BAC Information

Click to search

BAC

Clone NameB6Ng01-312C23
Chromosome11 (Build37)
Map Location 8,690,107 - 8,880,692
singlet/doubletdoublet
Overlap geneLOC638720, Pkd1l1, LOC624800
Upstream geneLOC665380, Tns3
Downstream geneHus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312C23.bB6Ng01-312C23.g
ACCGA103716GA103717
length1,1131,159
definitionB6Ng01-312C23.b B6Ng01-312C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,879,586 - 8,880,692)(8,690,107 - 8,691,281)
sequence
gaattccatctgaaacagaattaagtcacagagagcttgtccttgaaaca
gtcctgtgccagggttgtatacttttaatcccttccctgggcctcactcc
atagctctgcctcaggagaggtgcaaggaccgcacccagagagaccccga
gtctgcagtgactggctgggtgctgtggttccagggtctggactccctgg
ccccaggtctccgtcacacggagaattgtcccacagttcctattgttgtt
gtttaggtgcttcagatggagcccagagcttcacccgtgccacccacaat
cgtcaaatattatatcatatttgcattattgttgctggtgttttttgagg
cagggtcttgcctcttgctgtgtagcgcagattgatctcaaatttgtgat
cttcctgcctcagccccctaagtgctagggttaaaggcatgtgccaccac
cctaaatgtttgtgtgtgttgctgctgaagactgaacccagggcctgtgt
atgctggacaagtactttattgctgagcttcctccaagatgggctgccca
gaacttaattacctacatcattacctacatcaattaagaaacggcatgag
tctgggcctttactactaactgatgaagagctgacacatctttcagcatt
ttctctaaaaatgtaaaaatcgttgcttttaaagttcgtgtcagtaagcg
gtgtggccccgactgagaacagaccagtcctttctttacctgtttgggac
acaggaacttggtgacagatcagagaaataaggcattttgcgagcagtgc
atgaagctgtttcatacctaagtggtccatggttagtcgctaaagctcac
tccacacatactgatgtcatgacctcaagctatttcccttcagattgtat
taatacatcagatcttgattgtgaacagaaacatcagccaagatgtttac
attagatttgacattgccctagaaagttggaaacttgggggaccactgag
tccttgccagatggtgctatgaataactaaagggtttgaagtttgatcct
gtcagaatgggcctcgtctcctttctgatcgctttgaactctacctacct
ccgccctttcagc

gaattctccacagctatacaggaagctgaagtcatgacagttttctggaa
tctggggaaatgaatttaagttgaaatcatgttaagccaaccagactcag
agagagagagagagagagagagagacagagacagagacagagacagagag
acagacaaagacagagacagacaaagagagagacagacagagacagagat
ttgcaggtcaaaaatttataaaggggatgaaaagatgggaggactagtac
taatggaggtgggaaataaagggggcaatagagaatacagtctcagcagc
aatgaacatgagtgtctgtcccgccgttctctttacctcgaagcttttgc
tgcaaaattagtggacatgagctggtgggttgtggagatcacagaaagaa
ggagaatcatctgaactcatgtgcaaccctagtaaaaactggcacagctc
ttcaggagactcataagaggaaggtggaaagggagcctaatgtgcaagga
aaggaactagctgcagatggggccgttgtgtgaagggggcggtgtgtgga
ggaggcagcggtagattagaaccagatctgagccatatacagtggcatat
attactttgtatgctaacctacaacaaaacaataatttcaaaaaggatca
caacaaaacaggtttcattagtaggtggtctagatgtatccaaaccttat
caaaaaccagatatttctaccccacttggcaatccttcaaaactcgagaa
aacatctaccctggatcctcggcattagggggctgggcctcacctgcggt
gtctttgtgatctgtgaaatgtgagcacattctacctcttcaaatacatt
tcttctttcctttggcatgtgttcaggatccctaattttatagtctctcc
tactcataactcacactgatttcacctaattacctccaaaggcagcatgt
taacttaccttcaggttctgtttgttttaccaatgaggcagtgtctacag
cagctgggctcagcacaagcagaccagcgtgcttcttgaacatgtttttc
tccaggaatagctttgtagatcctgaaaactgaatgatgggagtctgtgt
aactgtcaaacaacaagtgcagcatggtaagattccatggcctctatgat
ttcaggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_8879586_8880692
seq2: B6Ng01-312C23.b_44_1156 (reverse)

seq1  GCTGAAA-GGCGGA-GTA-GTAGAGTTTAAAGCCGATTCAG-AAGGGGAC  46
      ||||||| |||||| ||| |||||||| |||| ||| |||| |||| |||
seq2  GCTGAAAGGGCGGAGGTAGGTAGAGTTCAAAG-CGA-TCAGAAAGGAGAC  48

seq1  GAGG-CCATTCTGACAGGATCAAAACTTCAAACCCCTTAGTTA-TCATAG  94
      |||| |||||||||||||||| ||||||||||||| ||||||| ||||||
seq2  GAGGCCCATTCTGACAGGATC-AAACTTCAAACCCTTTAGTTATTCATAG  97

seq1  CA-CATCTGGCAAGGACTCAGTG--TCCCCAAGTTTCCAACTTTCTAGGG  141
      || ||||||||||||||||||||   ||||||||||||||||||||||||
seq2  CACCATCTGGCAAGGACTCAGTGGTCCCCCAAGTTTCCAACTTTCTAGGG  147

seq1  CAATGTCAAATCTAATGTAAACATCTTGGCTGATGTTTCTGTTCACAATC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCAAATCTAATGTAAACATCTTGGCTGATGTTTCTGTTCACAATC  197

seq1  AAGATCTGATGTATTAATACAATCTGAAGGGAAATAGCTTGAGGTCATGA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGATGTATTAATACAATCTGAAGGGAAATAGCTTGAGGTCATGA  247

seq1  CATCAGTATGTGTGGAGTGAGCCTTAGCGACTAACCATGGACCACTTAGG  291
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATCAGTATGTGTGGAGTGAGCTTTAGCGACTAACCATGGACCACTTAGG  297

seq1  TATGAAACAGCTTCATGCACTGCTCGCAAAATGCCTTATTTCTCTGATCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACAGCTTCATGCACTGCTCGCAAAATGCCTTATTTCTCTGATCT  347

seq1  GTCACCAAGTTCCTGTGTCCCAAACAGGTAAAGAAAGGACTGGTCTGTTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAAGTTCCTGTGTCCCAAACAGGTAAAGAAAGGACTGGTCTGTTC  397

seq1  TCAGTCGGGGCCACACCGCTTACTGACACGAACTTTAAAAGCAACGATTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCGGGGCCACACCGCTTACTGACACGAACTTTAAAAGCAACGATTT  447

seq1  TTACATTTTTAGAGAAAATGCTGAAAGATGTGTCAGCTCTTCATCAGTTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTTAGAGAAAATGCTGAAAGATGTGTCAGCTCTTCATCAGTTA  497

seq1  GTAGTAAAGGCCCAGACTCATGCCGTTTCTTAATTGATGTAGGTAATGAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAAGGCCCAGACTCATGCCGTTTCTTAATTGATGTAGGTAATGAT  547

seq1  GTAGGTAATTAAGTTCTGGGCAGCCCATCTTGGAGGAAGCTCAGCAATAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAATTAAGTTCTGGGCAGCCCATCTTGGAGGAAGCTCAGCAATAA  597

seq1  AGTACTTGTCCAGCATACACAGGCCCTGGGTTCAGTCTTCAGCAGCAACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGTCCAGCATACACAGGCCCTGGGTTCAGTCTTCAGCAGCAACA  647

seq1  CACACAAACATTTAGGGTGGTGGCACATGCCTTTAACCCTAGCACTTAGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACATTTAGGGTGGTGGCACATGCCTTTAACCCTAGCACTTAGG  697

seq1  GGGCTGAGGCAGGAAGATCACAAATTTGAGATCAATCTGCGCTACACAGC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGGCAGGAAGATCACAAATTTGAGATCAATCTGCGCTACACAGC  747

seq1  AAGAGGCAAGACCCTGCCTCAAAAAACACCAGCAACAATAATGCAAATAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCAAGACCCTGCCTCAAAAAACACCAGCAACAATAATGCAAATAT  797

seq1  GATATAATATTTGACGATTGTGGGTGGCACGGGTGAAGCTCTGGGCTCCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATATTTGACGATTGTGGGTGGCACGGGTGAAGCTCTGGGCTCCA  847

seq1  TCTGAAGCACCTAAACAACAACAATAGGAACTGTGGGACAATTCTCCGTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCACCTAAACAACAACAATAGGAACTGTGGGACAATTCTCCGTG  897

seq1  TGACGGAGACCTGGGGCCAGGGAGTCCAGACCCTGGAACCACAGCACCCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGAGACCTGGGGCCAGGGAGTCCAGACCCTGGAACCACAGCACCCA  947

seq1  GCCAGTCACTGCAGACTCGGGGTCTCTCTGGGTGCGGTCCTTGCACCTCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCACTGCAGACTCGGGGTCTCTCTGGGTGCGGTCCTTGCACCTCT  997

seq1  CCTGAGGCAGAGCTATGGAGTGAGGCCCAGGGAAGGGATTAAAAGTATAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGCAGAGCTATGGAGTGAGGCCCAGGGAAGGGATTAAAAGTATAC  1047

seq1  AACCCTGGCACAGGACTGTTTCAAGGACAAGCTCTCTGTGACTTAATTCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGCACAGGACTGTTTCAAGGACAAGCTCTCTGTGACTTAATTCT  1097

seq1  GTTTCAGATGGAATTC  1107
      ||||||||||||||||
seq2  GTTTCAGATGGAATTC  1113


seq1: chr11_8690107_8691281
seq2: B6Ng01-312C23.g_65_1223

seq1  GAATTCTCCACAGCTATACAGGAAGCTGAAGTCATGACAGTTTTCTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACAGCTATACAGGAAGCTGAAGTCATGACAGTTTTCTGGAA  50

seq1  TCTGGGGAAATGAATTTAAGTTGAAATCATGTTAAGCCAACCAGACTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAAATGAATTTAAGTTGAAATCATGTTAAGCCAACCAGACTCAG  100

seq1  AGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGAG  150

seq1  ACAGACAAAGACAGAGACAGACAAAGAGAGAGACAGACAGAGACAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAAGACAGAGACAGACAAAGAGAGAGACAGACAGAGACAGAGAT  200

seq1  TTGCAGGTCAAAAATTTATAAAGGGGATGAAAAGATGGGAGGACTAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTCAAAAATTTATAAAGGGGATGAAAAGATGGGAGGACTAGTAC  250

seq1  TAATGGAGGTGGGAAATAAAGGGGGCAATAGAGAATACAGTCTCAGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGGTGGGAAATAAAGGGGGCAATAGAGAATACAGTCTCAGCAGC  300

seq1  AATGAACATGAGTGTCTGTCCCGCCGTTCTCTTTACCTCGAAGCTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACATGAGTGTCTGTCCCGCCGTTCTCTTTACCTCGAAGCTTTTGC  350

seq1  TGCAAAATTAGTGGACATGAGCTGGTGGGTTGTGGAGATCACAGAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATTAGTGGACATGAGCTGGTGGGTTGTGGAGATCACAGAAAGAA  400

seq1  GGAGAATCATCTGAACTCATGTGCAACCCTAGTAAAAACTGGCACAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCATCTGAACTCATGTGCAACCCTAGTAAAAACTGGCACAGCTC  450

seq1  TTCAGGAGACTCATAAGAGGAAGGTGGAAAGGGAGCCTAATGTGCAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGACTCATAAGAGGAAGGTGGAAAGGGAGCCTAATGTGCAAGGA  500

seq1  AAGGAACTAGCTGCAGATGGGGCCGTTGTGTGAAGGGGGCGGTGTGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTAGCTGCAGATGGGGCCGTTGTGTGAAGGGGGCGGTGTGTGGA  550

seq1  GGAGGCAGCGGTAGATTAGAACCAGATCTGAGCCATATACAGTGGCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGCGGTAGATTAGAACCAGATCTGAGCCATATACAGTGGCATAT  600

seq1  ATTACTTTGTATGCTAACCTACAACAAAACAATAATTTCAAAAAGGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTGTATGCTAACCTACAACAAAACAATAATTTCAAAAAGGATCA  650

seq1  CAACAAAACAGGTTTCATTAGTAGGTGGTCTAGATGTATCCAAACCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAACAGGTTTCATTAGTAGGTGGTCTAGATGTATCCAAACCTTAT  700

seq1  CAAAAACCAGATATTTCTACCCCACTTGGCAATCCTTCAAAACTCGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCAGATATTTCTACCCCACTTGGCAATCCTTCAAAACTCGAGAA  750

seq1  AACATCTACCCTGGATCCTCGGCATTAGGGGGCTGGGCCTCACCTGCGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTACCCTGGATCCTCGGCATTAGGGGGCTGGGCCTCACCTGCGGT  800

seq1  GTCTTTGTGATCTGTGAAATGTGAGCACATTCTACCTCTTCAAATACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTGATCTGTGAAATGTGAGCACATTCTACCTCTTCAAATACATT  850

seq1  TCTTCTTTCCTTTGGCATGTGTTCAGGATCCCTAATTTTATAGTCTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCCTTTGGCATGTGTTCAGGATCCCTAATTTTATAGTCTCTCC  900

seq1  TACTCATAACTCACACTGATTTCACCTAATTACCTCCAAAGGCAGCATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATAACTCACACTGATTTCACCTAATTACCTCCAAAGGCAGCATGT  950

seq1  TAACTTACCTCAAGGTTCTGTTTGTTTTACCAAATGAGGCCAGTGTCTAC  1000
      ||||||||||  ||||||||||||||||||| ||||||| ||||||||||
seq2  TAACTTACCTTCAGGTTCTGTTTGTTTTACC-AATGAGG-CAGTGTCTAC  998

seq1  AGCAGCTGGGCTCCAAGCAC-AGCAGACCCAGGCCGTGGCCTTCTTGACA  1049
      |||||||||||||  ||||| |||||| ||||  ||||  ||||||||  
seq2  AGCAGCTGGGCTC--AGCACAAGCAGA-CCAG--CGTG--CTTCTTGAAC  1041

seq1  ATG-TTTTCTCCAAAGATAAGCTTTGTAAGAATCCCTGAAAACTG-ATGA  1097
      ||| |||||||| | ||  |||||||| |||   ||||||||||| ||||
seq2  ATGTTTTTCTCC-AGGAATAGCTTTGT-AGA--TCCTGAAAACTGAATGA  1087

seq1  TTGGAGTCTGTGTTACTGTAAAAACACACAAAGTGCAGCAATTTGTAAAA  1147
      | ||||||||||| ||||| ||   |||  ||||||||||  | ||||  
seq2  TGGGAGTCTGTGTAACTGTCAA---ACAACAAGTGCAGCA--TGGTAA--  1130

seq1  AGAATTCCATGG-CTC-ATGA-TTCAGGAAA  1175
         ||||||||| ||| |||| |||||||||
seq2  --GATTCCATGGCCTCTATGATTTCAGGAAA  1159


| Home | SequenceCutter | Blast | Download |