BAC Information

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BAC

Clone NameB6Ng01-311O16
Chromosome11 (Build37)
Map Location 106,079,266 - 106,080,442
singlet/doubletsinglet
Overlap geneDdx42
Upstream geneTlk2, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik
Downstream geneFtsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311O16.bB6Ng01-311O16.g
ACCGA103517GA103518
length1,1631,169
definitionB6Ng01-311O16.b B6Ng01-311O16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctatagaccaggctggcctcgaactcagagatccacctgcc
tctgcctcccaagtgctgggattaaaggcgtgcatcaccacccgtcgtgg
gtggtaggttatgtcttaattcgtttaaactttgtagagtccaatcctgt
tctgacaggtgggaagtgaacagtaagtctgatataaaaatttattcttc
cagggcgaaaatgttattttactttacctagaaggagaattgcagtgatt
catttaaaaataaaattgttattgccttgcctctgtgcctgttctctctt
gaattgcttaagtgttaaatctatgaccactgcactcatgagactcttta
tatacattttttggacgtattattttgtttgtctttgtttttgttttttc
aagacagggcttttctgtatagctcttgttgttctggaactcactctgta
gaccaggctggcctggaactcagaaatctgcctgcctctgcctcccaagt
gctgggattaaaggcatgcgccaccactgcccggcacgttatttctttat
gtatgtttatcatgccctcctgtagaggttagaggccaacctctgggagt
tggttttctccttccactatgtaggtcctcaggatggaattctggtcagg
cgattaatctgtagaaccattttaccagtccatttatgaaactttctaaa
gaagaaggagagatgtgtgttatgctttatgttaaagagtagtctgtacc
agcaaaggaggcttgggagaagctgcaatagagtagtcagggaaagccct
ttctggtatctaacagatatttaggcaagctagaaaatggtgagagcatc
taaccacggaggtatctggagaaaggaatgttctgagcaggtggacagca
atcatgaaggccttgaagggacaaagctgggcctgttagaggagcagtgt
gtttgtagcacttagcaatgaaggatgagagatgaggatgagatgagatg
acgatgagaccgtaaaggaagaaagaaacaagcactaggcttgtagaacg
gttttgaagattttgtcctcatcttgcatgaattggggctgtctgagcag
aggagtgctaaatcctgacttacattcatccagtcattcactggaatgta
gattggaataata
gaattctccttaatagggacggggtttcgttttctctctctcttgcttct
tgcactctggctcctgaagatgtaagcaataaagctttgccgcagaagat
tctggtctgttgcgtctttcctggccggtcgtgagaacgcgtctaataac
aattggtgctgaaacccgggacgagaaaaaactcgggactggcgcaagga
agatccctcattccagaaccagaactgcgggtcgcggtaataaaggttcc
cgtaaagcagactgttaagaaggattcaactgtatgaattcagaactttt
cagctggggaacgagagtaccagtgagtacagctttacgaggtaagtctg
atcttgaactttctaaggaaattcaagacagtctatcagaagtaaagtgg
aatatgtttggccttgaattttttctggtgttaggagcccttttgttcct
tttcacatgttatcaagtgattaagatagggctaaaaattctagaggaaa
ttcaggacaagctatcagaagtaaagcggggagagagagtaggagcaaag
agaaaatatggtacacaaaataagcgtacaggcctttccacgggtcttga
ccccgaggaaaagttaaggttaggtaagaatacctagagagagattagaa
gaaaaagaggaaaaagggaaaagaagaaagatcaattagcggaggtctct
aggaaaaggagcctgtgctcatcgctggatgggctcggggagccagctct
tggtagctctgaatcagatgatgaattctcctctgaagaaacagactggg
aggaagaagcagctcattatgagaaaaaagggtaccagccaggtaaagtg
ctagctaatcagttaaggaagccaaaagcggctggcgaaaggccagtttg
ctgattgggcctcagggcagtcggcttcaaaggtccgccctatgccggag
tcccccgccctgcgtagttgcgtcaggccctggcgcagaagaggccagtg
cgcagactcatttcattccaggagaaagaacaaggaaaatacaacagggc
atttccgggtctttaaggagccggaggggtggggccgtgtccacgcctcc
gtaagaattactacgattagactggccgaggtcggtcggtaaataacgga
agccgaatggcctaaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106079266_106080442
seq2: B6Ng01-311O16.b_48_1210

seq1  GAATTCACTCTATAGACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCATCACCACCCGTCGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCATCACCACCCGTCGTGG  100

seq1  GTGGTAGGTTATGTCTTAATTCGTTTAAACTTTGTAGAGTCCAATCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGTTATGTCTTAATTCGTTTAAACTTTGTAGAGTCCAATCCTGT  150

seq1  TCTGACAGGTGGGAAGTGAACAGTAAGTCTGATATAAAAATTTATTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGGTGGGAAGTGAACAGTAAGTCTGATATAAAAATTTATTCTTC  200

seq1  CAGGGCGAAAATGTTATTTTACTTTACCTAGAAGGAGAATTGCAGTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCGAAAATGTTATTTTACTTTACCTAGAAGGAGAATTGCAGTGATT  250

seq1  CATTTAAAAATAAAATTGTTATTGCCTTGCCTCTGTGCCTGTTCTCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAAATAAAATTGTTATTGCCTTGCCTCTGTGCCTGTTCTCTCTT  300

seq1  GAATTGCTTAAGTGTTAAATCTATGACCACTGCACTCATGAGACTCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTTAAGTGTTAAATCTATGACCACTGCACTCATGAGACTCTTTA  350

seq1  TATACATTTTTTGGACGTATTATTTTGTTTGTCTTTGTTTTTGTTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTTTTGGACGTATTATTTTGTTTGTCTTTGTTTTTGTTTTTTC  400

seq1  AAGACAGGGCTTTTCTGTATAGCTCTTGTTGTTCTGGAACTCACTCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGGCTTTTCTGTATAGCTCTTGTTGTTCTGGAACTCACTCTGTA  450

seq1  GACCAGGCTGGCCTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGT  500

seq1  GCTGGGATTAAAGGCATGCGCCACCACTGCCCGGCACGTTATTTCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGCATGCGCCACCACTGCCCGGCACGTTATTTCTTTAT  550

seq1  GTATGTTTATCATGCCCTCCTGTAGAGGTTAGAGGCCAACCTCTGGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTATCATGCCCTCCTGTAGAGGTTAGAGGCCAACCTCTGGGAGT  600

seq1  TGGTTTTCTCCTTCCACTATGTAGGTCCTCAGGATGGAATTCTGGTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCTCCTTCCACTATGTAGGTCCTCAGGATGGAATTCTGGTCAGG  650

seq1  CGATTAATCTGTAGAACCATTTTACCAGTCCATTTATGAAACTTTCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTAATCTGTAGAACCATTTTACCAGTCCATTTATGAAACTTTCTAAA  700

seq1  GAAGAAGGAGAGATGTGTGTTATGCTTTATGTTAAAGAGTAGTCTGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAGAGATGTGTGTTATGCTTTATGTTAAAGAGTAGTCTGTACC  750

seq1  AGCAAAGGAGGCTTGGGAGAAGCTGCAATAGAGTAGTCAGGGAAAGCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGAGGCTTGGGAGAAGCTGCAATAGAGTAGTCAGGGAAAGCCCT  800

seq1  TTCTGGTATCTAACAGATATTTAGGCAAGCTAGAAAATGGTGAGAGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTATCTAACAGATATTTAGGCAAGCTAGAAAATGGTGAGAGCATC  850

seq1  TAACCACGGAGGTATCTGGAGAAAGGAATGTTCTGAGCAGGTGGACAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACGGAGGTATCTGGAGAAAGGAATGTTCTGAGCAGGTGGACAGCA  900

seq1  ATCATGAAGGCCTTGAAGGGGACAAAGCTGGGCCTGTTAGAGGAGCAGTG  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCATGAAGGCCTTGAA-GGGACAAAGCTGGGCCTGTTAGAGGAGCAGTG  949

seq1  TGTTTGTAGCACTTAGCAAATGAAGGAATGAGAAGATGAGGATGAAGATG  1000
      ||||||||||||||||| |||||||| ||||| ||||||||||| |||||
seq2  TGTTTGTAGCACTTAGC-AATGAAGG-ATGAG-AGATGAGGATG-AGATG  995

seq1  AGATGAAGGATGAGACCGTAAAGGAAGAAAGGAAAACAAAGCAACTAGGG  1050
      ||||| | |||||||||||||||||||||||  |||| |||| |||||| 
seq2  AGATG-ACGATGAGACCGTAAAGGAAGAAAG--AAAC-AAGC-ACTAGG-  1039

seq1  CCTTGTAG-ACGGTTTTGAAGATTTTGTCCTCATTCTGCATGAAATGGGG  1099
       ||||||| |||||||||||||||||||||||||  |||||||| |||||
seq2  -CTTGTAGAACGGTTTTGAAGATTTTGTCCTCATCTTGCATGAATTGGGG  1088

seq1  CTGTCTGAGCAGAGGAGTGCTAAAT-CTGACTTACATTGTAATTCAGTTC  1148
      ||||||||||||||||||||||||| |||||||||||  | || ||||  
seq2  CTGTCTGAGCAGAGGAGTGCTAAATCCTGACTTACAT--TCATCCAGT--  1134

seq1  CATTCACTGTAATGTAGATTGTGATAATA  1177
      ||||||||| |||||||||||  ||||||
seq2  CATTCACTGGAATGTAGATTGGAATAATA  1163