BAC Information

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BAC

Clone NameB6Ng01-310H08
Chromosome11 (Build37)
Map Location 47,302,135 - 47,454,403
singlet/doubletdoublet
Overlap geneLOC628753
Upstream geneLOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
Downstream geneLOC100039647, LOC192895, Hn1l-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310H08.bB6Ng01-310H08.g
ACCGA102429GA102430
length1,1461,119
definitionB6Ng01-310H08.b B6Ng01-310H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,302,135 - 47,303,297)(47,453,274 - 47,454,403)
sequence
gaattcataaagtatggtaggctgtatgtctactgaaccctgagagtcca
gatgtttccgtctctccatttttgttctgtcttgttttgatatgagttct
gggatcaaatttaggttttcttgcttgcaagcccagtattttacctacca
cgcctcctgcccagcctacatgcagatgtttattttgttctgtattctga
ttttagaattcacaatctataaaggggcagaactagcctaagatcataaa
caatgtaatccttcctttggaaatgtaaactcaaagattaattctaaact
ggcagaattgttgccaattagtttttatgatttttttttctgcactgtac
cctgacacattttgatctaaaatgtgtcttgtatatagggcggaagcttt
gtttggcaaagcagaattggaaccgactccaagcatctctacctttccca
aaccttatgcttggccttaactgtcattgaatcaaccctaatgcagggag
cagaaacagcattcgcagccaaattactatggaagggtagtagtgaggct
ttggattctattttaatatgaccttgatagcatattacagagttaaagcc
acttccaaatgaagtggcatctattcaaaatacaaggccctattttgaca
gatttcctgatcctggagcaagtgacaatatttttctcagtggaaaaaaa
acatgtaaaaaataacattcagaatgctgcaagataccataagttatatg
atgtttatctgtctacgcaaaaaaaaaaatgtgtatataaacttgagtgc
aaaagtagcttttgtgcacatatacatttatacacatataggttcatata
tgtatatggtaaacatggttacttttctatttgcaaatttgaatcaatgt
ttaaaactaaaaattttaactttttacaactttttcttaatttgatactt
tcaatgctctcacaggaaaaagctaagtagataaaatattatttcaaaaa
cgaaaaaacttaactaaaaaatactgttattttccaagtggtatagggag
gtatctcagtggtacaataacttgtctatcatgcctgtccttggtatacc
acatgcacgcacatcaatcacacacacacacaacactggaaagaga

gaattccatctgcctcttagccatcccagagaatgggtcctgaaatggca
catttcttttctttcacccaacatgggttacaatgaagacaaaagagccc
attctcattcttgaaatgctgtcattgcaggaggccaaggccattgtctt
gcaacccagactttaggttgtaaatgtaaagacagtggctgtactgacat
tgtgttttgggaaatgcacagctctttgacccctaataaacagtctgaaa
agagtaaggaaggcgctggacagatggttcagcagttaaaagcccttact
gctcccatagaagacacaattccaattcctagaccacaggaggcagctca
caatcatctgtaactctacatccagaagatcagatgccctctactgtctc
ttttggcctccataggaacctaaatccacttgcatgtatttgtgtatgca
tacacacatacacacacactcataatttaattaaaaataaatatttaaga
agaatagggaagctacaatttgaacttgtggcatgacacttaattatctt
aatgatttctagttatattatttagactttcttttttgaggtaggatctt
ataaatggcctttgatccttctttctccactaccaagtagtggggctaac
aagcatgaaccaatgaacacagccactatccaccagtttgacttcttgag
ataaggtttggctgtatagctcaggctggtctagaatttgtgattttcca
tcctcagcttcccaagtaccaaatttccactgtggaccaccacactgagg
tcttcatttccctctttatcttgtgaggacttgtcattgtcttccacaaa
tgaggatagactaacaccccggaagccaaattaacatccccagtttacaa
tcagagaattgaaatttgagtccagatgggcttgggtctagagagcaagt
tttttgtgtttataaatgatatgccaagtgccttttcctgccagagcttt
gctgagagtagtgatcagggaggagtgaagcaagtaagaactcatgctca
gttgcctgccgttactagaggactggatcataccgccagtcccaggtttt
cttcttgaacgtgaaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47302135_47303297
seq2: B6Ng01-310H08.b_46_1191

seq1  GAATTCATAAAGTATGGTAGGCTGTATGTCTACTGAACCCTGAGAGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAGTATGGTAGGCTGTATGTCTACTGAACCCTGAGAGTCCA  50

seq1  GATGTTTCCGTCTCTCCATTTTTGTTCTGTCTTGTTTTGATATGAGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCCGTCTCTCCATTTTTGTTCTGTCTTGTTTTGATATGAGTTCT  100

seq1  GGGATCAAATTTAGGTTTTCTTGCTTGCAAGCCCAGTATTTTACCTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAAATTTAGGTTTTCTTGCTTGCAAGCCCAGTATTTTACCTACCA  150

seq1  CGCCTCCTGCCCAGCCTACATGCAGATGTTTATTTTGTTCTGTATTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCTGCCCAGCCTACATGCAGATGTTTATTTTGTTCTGTATTCTGA  200

seq1  TTTTAGAATTCACAATCTATAAAGGGGCAGAACTAGCCTAAGATCATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATTCACAATCTATAAAGGGGCAGAACTAGCCTAAGATCATAAA  250

seq1  CAATGTAATCCTTCCTTTGGAAATGTAAACTCAAAGATTAATTCTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAATCCTTCCTTTGGAAATGTAAACTCAAAGATTAATTCTAAACT  300

seq1  GGCAGAATTGTTGCCAATTAGTTTTTATGATTTTTTTTTCTGCACTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATTGTTGCCAATTAGTTTTTATGATTTTTTTTTCTGCACTGTAC  350

seq1  CCTGACACATTTTGATCTAAAATGTGTCTTGTATATAGGGCGGAAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACATTTTGATCTAAAATGTGTCTTGTATATAGGGCGGAAGCTTT  400

seq1  GTTTGGCAAAGCAGAATTGGAACCGACTCCAAGCATCTCTACCTTTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCAAAGCAGAATTGGAACCGACTCCAAGCATCTCTACCTTTCCCA  450

seq1  AACCTTATGCTTGGCCTTAACTGTCATTGAATCAACCCTAATGCAGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTATGCTTGGCCTTAACTGTCATTGAATCAACCCTAATGCAGGGAG  500

seq1  CAGAAACAGCATTCGCAGCCAAATTACTATGGAAGGGTAGTAGTGAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAGCATTCGCAGCCAAATTACTATGGAAGGGTAGTAGTGAGGCT  550

seq1  TTGGATTCTATTTTAATATGACCTTGATAGCATATTACAGAGTTAAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTCTATTTTAATATGACCTTGATAGCATATTACAGAGTTAAAGCC  600

seq1  ACTTCCAAATGAAGTGGCATCTATTCAAAATACAAGGCCCTATTTTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAATGAAGTGGCATCTATTCAAAATACAAGGCCCTATTTTGACA  650

seq1  GATTTCCTGATCCTGGAGCAAGTGACAATATTTTTCTCAGTGGAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTGATCCTGGAGCAAGTGACAATATTTTTCTCAGTGGAAAAAAA  700

seq1  ACATGTAAAAAATAACATTCAGAATGCTGCAAGATACCATAAGTTATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAAAAATAACATTCAGAATGCTGCAAGATACCATAAGTTATATG  750

seq1  ATGTTTATCTGTCTACGCAAAAAAAAAAATGTGTATATAAACTTGAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATCTGTCTACGCAAAAAAAAAAATGTGTATATAAACTTGAGTGC  800

seq1  AAAAGTAGCTTTTGTGCACATATACATTTATACACATATAGGTTCATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGCTTTTGTGCACATATACATTTATACACATATAGGTTCATATA  850

seq1  TGTATATGGTAAACATGGTTACTTTTCTATTTGCAAATTTGAATCAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGGTAAACATGGTTACTTTTCTATTTGCAAATTTGAATCAATGT  900

seq1  TTAAAACTAAAAATTTTAACTTTTTACAACTTTTTCTTAATTTGATACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTAAAAATTTTAACTTTTTACAACTTTTTCTTAATTTGATACTT  950

seq1  TCAATGCTCTCACAGGAAAAAGCTAAGTAGAT-AAATATTATTTCAAAAA  999
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAATGCTCTCACAGGAAAAAGCTAAGTAGATAAAATATTATTTCAAAAA  1000

seq1  CGAAAAAACTTAACT-AAAAATACTGTTATTTTCCCAAGGTGGGTATAGG  1048
      ||||||||||||||| ||||||||||||||||| |||||   ||||||||
seq2  CGAAAAAACTTAACTAAAAAATACTGTTATTTT-CCAAG--TGGTATAGG  1047

seq1  GAGGTATCTCAGTGGTACAAT-ACTTGTCTATCATGCCTTGGTCCTTGGG  1097
      ||||||||||||||||||||| |||||||||||||||||  |||||||| 
seq2  GAGGTATCTCAGTGGTACAATAACTTGTCTATCATGCCT--GTCCTTGG-  1094

seq1  GTAAATACACACATGCACGCACACACACACACACACACACACACACCACT  1147
          |||| ||||||||||||||    ||  |||||||||||||| ||||
seq2  ---TATAC-CACATGCACGCACA---TCAATCACACACACACACAACACT  1137

seq1  GAGAGAGAGAAAGAGA  1163
      |       ||||||||
seq2  G-------GAAAGAGA  1146


seq1: chr11_47453274_47454403
seq2: B6Ng01-310H08.g_68_1186 (reverse)

seq1  TGCTCTTCACGTTTTCAGAAGAAAACCTTGGGAACTGGCGGTATGATCCA  50
      |||| |||||| ||  ||||||||||||  || |||||||||||||||||
seq2  TGCT-TTCACG-TTCAAGAAGAAAACCT--GGGACTGGCGGTATGATCCA  46

seq1  GTCCTCTAGTAAACGGCAGGCAACCTGAGCATGAGTTCTTTACCTGCTTC  100
      |||||||||| |||||||||||| |||||||||||||| |||| ||||||
seq2  GTCCTCTAGT-AACGGCAGGCAA-CTGAGCATGAGTTC-TTACTTGCTTC  93

seq1  ACTCCTCCCTGATCACTACTCTCAAGCAAAGCCTCTGGCAGGGAAAAGGC  150
      ||||||||||||||||||||||| ||||||| |||||||| |||||||||
seq2  ACTCCTCCCTGATCACTACTCTC-AGCAAAG-CTCTGGCA-GGAAAAGGC  140

seq1  ACTTGGCATATCATTTATTAAACACAAAAAACTTGCTCTCTAGACCCAAG  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTTGGCATATCATTTA-TAAACACAAAAAACTTGCTCTCTAGACCCAAG  189

seq1  CCCATCTGGACTCAAATTTCAATTCTCTGATTGTAAACTGGGGATGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGGACTCAAATTTCAATTCTCTGATTGTAAACTGGGGATGTTAA  239

seq1  TTTGGCTTCCGGGGTGTTAGTCTATCCTCATTTGTGGAAGACAATGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTCCGGGGTGTTAGTCTATCCTCATTTGTGGAAGACAATGACAA  289

seq1  GTCCTCACAAGATAAAGAGGGAAATGAAGACCTCAGTGTGGTGGTCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACAAGATAAAGAGGGAAATGAAGACCTCAGTGTGGTGGTCCACA  339

seq1  GTGGAAATTTGGTACTTGGGAAGCTGAGGATGGAAAATCACAAATTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATTTGGTACTTGGGAAGCTGAGGATGGAAAATCACAAATTCTAG  389

seq1  ACCAGCCTGAGCTATACAGCCAAACCTTATCTCAAGAAGTCAAACTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTGAGCTATACAGCCAAACCTTATCTCAAGAAGTCAAACTGGTG  439

seq1  GATAGTGGCTGTGTTCATTGGTTCATGCTTGTTAGCCCCACTACTTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGGCTGTGTTCATTGGTTCATGCTTGTTAGCCCCACTACTTGGTA  489

seq1  GTGGAGAAAGAAGGATCAAAGGCCATTTATAAGATCCTACCTCAAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAAGAAGGATCAAAGGCCATTTATAAGATCCTACCTCAAAAAAG  539

seq1  AAAGTCTAAATAATATAACTAGAAATCATTAAGATAATTAAGTGTCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAAATAATATAACTAGAAATCATTAAGATAATTAAGTGTCATGC  589

seq1  CACAAGTTCAAATTGTAGCTTCCCTATTCTTCTTAAATATTTATTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTTCAAATTGTAGCTTCCCTATTCTTCTTAAATATTTATTTTTAA  639

seq1  TTAAATTATGAGTGTGTGTGTATGTGTGTATGCATACACAAATACATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATGAGTGTGTGTGTATGTGTGTATGCATACACAAATACATGCA  689

seq1  AGTGGATTTAGGTTCCTATGGAGGCCAAAAGAGACAGTAGAGGGCATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATTTAGGTTCCTATGGAGGCCAAAAGAGACAGTAGAGGGCATCTG  739

seq1  ATCTTCTGGATGTAGAGTTACAGATGATTGTGAGCTGCCTCCTGTGGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGGATGTAGAGTTACAGATGATTGTGAGCTGCCTCCTGTGGTCT  789

seq1  AGGAATTGGAATTGTGTCTTCTATGGGAGCAGTAAGGGCTTTTAACTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGGAATTGTGTCTTCTATGGGAGCAGTAAGGGCTTTTAACTGCT  839

seq1  GAACCATCTGTCCAGCGCCTTCCTTACTCTTTTCAGACTGTTTATTAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCTGTCCAGCGCCTTCCTTACTCTTTTCAGACTGTTTATTAGGG  889

seq1  GTCAAAGAGCTGTGCATTTCCCAAAACACAATGTCAGTACAGCCACTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAGCTGTGCATTTCCCAAAACACAATGTCAGTACAGCCACTGTC  939

seq1  TTTACATTTACAACCTAAAGTCTGGGTTGCAAGACAATGGCCTTGGCCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTACAACCTAAAGTCTGGGTTGCAAGACAATGGCCTTGGCCTC  989

seq1  CTGCAATGACAGCATTTCAAGAATGAGAATGGGCTCTTTTGTCTTCATTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATGACAGCATTTCAAGAATGAGAATGGGCTCTTTTGTCTTCATTG  1039

seq1  TAACCCATGTTGGGTGAAAGAAAAGAAATGTGCCATTTCAGGACCCATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCATGTTGGGTGAAAGAAAAGAAATGTGCCATTTCAGGACCCATTC  1089

seq1  TCTGGGATGGCTAAGAGGCAGATGGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  TCTGGGATGGCTAAGAGGCAGATGGAATTC  1119


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