BAC Information

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BAC

Clone NameB6Ng01-309L11
Chromosome11 (Build37)
Map Location 25,494,719 - 25,639,429
singlet/doubletdoublet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309L11.bB6Ng01-309L11.g
ACCGA101888GA101889
length1,1341,072
definitionB6Ng01-309L11.b B6Ng01-309L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,494,719 - 25,495,854)(25,638,359 - 25,639,429)
sequence
gaattcaaaaggtgtgaagttttgccttctggatactgacaattagaata
ttctatggtccttatttctgggactcttgcagaaggtggaaaaagtccac
gctagtgtttaagagttttaaacagtacactcactagatagggaagaagg
cataaaattactcattgagctaatctactcaatacagcttacatgtagcc
tctgccagatattgcaccaggcattgtattcaccagggagatgatgcagt
ttgagattcaatcgagacagaattagcttttgtgattagctaggctgagt
ggctaaggaaaagtagtaatgatatcattattccttcctcctctcctaca
gtattccgccacacacccatgcacacactcatatatctgttaggatttaa
tggtgaaccttcagtttagcttgtaaattatctaggaaacaaaaaggaat
ttgtgttgaatttcctctctgtgtaaaattgtcttggaatttgaagttct
tttctttttccttctataaagagaccatgagaaaaggttcagagaaaaca
taactggaaagatatatatatataaatgcaaattttcctaaacttcagcc
ttgggtggactgaagcagaagtgagatcttcaacaaagcaatagaaaaag
atgacagctcagagtttcaaaaatttaagacagcagcaggattagacact
ttgggttgtcttagcacacatttcttacgggagttaattccatttgacat
gcaagaccaaagcgagattacagaggcacagccccatggcgaggtgtatg
ctgtagctaaaagctggggatttgaataattgtgcaggcttactccaaga
atcgggcgagaacagaatgaatgggattattacaaggaactttgtacatt
tttaactgctggacttaataaaataccctccgtgtgagaacagtgttatg
ggcatctgctcttcctctagttgaagtttgtagtagaatctatcaaaact
gaggaaaaaacagaaactgttcttttaaaaaggagaaagaaagaaaaaaa
aaagatttataatgatactgggcctggtcatgcccatatgaattaccaca
ggatgcaaatttgagaacgtggagatgaccgtat

gaattcctcagcagtggagctctgaccttttaggagctgggaagcctgcc
aatggtccttgtaaaggagaaactgagtttgatgagtaagattgaaataa
aagtataccccaggggttagggatacagatgcctacaagaagatgggatg
agattccctaggaagctgtggcatcatggtatagcatgaagtcataactt
atttctccggagagggaaggtctgtaatgtgaactcctatcacttaatta
atgttgcctatagaagtcacacatttcagttgttgacaataggtagagca
gtgtaccagcccatcactgaagtggcttctccctgctggagaaaaagcat
attctcacaggggttcttaggctgctctttaattgcagtgatgctgttat
ttctcataatgcctaattgtggcatggattaataatgtgcctgtggccga
taatacaacacagcccactatgatttccatcagccatatttccccttctt
gctttattgtcttgtagacaacccttttcttccaaggagccacttttact
ttagtaacttgggacttggggaggggagttgaattttagtaggaagatac
aggttacttctagaaatatagaagcataattatgtaacatggtgctgaat
aagttacggtattaagaatacagaaatggaagccagaagacgagcttgcc
catctgacttaccaagtagttgtgcaatgtaacaactcacttaacatttc
agggcctcacctttctcttccgtaaaatgacagaatttgattaaatcaat
tctgaagtcccctctggtcataaaattataggaatctaagttaattgaaa
attgatggtacaatttagaggaagctttctgagtatagaacttctagaag
acatgctttttaattcttctctaacgcagaaattagagcaaattacccaa
gagctggagcagtgaaggccaagctttccaatgtgtgagaagaataattt
gttttatactgttacccctgcccactgtttctgaaaaaaaaaaatagaaa
tgtgattatcttttgaccttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25494719_25495854
seq2: B6Ng01-309L11.b_49_1182

seq1  GAATTCAAAAGGTGTGAAGTTTTGCCTTCTGGATACTGACAATTAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGTGTGAAGTTTTGCCTTCTGGATACTGACAATTAGAATA  50

seq1  TTCTATGGTCCTTATTTCTGGGACTCTTGCAGAAGGTGGAAAAAGTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGTCCTTATTTCTGGGACTCTTGCAGAAGGTGGAAAAAGTCCAC  100

seq1  GCTAGTGTTTAAGAGTTTTAAACAGTACACTCACTAGATAGGGAAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGTTTAAGAGTTTTAAACAGTACACTCACTAGATAGGGAAGAAGG  150

seq1  CATAAAATTACTCATTGAGCTAATCTACTCAATACAGCTTACATGTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTACTCATTGAGCTAATCTACTCAATACAGCTTACATGTAGCC  200

seq1  TCTGCCAGATATTGCACCAGGCATTGTATTCACCAGGGAGATGATGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGATATTGCACCAGGCATTGTATTCACCAGGGAGATGATGCAGT  250

seq1  TTGAGATTCAATCGAGACAGAATTAGCTTTTGTGATTAGCTAGGCTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTCAATCGAGACAGAATTAGCTTTTGTGATTAGCTAGGCTGAGT  300

seq1  GGCTAAGGAAAAGTAGTAATGATATCATTATTCCTTCCTCCTCTCCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGGAAAAGTAGTAATGATATCATTATTCCTTCCTCCTCTCCTACA  350

seq1  GTATTCCGCCACACACCCATGCACACACTCATATATCTGTTAGGATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCGCCACACACCCATGCACACACTCATATATCTGTTAGGATTTAA  400

seq1  TGGTGAACCTTCAGTTTAGCTTGTAAATTATCTAGGAAACAAAAAGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAACCTTCAGTTTAGCTTGTAAATTATCTAGGAAACAAAAAGGAAT  450

seq1  TTGTGTTGAATTTCCTCTCTGTGTAAAATTGTCTTGGAATTTGAAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGAATTTCCTCTCTGTGTAAAATTGTCTTGGAATTTGAAGTTCT  500

seq1  TTTCTTTTTCCTTCTATAAAGAGACCATGAGAAAAGGTTCAGAGAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCCTTCTATAAAGAGACCATGAGAAAAGGTTCAGAGAAAACA  550

seq1  TAACTGGAAAGATATATATATATAAATGCAAATTTTCCTAAACTTCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGAAAGATATATATATATAAATGCAAATTTTCCTAAACTTCAGCC  600

seq1  TTGGGTGGACTGAAGCAGAAGTGAGATCTTCAACAAAGCAATAGAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGACTGAAGCAGAAGTGAGATCTTCAACAAAGCAATAGAAAAAG  650

seq1  ATGACAGCTCAGAGTTTCAAAAATTTAAGACAGCAGCAGGATTAGACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCTCAGAGTTTCAAAAATTTAAGACAGCAGCAGGATTAGACACT  700

seq1  TTGGGTTGTCTTAGCACACATTTCTTACGGGAGTTAATTCCATTTGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGTCTTAGCACACATTTCTTACGGGAGTTAATTCCATTTGACAT  750

seq1  GCAAGACCAAAGCGAGATTACAGAGGCACAGCCCCATGGCGAGGTGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACCAAAGCGAGATTACAGAGGCACAGCCCCATGGCGAGGTGTATG  800

seq1  CTGTAGCTAAAAGCTGGGGATTTGAATAATTGTGCAGGCTTACTCCAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTAAAAGCTGGGGATTTGAATAATTGTGCAGGCTTACTCCAAGA  850

seq1  ATCGGGCGAGAACAGAATGAAT-GGATTATTACAAGGAACTTTGTACATT  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCGGGCGAGAACAGAATGAATGGGATTATTACAAGGAACTTTGTACATT  900

seq1  TTTAACTGCTGGACTTAATAAAATACCCTCCGTGTGAGAACAGTGTTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGCTGGACTTAATAAAATACCCTCCGTGTGAGAACAGTGTTATG  950

seq1  GGCATCTGCTCTTCCTCTAGTTGAAGTTTGTAGTAGAATCTATCAAAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGCTCTTCCTCTAGTTGAAGTTTGTAGTAGAATCTATCAAAACT  1000

seq1  GAGG-AAAAACAGAAACTGTTCTTTTAAAAAGGAGAAAGAAAAGAAAAAA  1048
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGGAAAAAACAGAAACTGTTCTTTTAAAAAGGAGAAAG-AAAGAAAAAA  1049

seq1  AAAGGATTTATAATGAATAACTGGGCTGGGTCATGCCCATATGATTTA-C  1097
      ||| ||||||||||||   |||||||  |||||||||||||||| ||| |
seq2  AAAAGATTTATAATGA--TACTGGGCCTGGTCATGCCCATATGAATTACC  1097

seq1  ACAGGAATGCAAAATTTGGAGAACGT-GAGATGAACGTAT  1136
      ||||| |||||||  || |||||||| ||||||| |||||
seq2  ACAGG-ATGCAAA--TTTGAGAACGTGGAGATGACCGTAT  1134


seq1: chr11_25638359_25639429
seq2: B6Ng01-309L11.g_68_1139 (reverse)

seq1  CTAAGGTC-AAAGATAATCACA-TTCTA-TTTTTTTTTTCAGAAACAGTG  47
      |||||||| ||||||||||||| ||||| |||||||||||||||||||||
seq2  CTAAGGTCAAAAGATAATCACATTTCTATTTTTTTTTTTCAGAAACAGTG  50

seq1  GCCAGGGGT-ACAGTATAAAAACAAAATTATCTTCTCACACATTGGAAGC  96
      | ||||||| ||||||| |||||||| |  ||||||||||||||||||  
seq2  GGCAGGGGTAACAGTAT-AAAACAAATTATTCTTCTCACACATTGGAAAG  99

seq1  TTTGGCCCTTCACTGCTCCAGCTCTTGGGTTATTTGCTCTAATTTCTGCG  146
       |||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTGG-CCTTCACTGCTCCAGCTCTTGGGTAATTTGCTCTAATTTCTGCG  148

seq1  TTAGAGAAGAATT-AAAAGCATGTCTTCTAGAAGTTCTATACTCAGAAAG  195
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAGAATTAAAAAGCATGTCTTCTAGAAGTTCTATACTCAGAAAG  198

seq1  CTTCCTCCTAAATTGTACCATCAATTTTCAATTAACTTAGATTCCTATAA  245
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCT-CTAAATTGTACCATCAATTTTCAATTAACTTAGATTCCTATAA  247

seq1  TTTTATGACCAGAGGGGACTTCAGAATTGATTTAATCAAATTCTGTCATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGACCAGAGGGGACTTCAGAATTGATTTAATCAAATTCTGTCATT  297

seq1  TTACGGAAGAGAAAGGTGAGGCCCTGAAATGTTAAGTGAGTTGTTACATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGAAGAGAAAGGTGAGGCCCTGAAATGTTAAGTGAGTTGTTACATT  347

seq1  GCACAACTACTTGGTAAGTCAGATGGGCAAGCTCGTCTTCTGGCTTCCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAACTACTTGGTAAGTCAGATGGGCAAGCTCGTCTTCTGGCTTCCAT  397

seq1  TTCTGTATTCTTAATACCGTAACTTATTTCAGCACCATGTTACATAATTA  445
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCTGTATTCTTAATACCGTAACTTA-TTCAGCACCATGTTACATAATTA  446

seq1  TGCTTCTATATTTCTAGAAGTAACCTGTATCTTCCTACTAAAATTCAACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTATATTTCTAGAAGTAACCTGTATCTTCCTACTAAAATTCAACT  496

seq1  CCCCTCCCCAAGTCCCAAGTTACTAAAGTAAAAGTGGCTCCTTGGAAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCAAGTCCCAAGTTACTAAAGTAAAAGTGGCTCCTTGGAAGAA  546

seq1  AAGGGTTGTCTACAAGACAATAAAGCAAGAAGGGGAAATATGGCTGATGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTGTCTACAAGACAATAAAGCAAGAAGGGGAAATATGGCTGATGG  596

seq1  AAATCATAGTGGGCTGTGTTGTATTATCGGCCACAGGCACATTATTAATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAGTGGGCTGTGTTGTATTATCGGCCACAGGCACATTATTAATC  646

seq1  CATGCCACAATTAGGCATTATGAGAAATAACAGCATCACTGCAATTAAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACAATTAGGCATTATGAGAAATAACAGCATCACTGCAATTAAAG  696

seq1  AGCAGCCTAAGAACCCCTGTGAGAATATGCTTTTTCTCCAGCAGGGAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTAAGAACCCCTGTGAGAATATGCTTTTTCTCCAGCAGGGAGAA  746

seq1  GCCACTTCAGTGATGGGCTGGTACACTGCTCTACCTATTGTCAACAACTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCAGTGATGGGCTGGTACACTGCTCTACCTATTGTCAACAACTG  796

seq1  AAATGTGTGACTTCTATAGGCAACATTAATTAAGTGATAGGAGTTCACAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTGACTTCTATAGGCAACATTAATTAAGTGATAGGAGTTCACAT  846

seq1  TACAGACCTTCCCTCTCCGGAGAAATAAGTTATGACTTCATGCTATACCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACCTTCCCTCTCCGGAGAAATAAGTTATGACTTCATGCTATACCA  896

seq1  TGATGCCACAGCTTCCTAGGGAATCTCATCCCATCTTCTTGTAGGCATCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCACAGCTTCCTAGGGAATCTCATCCCATCTTCTTGTAGGCATCT  946

seq1  GTATCCCTAACCCCTGGGGTATACTTTTATTTCAATCTTACTCATCAAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCTAACCCCTGGGGTATACTTTTATTTCAATCTTACTCATCAAAC  996

seq1  TCAGTTTCTCCTTTACAAGGACCATTGGCAGGCTTCCCAGCTCCTAAAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCTCCTTTACAAGGACCATTGGCAGGCTTCCCAGCTCCTAAAAG  1046

seq1  GTCAGAGCTCCACTGCTGAGGAATTC  1071
      ||||||||||||||||||||||||||
seq2  GTCAGAGCTCCACTGCTGAGGAATTC  1072


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