCTCAGGGATTTTCTTTTTCTTTCTTTAATACACACA  98
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  ATATGCCCTTTCAGCTCAAGGATTTTCTTTTTCTTTCTTTAATACACACA  100

seq1  CACACAGACACACATATATATTGTTGTTGTTGTTGTTGTTTTGGTTTTTC  148
      |||||||||||||||||||||||||||||||| || |||||||| |||||
seq2  CACACAGACACACATATATATTGTTGTTGTTG-TGGTGTTTTGG-TTTTC  148

seq1  GAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAGACACTGTAGAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAGACACTGTAGAC  198

seq1  CTGGCTGGCCTCGAACTCAGAAATCTGCCTGCTTCTGCCTCCCAAGTGCT  248
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGGCTGGCCTCGAACTCAGAAATCTG-CTGCTTCTGCCTCCCAAGTGCT  247

seq1  GGTATTAAAGGCGTGCGCCACCACTGCCCGACATTGAAATGTATTTTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAAAGGCGTGCGCCACCACTGCCCGACATTGAAATGTATTTTTAT  297

seq1  CTCATATACATCAGTGCTTTGTCTGTATGTATGTCATTGTTAGGGTGTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATACATCAGTGCTTTGTCTGTATGTATGTCATTGTTAGGGTGTTG  347

seq1  GATCCTCTGGAACTGGAGTTAGAGACAATCGTGAGCTACCACGTGGGTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTGGAACTGGAGTTAGAGACAATCGTGAGCTACCACGTGGGTAC  397

seq1  TAGGAATTGAACCTGCGTCCTCTGAAAGAGCAGCCAGTGCTCTTAACCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTGAACCTGCGTCCTCTGAAAGAGCAGCCAGTGCTCTTAACCAC  447

seq1  TAAGCCTTCCTTCTCTCCAGCTGGCTCATGGGTTTCTGGTTTAGCACTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTCCTTCTCTCCAGCTGGCTCATGGGTTTCTGGTTTAGCACTGC  497

seq1  TGTAAACTCAGCAGGTATACGGCCAGGCTTTTGTTGGGGAGCCAAGGGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTCAGCAGGTATACGGCCAGGCTTTTGTTGGGGAGCCAAGGGCC  547

seq1  GTTGGGTGTACTTATAACTTAGACTGAAGAGGCAGCATGGCTAGGTTCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTGTACTTATAACTTAGACTGAAGAGGCAGCATGGCTAGGTTCAG  597

seq1  GGGGAAGAGAAGAACTTTACAACACTTCAGGAGAGGGTTTTAGGAGGCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAGAAGAACTTTACAACACTTCAGGAGAGGGTTTTAGGAGGCTC  647

seq1  ACTAGTGCTTCAGCCCCCTATCTTGCTCCTACATAGTGGCGTGTTTGCCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGCTTCAGCCCCCTATCTTGCTCCTACATAGTGGCGTGTTTGCCG  697

seq1  GGGGGCCGGGATGTGTGACCCTGAGATGTGATTTGGAGTGAGTCAAAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCGGGATGTGTGACCCTGAGATGTGATTTGGAGTGAGTCAAAGGA  747

seq1  TCTGTGTGGAGGAGAGTCAGTGCTGGGATTTGACATTTGTAACACCTAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGAGGAGAGTCAGTGCTGGGATTTGACATTTGTAACACCTAGC  797

seq1  TTCTCACTAGCTATGTGAACAGGGCAAATGTGTATAAATAATTAACTAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTAGCTATGTGAACAGGGCAAATGTGTATAAATAATTAACTAGG  847

seq1  AGCTGGTCATGGGTGATGACACGCACCTCTAATCCCATGGCTTGAGAGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCATGGGTGATGACACGCACCTCTAATCCCATGGCTTGAGAGGG  897

seq1  AAACGCAGGAGGATTCTGAGATGGAGGCCAGCCTGGGCTGTTTTGGTAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAGGAGGATTCTGAGATGGAGGCCAGCCTGGGCTGTTTTGGTAAC  947

seq1  TGAAATAGAAAAACCGGACAGCAGGCACCACTCCCAAACCCAGAAGAGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGAAAAACCGGACAGCAGGCACCACTCCCAAACCCAGAAGAGCA  997

seq1  AAGCGAATGTTGGAATTC  1016
      ||||||||||||||||||
seq2  AAGCGAATGTTGGAATTC  1015