BAC Information

Click to search

BAC

Clone NameB6Ng01-310E09
Chromosome11 (Build37)
Map Location 60,682,916 - 60,683,562
singlet/doubletsinglet
Overlap geneTmem11
Upstream geneNt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b
Downstream geneGtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310E09.bB6Ng01-310E09.g
ACCGA102297GA102298
length1,185650
definitionB6Ng01-310E09.b B6Ng01-310E09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttatttttatgtataggagtacactgcagctgccttcagaaga
gggtatcagatcccattacagatggttgtgagccaccatgtggctgctgg
gaattgaactcaggacctctggaagagcagtcagtgttcttaactgcaga
cagtgcatctctctttaactgcagagccatctctccagcctccatcggac
acggtattctatcacagcaacagagaagtaactaatgtaagttgtactgt
gtttgattttgaatgttgtcaccaggtagggctatagagatggctctgca
gttaaagagaacttgctacttttatacagtacctgggttcagctcccagc
cctcaaatggtggcttacaactgtctgtaacttcagttccgagggatctg
atgccctcttctaacctccaagggtaccagctctatacatgtggtacata
gagacacatgcaggcaaaacactcatacatgtgaaataaaaaaacatata
tatattgctgccgccagacatggtagtgcacacctttaatccctatactc
aagagacaggaacagatggatgtctgtgatttgaaggctaacctggtccc
tcgaagatatgggcacaggggaaaaattcctgaatagaacagcaatggct
tgtgctgtaagatcgagaattgacaaattggacctcatgaaactgcaaag
cttctgcaaagcaaaagacaccgtcaataagacaaaaaggccaccaaaag
attgggaaggatctttactaccctaaatcagataggggactaatatccaa
tatatataaagaactcaagaaggtggactccagaaaatcaaataacccca
ttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatac
cgaatggctgagaagcacctgaaaaaatgttcagcatcctcaatcatcag
gaaatgcaatcaaaacaaccctgagattccacctcacactagtcagatgg
ctaagatcaaaatttcagtgacagcagatgctggcagatgtggagaaaga
ggaaccactcctccatgtggtgggattgcagcttgtcaaccactcctgga
aatcaagtctggtggattctcagaaaattgaactataggtactatacgag
atccgcacaccttctggcatatatcctaaaagatg
gaattcagagatccgcctgcctgtgcctcaagtgtttgtttgtttgtttg
tttatggtttttccagacagggtttctctgtgtagccctggctgtcctgg
aactcactttgtagaccaggctggcctagaactcagaaacccgcctgcct
ctgcctccaaagtgctgggattaaaggcgtgcgccagcactgcctggcct
atttatttttataaaccaaggtctttcactgtccctggagtttgccaact
ggctagactagcaggccaacgcccatctgtgtctcctctcctccagcact
gaggttacaggcacaggctagcacatccggcttctattcaggtgctcctc
ctgcaagcagagtgagcgccttagccactgagccatcttcccagcccctt
tccaccctatacttggcacaatctctggtacttaattaagaacactgtct
tatgcactttgctaacactgggtgaggggtcactctatcctgagcccttc
agcagaacaggcggcaaccttgctctagtatctcagggcatgggccatgc
ctagatcaatcagttttatgtaagggaggggggtagtaagcaggagtcac
ttggaaatgctggcatttgcagcaataaagcatctatattataaaactct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60682916_60683562
seq2: B6Ng01-310E09.g_70_719

seq1  GAATTCAGAGATCCGCCTGCCTGTGCCTCAAGTGTTTGTTTGTTTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATCCGCCTGCCTGTGCCTCAAGTGTTTGTTTGTTTGTTTG  50

seq1  TTTATGGTTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  100

seq1  AACTCACTTTGTAGACCAGGCTGGCCTAGAACTCAGAAACCCGCCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTTTGTAGACCAGGCTGGCCTAGAACTCAGAAACCCGCCTGCCT  150

seq1  CTGCCTCCAAAGTGCTGGGATTAAAGGCGTGCGCCAGCACTGCCTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCAAAGTGCTGGGATTAAAGGCGTGCGCCAGCACTGCCTGGCCT  200

seq1  ATTTATTTTTATAAACCAAGGTCTTTCACTGTCCCTGGAGTTTGCCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTATAAACCAAGGTCTTTCACTGTCCCTGGAGTTTGCCAACT  250

seq1  GGCTAGACTAGCAGGCCAACGCCCATCTGTGTCTCCTCTCCTCCAGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGACTAGCAGGCCAACGCCCATCTGTGTCTCCTCTCCTCCAGCACT  300

seq1  GAGGTTACAGGCACAGGCTAGCACATCCGGCTTCTATTCAGGTGCTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTACAGGCACAGGCTAGCACATCCGGCTTCTATTCAGGTGCTCCTC  350

seq1  CTGCAAGCAGAGTGAGCGCCTTAGCCACTGAGCCATCTTCCCAGCCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGCAGAGTGAGCGCCTTAGCCACTGAGCCATCTTCCCAGCCCCTT  400

seq1  TCCACCCTATACTTGGCACAATCTCTGGTACTTAATTAAGAACACTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTATACTTGGCACAATCTCTGGTACTTAATTAAGAACACTGTCT  450

seq1  TATGCACTTTGCTAACACTGGGTGAGGGGTCACTCTATCCTGAGCCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACTTTGCTAACACTGGGTGAGGGGTCACTCTATCCTGAGCCCTTC  500

seq1  AGCAGAACAGGCGGCAACCTTGCTCTAGTATCTCAGGGCATGGGCCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACAGGCGGCAACCTTGCTCTAGTATCTCAGGGCATGGGCCATGC  550

seq1  CTAGATCAATCAGTTTTATGTAAGGGAGGGGGGTAGTAAGCAGGAGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCAATCAGTTTTATGTAAGGGAGGGGGGTAGTAAGCAGGAGTCAC  600

seq1  TTGGAAATGCTGGCA-TTGCAGC-AGAAAGCAGCTATATGA-GAAACTCT  647
      ||||||||||||||| ||||||| | |||||| |||||| |  |||||||
seq2  TTGGAAATGCTGGCATTTGCAGCAATAAAGCATCTATATTATAAAACTCT  650