BAC Information

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BAC

Clone NameB6Ng01-309K19
Chromosome11 (Build37)
Map Location 94,771,307 - 94,893,822
singlet/doubletdoublet
Overlap geneCol1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2
Upstream geneMbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739
Downstream geneItga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309K19.bB6Ng01-309K19.g
ACCGA101856GA101857
length1,1291,099
definitionB6Ng01-309K19.b B6Ng01-309K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,892,684 - 94,893,822)(94,771,307 - 94,772,416)
sequence
gaattcctggacaaagaccccgaggaccaccggactctaagccagtgagt
gagcaccctctttagggacaagaaggcaggtgcaggcaaggacatcttgg
tcagggccacaaggatggaatgccagctgggtacagggaaaggccctgcc
ttcagggatgtgccaagaaaggggggagacaggctacttctgggaaaacc
aggtctgctgcgagagacgagaatgctaattatcagtatagcaagaggat
gtgggggagccctgcccccagaacaaaccttcagagaaaccgagaacttt
agctgtaaacaggaagatggatggagagctgggacagtagtggtgggctt
ccagtgggtgagcttccgtgtgtctgtgggtctggggaggagaaaatgaa
ggaactgataggccattgggaataatggagagccagggtgtccccaaacc
tgagactgggtagaggcaagtgtctgccttctctgaaggttcacagatgc
cctggtcaccatccggaaccggcacaatgacgtggtgcccaccatggcac
agggagtgctggagtacaaggacacctatggagatgaccccgtctccaac
cagaacatccagtacttcctggaccgcttctacctcagccgcatctccat
ccgaatgctaatcaatcaacacagtgagtcctgcctggctgcttcggaga
gggcaaggggcccggcagggcacgccaagaagggcaccgcccccacaaga
aagcaggctccccacttcagcctctgggctcagaggcctgagtggcattt
gggaactgaagagtgtggcttaagtcatgtgtctataaccctagcacgtg
ggcagctgaggcaggaaaatagtatatgtttgaggcccaccctcaaaaaa
attaagtaatagaaaatttaaaagtaattggttcccaaagtaaagtaaaa
gtgcacactgagtgaaattctgttgttgtaatattgtaaatgtcaacatg
ctacgtgttctgaaaccatatataatatcatgcacatggtgccacatgtt
gtggggcagaggacatctcgtgcagtttaccgcctctcttcaccatctgg
gccttgggattgactcaagtgtcaggcta
gaattccaggccaatctgttctacttagcaagttcatggtgaaagaacga
ggagtggatgggaaatccagcaagatagcacagggtaaaagcacacattg
ccaagcctgagtacttgaactccttatctgggatctagaaggtgaaagaa
ctagctcgtgcaagatgtcatctgactagtgtgctgtggcatgtattaac
ctcccgtcccgaggtaaataaaaattaaaaaactgaaataagatccctga
aataagagtcttctcttttcttcctctctctctcttcctattttatttta
ttttattttattttattttattttatttttcctacctgtctccataccta
ggcaattcagcacagtggtaagagcagggtaggcactgtgactgtgctgg
tggtgagccacagtgtccagaacaagatgtccaaaaactggagagtaggg
gaagggtcagctgctgggagagcgaatgttgtgggcagcaatgacctagg
cagtttatcagtggcatggggaagggtgtccctgcagagacgtcatggca
tggaaagcatgcatgctttgggcaagcagtctaccactgcgatcctcatc
ccagcatgggtgctccgacagccacgagaccttattctcatgtcttagtt
ttctggtatcattttccaacaacaacaacaacaacaaaaaagaagcagaa
ctctgggtaactgacagacaggaggcaaagaatgtacctaataaactagt
gctattttgttccagagagtagggaactcctcaaagaataatgagtctgc
ctcagtcagcctgggctcctgtatgaagcatcacaatccgggcagctgaa
atggcaggcatttttttcctacactgcactagaggccacgggtcaagtgc
tgacgaagctgatctctctgcatcctctcccccatgtctctcctggtctg
cccattttccatcctctgagtgtgcctacctggtgtgtctcttcctctat
aaagctgtcagtcttattgataggctccacccttatgactcatttaccat
aacctcttgtggtgctttgaatagtagtgccatgggagtgcactgctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94892684_94893822
seq2: B6Ng01-309K19.b_47_1175 (reverse)

seq1  TAGCCTGACAACTTGAGTTCAATCCCCAAGGCCCAGATGATGAAAAGAGA  50
      ||||||||| ||||||| ||||| ||||||||||||||| |||| |||| 
seq2  TAGCCTGAC-ACTTGAG-TCAAT-CCCAAGGCCCAGATGGTGAAGAGAGG  47

seq1  GCGTAAACTGCA--GGATGTCCTCTG-CCCACAACATGT-GCA-CATGTG  95
        ||||||||||   ||||||||||| |||||||||||| ||| ||||||
seq2  CGGTAAACTGCACGAGATGTCCTCTGCCCCACAACATGTGGCACCATGTG  97

seq1  CATAAATAAATAAATATA-ATTGTTTCAGAACACGTAGCATGTTTGACAT  144
      ||| |       | |||| || |||||||||||||||||||| |||||||
seq2  CATGA------TATTATATATGGTTTCAGAACACGTAGCATG-TTGACAT  140

seq1  TTACAAATATTTACAACAACAGAATTTCACCTCAGTGTTGCACTTTTTAC  194
      |||| |||| ||||||||||||||||||| ||||||| ||||| ||||||
seq2  TTAC-AATA-TTACAACAACAGAATTTCA-CTCAGTG-TGCAC-TTTTAC  185

seq1  TTTACTTTGGGAACCAATTACTTTTTAAATTTTCTATTTACTTAATTTTT  244
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  TTTACTTTGGGAACCAATTAC-TTTTAAATTTTCTA-TTACTTAATTTTT  233

seq1  TTGA-GGTTGGCCTCAAACATATACTATTTTCCTGCCTCAGCTGCCCACG  293
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTGGGCCTCAAACATATACTATTTTCCTGCCTCAGCTGCCCACG  283

seq1  TGCTAGGGTTATAGACACATGACTTAAGCCACACTCTTCAGTTCCCAAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGGTTATAGACACATGACTTAAGCCACACTCTTCAGTTCCCAAAT  333

seq1  GCCACTCAGGCCTCTGAGCCCAGAGGCTGAAGTGGGGAGCCTGCTTTCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCAGGCCTCTGAGCCCAGAGGCTGAAGTGGGGAGCCTGCTTTCTT  383

seq1  GTGGGGGCGGTGCCCTTCTTGGCGTGCCCTGCCGGGCCCCTTGCCCTCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGCGGTGCCCTTCTTGGCGTGCCCTGCCGGGCCCCTTGCCCTCTC  433

seq1  CGAAGCAGCCAGGCAGGACTCACTGTGTTGATTGATTAGCATTCGGATGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCAGCCAGGCAGGACTCACTGTGTTGATTGATTAGCATTCGGATGG  483

seq1  AGATGCGGCTGAGGTAGAAGCGGTCCAGGAAGTACTGGATGTTCTGGTTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCGGCTGAGGTAGAAGCGGTCCAGGAAGTACTGGATGTTCTGGTTG  533

seq1  GAGACGGGGTCATCTCCATAGGTGTCCTTGTACTCCAGCACTCCCTGTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGGGTCATCTCCATAGGTGTCCTTGTACTCCAGCACTCCCTGTGC  583

seq1  CATGGTGGGCACCACGTCATTGTGCCGGTTCCGGATGGTGACCAGGGCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGGCACCACGTCATTGTGCCGGTTCCGGATGGTGACCAGGGCAT  633

seq1  CTGTGAACCTTCAGAGAAGGCAGACACTTGCCTCTACCCAGTCTCAGGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACCTTCAGAGAAGGCAGACACTTGCCTCTACCCAGTCTCAGGTT  683

seq1  TGGGGACACCCTGGCTCTCCATTATTCCCAATGGCCTATCAGTTCCTTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACACCCTGGCTCTCCATTATTCCCAATGGCCTATCAGTTCCTTCA  733

seq1  TTTTCTCCTCCCCAGACCCACAGACACACGGAAGCTCACCCACTGGAAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTCCCCAGACCCACAGACACACGGAAGCTCACCCACTGGAAGC  783

seq1  CCACCACTACTGTCCCAGCTCTCCATCCATCTTCCTGTTTACAGCTAAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTACTGTCCCAGCTCTCCATCCATCTTCCTGTTTACAGCTAAAG  833

seq1  TTCTCGGTTTCTCTGAAGGTTTGTTCTGGGGGCAGGGCTCCCCCACATCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGGTTTCTCTGAAGGTTTGTTCTGGGGGCAGGGCTCCCCCACATCC  883

seq1  TCTTGCTATACTGATAATTAGCATTCTCGTCTCTCGCAGCAGACCTGGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTATACTGATAATTAGCATTCTCGTCTCTCGCAGCAGACCTGGTT  933

seq1  TTCCCAGAAGTAGCCTGTCTCCCCCCTTTCTTGGCACATCCCTGAAGGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAAGTAGCCTGTCTCCCCCCTTTCTTGGCACATCCCTGAAGGCA  983

seq1  GGGCCTTTCCCTGTACCCAGCTGGCATTCCATCCTTGTGGCCCTGACCAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTTCCCTGTACCCAGCTGGCATTCCATCCTTGTGGCCCTGACCAA  1033

seq1  GATGTCCTTGCCTGCACCTGCCTTCTTGTCCCTAAAGAGGGTGCTCACTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCTTGCCTGCACCTGCCTTCTTGTCCCTAAAGAGGGTGCTCACTC  1083

seq1  ACTGGCTTAGAGTCCGGTGGTCCTCGGGGTCTTTGTCCAGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTAGAGTCCGGTGGTCCTCGGGGTCTTTGTCCAGGAATTC  1129

seq1: chr11_94771307_94772416
seq2: B6Ng01-309K19.g_67_1165

seq1  GAATTCCAGGCCAATCTGTTCTACTTAGCAAGTTCATGGTGAAAGAACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAATCTGTTCTACTTAGCAAGTTCATGGTGAAAGAACGA  50

seq1  GGAGTGGATGGGAAATCCAGCAAGATAGCACAGGGTAAAAGCACACATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGATGGGAAATCCAGCAAGATAGCACAGGGTAAAAGCACACATTG  100

seq1  CCAAGCCTGAGTACTTGAACTCCTTATCTGGGATCTAGAAGGTGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTGAGTACTTGAACTCCTTATCTGGGATCTAGAAGGTGAAAGAA  150

seq1  CTAGCTCGTGCAAGATGTCATCTGACTAGTGTGCTGTGGCATGTATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCGTGCAAGATGTCATCTGACTAGTGTGCTGTGGCATGTATTAAC  200

seq1  CTCCCGTCCCGAGGTAAATAAAAATTAAAAAACTGAAATAAGATCCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGTCCCGAGGTAAATAAAAATTAAAAAACTGAAATAAGATCCCTGA  250

seq1  AATAAGAGTCTTCTCTTTTCTTCCTCTCTCTCTCTTCCTATTTTATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGTCTTCTCTTTTCTTCCTCTCTCTCTCTTCCTATTTTATTTTA  300

seq1  TTTTATTTTATTTTATTTTATTTTATTTTTCCTACCTGTCTCCATACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATTTTATTTTATTTTATTTTTCCTACCTGTCTCCATACCTA  350

seq1  GGCAATTCAGCACAGTGGTAAGAGCAGGGTAGGCACTGTGACTGTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTCAGCACAGTGGTAAGAGCAGGGTAGGCACTGTGACTGTGCTGG  400

seq1  TGGTGAGCCACAGTGTCCAGAACAAGATGTCCAAAAACTGGAGAGTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCCACAGTGTCCAGAACAAGATGTCCAAAAACTGGAGAGTAGGG  450

seq1  GAAGGGTCAGCTGCTGGGAGAGCGAATGTTGTGGGCAGCAATGACCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTCAGCTGCTGGGAGAGCGAATGTTGTGGGCAGCAATGACCTAGG  500

seq1  CAGTTTATCAGTGGCATGGGGAAGGGTGTCCCTGCAGAGACGTCATGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATCAGTGGCATGGGGAAGGGTGTCCCTGCAGAGACGTCATGGCA  550

seq1  TGGAAAGCATGCATGCTTTGGGCAAGCAGTCTACCACTGCGATCCTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCATGCATGCTTTGGGCAAGCAGTCTACCACTGCGATCCTCATC  600

seq1  CCAGCATGGGTGCTCCGACAGCCACGAGACCTTATTCTCATGTCTTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGGGTGCTCCGACAGCCACGAGACCTTATTCTCATGTCTTAGTT  650

seq1  TTCTGGTATCATTTTCCAACAACAACAACAACAACAAAAAAGAAGCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTATCATTTTCCAACAACAACAACAACAACAAAAAAGAAGCAGAA  700

seq1  CTCTGGGTAACTGACAGACAGGAGGCAAAGAATGTACCTAATAAACTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTAACTGACAGACAGGAGGCAAAGAATGTACCTAATAAACTAGT  750

seq1  GCTATTTTGTTCCAGAGAGTAGGGAACTCCTCAAAGAATAATGAGTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTGTTCCAGAGAGTAGGGAACTCCTCAAAGAATAATGAGTCTGC  800

seq1  CTCAGTCAGCCTGGGCTCCTGTATGAAGCATCACAATCCGGGCAGCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAGCCTGGGCTCCTGTATGAAGCATCACAATCCGGGCAGCTGAA  850

seq1  ATGGCAGGCA-TTTTTTCCTACACTGCACTAGAGGCCAC-GGTCAAGGTG  898
      |||||||||| |||||||||||||||||||||||||||| |||||| |||
seq2  ATGGCAGGCATTTTTTTCCTACACTGCACTAGAGGCCACGGGTCAA-GTG  899

seq1  CTGACGAAGCTGATCTCTCTGCATCCTCTCCCCCATGTCTTCTCCTGGGT  948
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  CTGACGAAGCTGATCTCTCTGCATCCTCTCCCCCATGTC-TCTCCT-GGT  947

seq1  CTGCCCATTTTCCATCCTCTGAGTGTGCCCTACCTGGTGGTGTCTCTTCC  998
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  CTGCCCATTTTCCATCCTCTGAGTGTG-CCTACCTGGT-GTGTCTCTTCC  995

seq1  TCTTATAAAGCTGTCAGTCTTATTGAATTAGGGCTCCACCCTTATGACTT  1048
      || |||||||||||||||||||||||  || ||||||||||||||||| |
seq2  TC-TATAAAGCTGTCAGTCTTATTGA--TA-GGCTCCACCCTTATGAC-T  1040

seq1  CATTTAACCATAACCTC-TGTGGTGGTTTGAATAGTAGTGCCCATGGGAA  1097
      ||||| ||||||||||| ||||||| |||||||||||||| ||||||| |
seq2  CATTT-ACCATAACCTCTTGTGGTGCTTTGAATAGTAGTG-CCATGGG-A  1087

seq1  GTGGCACTGTTAG  1110
      || |||||| |||
seq2  GT-GCACTGCTAG  1099