BAC Information

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BAC

Clone NameB6Ng01-311D23
Chromosome11 (Build37)
Map Location 19,429,442 - 19,539,135
singlet/doubletdoublet
Overlap geneLOC100042708
Upstream geneMeis1, LOC635455
Downstream geneGlns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311D23.bB6Ng01-311D23.g
ACCGA103013GA103014
length1,1881,082
definitionB6Ng01-311D23.b B6Ng01-311D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,429,442 - 19,430,623)(19,538,062 - 19,539,135)
sequence
gaattcataatggaattagcctgcggcaaacaaagaaagacaaaattaaa
tcagccatcaaattgcaccaaggaattttaatttacaggttaatgtagga
ttatgtaactaatcacagctaacattttcaatgaacagccaataaaattc
tgcccgttttttttctttctaatctaactaatggtatcccaataacatat
ctttattactctatagtatgcttaaaatgggtctcaaaaaactctaagtc
tttctgatcatcagaaacagggaagaaactgttttgaaataatccatcaa
aagtgtggacctagaaagagccaggcgctcctcagtgcagcccagagctt
ataatatctgggcgagtttgcataaaacagatttacataaccatatagct
ttaaagcctatgtatgtctctcatgcaggcagggagctcaaatgagacaa
aagagactaaattaaagatgtgaaactaatttggagcacaaagtatatca
gctaattctaaataaaaccactgccatggatttatatgtcaatattgcag
acatatccaatgacagacacaccagggctgcactaacagggttttcatgg
tttataaatgtgaacatcataacaagaaataaggtttctgggctaaaaag
ttgattagcattcccccggggagggggctggagtcttgtatactccccag
ttatatttcgatatcaaccaatgcatggcaaagagagaaaagaatacctc
tatgcaattcgaaaaattatctgaaaccttcagcttcataaatataaata
tgtaaacagacagcataactctctacacactgggcaagaagaacctccga
atttatactgtacgcttaagaaagacatcagcttaatcaaaaagatcttt
tcccaacatatggcagaagggaaattattataaatggggtaaaaagtatg
ttcataagctttacttcacgggggaagaatgctgaggagagggggcggcg
acattcttcttgcatatgttttttcttgtaagaagaacaatgtggggaaa
gtctcggttctcttgaatctaatgttcatttttatggaaagcagcaacaa
tcggccagttattagcaaaaggagctttgttgcttgaataaggtctattg
aatggctacgtccaaaaacagttatggtgtctcaattg
gaattctccacttagttcccgagttctgctcttgatatatgcaaagaaaa
cttctggataggagtgataccagttcctcctttagcaaaacccacttcta
agacagtaacttgtgacatctgctatgaagtgtgagccgtaggaagaact
cagttgtacctctttcattcttcccttttcctttttttctgaaataatga
atgacacagattatgtgagcagaaagcagcggagcaccatgattgatggg
caatgaaaaatgtattattagtgtgatcttgtcagaaacatggtggaaag
agttgggagcttctgagttagaataaggggatcaactggggttatagctg
actcagaaacaaacaccctagcttgccaccttgttgtgttttgttttgtt
ttgttttgttttggttttggttttttgagacagggtttctctgtgtagcc
ctggctgtcctgtaactcactttgtagaccaggctggcctcaaactcaga
aattcacctgcctctgcctcccaagcgctgggattaaaggccaccttgta
ttcttgtatcctagcctgctaccctgtgtccttgtatcctagcctgccac
cctgtatccttgtaatgactagggggccaaggtgattgttgcctgatgat
agtgatggagtggtcatggaatatacagagggaaagagaacaggatctct
ttgacttattgggttgtctgcttcaccatcacagagctggtcagacatat
gagtcacccaaccaactgtagggaaaggcaggtgtgtccctctcatcatg
gctgcacagagaggcctccaaggctcctggggcctgctccagagcttcta
agggactgctccagtgtctctgggaagagctgtcaaacttttcttagtaa
agactgattcttgtactggtggcattttctggcttttttgtgctatgggg
aagtggcatgaaatttactcagctcagctatgggtactgacaagcagtgt
gggctgttgctgaggcatgacttcttctctgtgtatccatggactactcc
atcatcatcatcatcatcatcatcatctagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_19429442_19430623
seq2: B6Ng01-311D23.b_43_1230

seq1  GAATTCATAATGGAATTAGCCTGCGGCAAACAAAGAAAGACAAAATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGGAATTAGCCTGCGGCAAACAAAGAAAGACAAAATTAAA  50

seq1  TCAGCCATCAAATTGCACCAAGGAATTTTAATTTACAGGTTAATGTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCATCAAATTGCACCAAGGAATTTTAATTTACAGGTTAATGTAGGA  100

seq1  TTATGTAACTAATCACAGCTAACATTTTCAATGAACAGCCAATAAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAACTAATCACAGCTAACATTTTCAATGAACAGCCAATAAAATTC  150

seq1  TGCCCGTTTTTTTTCTTTCTAATCTAACTAATGGTATCCCAATAACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGTTTTTTTTCTTTCTAATCTAACTAATGGTATCCCAATAACATAT  200

seq1  CTTTATTACTCTATAGTATGCTTAAAATGGGTCTCAAAAAACTCTAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTACTCTATAGTATGCTTAAAATGGGTCTCAAAAAACTCTAAGTC  250

seq1  TTTCTGATCATCAGAAACAGGGAAGAAACTGTTTTGAAATAATCCATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATCATCAGAAACAGGGAAGAAACTGTTTTGAAATAATCCATCAA  300

seq1  AAGTGTGGACCTAGAAAGAGCCAGGCGCTCCTCAGTGCAGCCCAGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGACCTAGAAAGAGCCAGGCGCTCCTCAGTGCAGCCCAGAGCTT  350

seq1  ATAATATCTGGGCGAGTTTGCATAAAACAGATTTACATAACCATATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCTGGGCGAGTTTGCATAAAACAGATTTACATAACCATATAGCT  400

seq1  TTAAAGCCTATGTATGTCTCTCATGCAGGCAGGGAGCTCAAATGAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCTATGTATGTCTCTCATGCAGGCAGGGAGCTCAAATGAGACAA  450

seq1  AAGAGACTAAATTAAAGATGTGAAACTAATTTGGAGCACAAAGTATATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTAAATTAAAGATGTGAAACTAATTTGGAGCACAAAGTATATCA  500

seq1  GCTAATTCTAAATAAAACCACTGCCATGGATTTATATGTCAATATTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTCTAAATAAAACCACTGCCATGGATTTATATGTCAATATTGCAG  550

seq1  ACATATCCAATGACAGACACACCAGGGCTGCACTAACAGGGTTTTCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCCAATGACAGACACACCAGGGCTGCACTAACAGGGTTTTCATGG  600

seq1  TTTATAAATGTGAACATCATAACAAGAAATAAGGTTTCTGGGCTAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATGTGAACATCATAACAAGAAATAAGGTTTCTGGGCTAAAAAG  650

seq1  TTGATTAGCATTCCCCCGGGGAGGGGGCTGGAGTCTTGTATACTCCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAGCATTCCCCCGGGGAGGGGGCTGGAGTCTTGTATACTCCCCAG  700

seq1  TTATATTTCGATATCAACCAATGCATGGCAAAGAGAGAAAAGAATACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTCGATATCAACCAATGCATGGCAAAGAGAGAAAAGAATACCTC  750

seq1  TATGCAATTCGAAAAATTATCTGAAACCTTCAGCTTCATAAATATAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATTCGAAAAATTATCTGAAACCTTCAGCTTCATAAATATAAATA  800

seq1  TGTAAACAGACAGCATAACTCTCTACACACT-GGCAAGAAGAACCTCCGA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTAAACAGACAGCATAACTCTCTACACACTGGGCAAGAAGAACCTCCGA  850

seq1  ATTTATACTGTACGCTTAAG-AAGACATCAGCTTAATCAAAAAGATCTTT  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTTATACTGTACGCTTAAGAAAGACATCAGCTTAATCAAAAAGATCTTT  900

seq1  TCCCAACATATGGCAGAAGGGAAATTATTATAAATGGGGTAAAAAGTATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACATATGGCAGAAGGGAAATTATTATAAATGGGGTAAAAAGTATG  950

seq1  TTCATAAGCTTTACTTCACGGGGGAAGAATGCTGAGGAGA-GGGGCGGCG  997
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCATAAGCTTTACTTCACGGGGGAAGAATGCTGAGGAGAGGGGGCGGCG  1000

seq1  ACATTCTTCTTGCATATG-TTTTTCTTGTA--GAGAACAATGT-GGGAAA  1043
      |||||||||||||||||| |||||||||||   |||||||||| ||||||
seq2  ACATTCTTCTTGCATATGTTTTTTCTTGTAAGAAGAACAATGTGGGGAAA  1050

seq1  GTCTC-GTTCTCCTTGAATCTAAATGTTCA-TTTTATGG-AAGCAGCAAC  1090
      ||||| ||||| ||||||||| |||||||| |||||||| ||||||||||
seq2  GTCTCGGTTCT-CTTGAATCT-AATGTTCATTTTTATGGAAAGCAGCAAC  1098

seq1  ATTCGGCCCAGTTATTAGC-AAAGGAGTTTTGTTGCTTG-ATAAAGTCTA  1138
      | |||| |||||||||||| ||||||| ||||||||||| |||| |||||
seq2  AATCGG-CCAGTTATTAGCAAAAGGAGCTTTGTTGCTTGAATAAGGTCTA  1147

seq1  ATTTTAAAATGCTCACTTCCAAAAAAACATTATGGTG--TCAATTG  1182
         || ||  ||| || |||||||| |  ||||||||  |||||||
seq2  ---TTGAATGGCT-ACGTCCAAAAACA-GTTATGGTGTCTCAATTG  1188

seq1: chr11_19538062_19539135
seq2: B6Ng01-311D23.g_64_1145 (reverse)

seq1  CACTAGATGATGATGATGATGATGATGATGATGGAGTAGT-CATGGAATA  49
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  CACTAGATGATGATGATGATGATGATGATGATGGAGTAGTCCATGG-ATA  49

seq1  CACAGAGGAAGAAGTCATGCTTCAGCAACAGCCCACACTGCTTTGTCAGT  99
      |||||| ||||||||||||| |||||||||||||||||||| ||||||||
seq2  CACAGA-GAAGAAGTCATGCCTCAGCAACAGCCCACACTGC-TTGTCAGT  97

seq1  A-CCATAGCTGAGCTGAGTAAA-TTCATG-CACTT-CCCATAGCAC-AAA  144
      | |||||||||||||||||||| |||||| ||||| |||||||||| |||
seq2  ACCCATAGCTGAGCTGAGTAAATTTCATGCCACTTCCCCATAGCACAAAA  147

seq1  AAGCCAG-AAATGCCA-CAGTAC-AGAATCAGTTCTTTACTAAG-AAAGT  190
      ||||||| |||||||| |||||| |||||||| ||||||||||| |||||
seq2  AAGCCAGAAAATGCCACCAGTACAAGAATCAG-TCTTTACTAAGAAAAGT  196

seq1  TTGACAGCTCTT-CCAGAGACACTGGAGCAGTCCCTTAGAAGCTCTGGAG  239
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCTCTTCCCAGAGACACTGGAGCAGTCCCTTAGAAGCTCTGGAG  246

seq1  CAGGCCCCAGGAGCCTTGGAGGCCTCTCTGTGCAGCCATGATGAGAGGGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCAGGAGCCTTGGAGGCCTCTCTGTGCAGCCATGATGAGAGGGA  296

seq1  CACACCTGCCTTTCCCTACAGTTGGTTGGGTGACTCATATGTCTGACCAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGCCTTTCCCTACAGTTGGTTGGGTGACTCATATGTCTGACCAG  346

seq1  CTCTGTGATGGTGAAGCAGACAA-CCAATAAGTCAAAGAGATCCTGTTCT  388
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCTGTGATGGTGAAGCAGACAACCCAATAAGTCAAAGAGATCCTGTTCT  396

seq1  CTTTCCCTCTGTATATTCCATGACCACTCCATCACTATCATCAGGCAACA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTCTGTATATTCCATGACCACTCCATCACTATCATCAGGCAACA  446

seq1  ATCACCTTGGCCCCCTAGTCATTACAAGGATACAGGGTGGCAGGCTAGGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTGGCCCCCTAGTCATTACAAGGATACAGGGTGGCAGGCTAGGA  496

seq1  TACAAGGACACAGGGTAGCAGGCTAGGATACAAGAATACAAGGTGGCCTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGACACAGGGTAGCAGGCTAGGATACAAGAATACAAGGTGGCCTT  546

seq1  TAATCCCAGCGCTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTTGAGGC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCGCTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTTGAGGC  596

seq1  CAGCCTGGTCTACAAAGTGAGTTACAGGACAGCCAGGGCTACACAGAGAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAAAGTGAGTTACAGGACAGCCAGGGCTACACAGAGAA  646

seq1  ACCCTGTCTCAAAAAACCAAAACCAAAACAAAACAAAACAAAACAAAACA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAAAAAACCAAAACCAAAACAAAACAAAACAAAACAAAACA  696

seq1  CAACAAGGTGGCAAGCTAGGGTGTTTGTTTCTGAGTCAGCTATAACCCCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGTGGCAAGCTAGGGTGTTTGTTTCTGAGTCAGCTATAACCCCA  746

seq1  GTTGATCCCCTTATTCTAACTCAGAAGCTCCCAACTCTTTCCACCATGTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCCCCTTATTCTAACTCAGAAGCTCCCAACTCTTTCCACCATGTT  796

seq1  TCTGACAAGATCACACTAATAATACATTTTTCATTGCCCATCAATCATGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGATCACACTAATAATACATTTTTCATTGCCCATCAATCATGG  846

seq1  TGCTCCGCTGCTTTCTGCTCACATAATCTGTGTCATTCATTATTTCAGAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCGCTGCTTTCTGCTCACATAATCTGTGTCATTCATTATTTCAGAA  896

seq1  AAAAAGGAAAAGGGAAGAATGAAAGAGGTACAACTGAGTTCTTCCTACGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAAGGGAAGAATGAAAGAGGTACAACTGAGTTCTTCCTACGG  946

seq1  CTCACACTTCATAGCAGATGTCACAAGTTACTGTCTTAGAAGTGGGTTTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTTCATAGCAGATGTCACAAGTTACTGTCTTAGAAGTGGGTTTT  996

seq1  GCTAAAGGAGGAACTGGTATCACTCCTATCCAGAAGTTTTCTTTGCATAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGGAGGAACTGGTATCACTCCTATCCAGAAGTTTTCTTTGCATAT  1046

seq1  ATCAAGAGCAGAACTCGGGAACTAAGTGGAGAATTC  1074
      ||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGCAGAACTCGGGAACTAAGTGGAGAATTC  1082