BAC Information

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BAC

Clone NameB6Ng01-314A20
Chromosome11 (Build37)
Map Location 100,978,806 - 101,153,057
singlet/doubletdoublet
Overlap gene1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1
Upstream geneKrt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip
Downstream genePsme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314A20.bB6Ng01-314A20.g
ACCGA105098GA105099
length1,132189
definitionB6Ng01-314A20.b B6Ng01-314A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,151,928 - 101,153,057)(100,978,806 - 100,978,994)
sequence
gaattcagtgactctcaggcttctactttggcattgaagcagatggaaaa
gatgttgccttgggtgttttggggcattcatttaaaatgccaaggggagc
ttaggtatattcgtctgaagaaaaggagagggattgaggctaggcttcgg
tgaaagtgggaataatcaagttttataatcttttttcccctgaccttttc
tttctctgtaggcacagcggacagtttggcacaatcaataatttcagact
gggtcgcttgcccagtgttcctgtggagtggaatgaaatcaatgctgcct
ggggccagacagtgctgctgctccatgctttggccaataagatgggtctg
aagtttcagaggtgagaaaacgcagctcttccgtagcaccctgggtaaag
tgtgtctttaacgtaatctgtttattcgcctggtactgctccactgtggc
atgaaggcttgctgccagcagatagactgccgtgggtgaagggcctatgt
gtggtttcccatctcataggacccttgcctgtgataccatgcagcggtct
tcaacgggcatgactctagcagagatctccaacagtctccagaacctaat
ttttcccctaaaaaagtttcagtttttggttttaaaactctaacagggta
tgatattgtggtctacaaatgtgtgaagcctcattcacagctatcctggg
acaaaggcaacctacaggccgaaagttatatgcacagtctaaaccagaaa
tactagcatggtgtcaaatccctgtaatcctagtgttgaagctaaggcag
gcaggaggatgaaaagttcacagtcagctggcctgcacagggagacgctg
tcgttcaaaaattaaagcaaaagtaagctacaacatatgaactaatgagc
cctcccctgctgctatcgaccagatgggatcattgaagacgttaaacatg
gactctgtaggagctggagtggggaaacagtaaagtctctgggtaagatg
tagatgtagattggaaaatgaatggttgcagtcgagtggtgctgctcaca
tcttttatcccagcacttggaaggcagatgggatctcctggaggccagcc
tggtctacagaacaaggttcaggacaggcagg
ttttatgaacctcctgtgtttagaaagtaagagggcatagtcacaggtac
agggaaaactacaccagagaaggaatgtacatcactaaacacactatgtg
ccctgaatttggaggacttgggaaaaaaaaaattctttcagagagagaga
gagagagagagagagagagagacagagggggggggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101151928_101153057
seq2: B6Ng01-314A20.b_45_1176 (reverse)

seq1  CCTGGCTGTCCTGGAACTTGTTCTGTAGACCAGGCTGGCCT-CAAGAGAT  49
      |||| |||||||| | ||||||||||||||||||||||||| || |||||
seq2  CCTGCCTGTCCTGAACCTTGTTCTGTAGACCAGGCTGGCCTCCAGGAGAT  50

seq1  -CCATCTGCC-TCCAAGTGCTGGGAT-AAAGATGTGAGCAACCACCACTC  96
       ||||||||| ||||||||||||||| |||||||||||| | ||||||||
seq2  CCCATCTGCCTTCCAAGTGCTGGGATAAAAGATGTGAGC-AGCACCACTC  99

seq1  GACTGCAACCCATTCATTTT-CAATCTACATCTACATCTTACCCAGAGAC  145
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  GACTGCAA-CCATTCATTTTCCAATCTACATCTACATCTTACCCAGAGAC  148

seq1  TTTACTGTTTCCCCACTCCCAGCTCCTACAGAGTCCATGTTTAACGTCTT  195
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTACTGTTTCCCCACT-CCAGCTCCTACAGAGTCCATGTTTAACGTCTT  197

seq1  CAATGATCCCATCTGGTCGATAGCAGCAGGGGAGGGCTCATTAGTTCATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATCCCATCTGGTCGATAGCAGCAGGGGAGGGCTCATTAGTTCATA  247

seq1  TGTTGTAGCTTACTTTTGCTTTAATTTTTGAACGACAGCGTCTCCCTGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGCTTACTTTTGCTTTAATTTTTGAACGACAGCGTCTCCCTGTG  297

seq1  CAGGCCAGCTGACTGTGAACTTTTCATCCTCCTGCCTGCCTTAGCTTCAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCTGACTGTGAACTTTTCATCCTCCTGCCTGCCTTAGCTTCAA  347

seq1  CACTAGGATTACAGGGATTTGACACCATGCTAGTATTTCTGGTTTAGACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGATTACAGGGATTTGACACCATGCTAGTATTTCTGGTTTAGACT  397

seq1  GTGCATATAACTTTCGGCCTGTAGGTTGCCTTTGTCCCAGGATAGCTGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATAACTTTCGGCCTGTAGGTTGCCTTTGTCCCAGGATAGCTGTG  447

seq1  AATGAGGCTTCACACATTTGTAGACCACAATATCATACCCTGTTAGAGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGCTTCACACATTTGTAGACCACAATATCATACCCTGTTAGAGTT  497

seq1  TTAAAACCAAAAACTGAAACTTTTTTAGGGGAAAAATTAGGTTCTGGAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCAAAAACTGAAACTTTTTTAGGGGAAAAATTAGGTTCTGGAGA  547

seq1  CTGTTGGAGATCTCTGCTAGAGTCATGCCCGTTGAAGACCGCTGCATGGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGAGATCTCTGCTAGAGTCATGCCCGTTGAAGACCGCTGCATGGT  597

seq1  ATCACAGGCAAGGGTCCTATGAGATGGGAAACCACACATAGGCCCTTCAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGCAAGGGTCCTATGAGATGGGAAACCACACATAGGCCCTTCAC  647

seq1  CCACGGCAGTCTATCTGCTGGCAGCAAGCCTTCATGCCACAGTGGAGCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGCAGTCTATCTGCTGGCAGCAAGCCTTCATGCCACAGTGGAGCAG  697

seq1  TACCAGGCGAATAAACAGATTACGTTAAAGACACACTTTACCCAGGGTGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGCGAATAAACAGATTACGTTAAAGACACACTTTACCCAGGGTGC  747

seq1  TACGGAAGAGCTGCGTTTTCTCACCTCTGAAACTTCAGACCCATCTTATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGAAGAGCTGCGTTTTCTCACCTCTGAAACTTCAGACCCATCTTATT  797

seq1  GGCCAAAGCATGGAGCAGCAGCACTGTCTGGCCCCAGGCAGCATTGATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGCATGGAGCAGCAGCACTGTCTGGCCCCAGGCAGCATTGATTT  847

seq1  CATTCCACTCCACAGGAACACTGGGCAAGCGACCCAGTCTGAAATTATTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCACTCCACAGGAACACTGGGCAAGCGACCCAGTCTGAAATTATTG  897

seq1  ATTGTGCCAAACTGTCCGCTGTGCCTACAGAGAAAGAAAAGGTCAGGGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCCAAACTGTCCGCTGTGCCTACAGAGAAAGAAAAGGTCAGGGGA  947

seq1  AAAAAGATTATAAAACTTGATTATTCCCACTTTCACCGAAGCCTAGCCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATTATAAAACTTGATTATTCCCACTTTCACCGAAGCCTAGCCTC  997

seq1  AATCCCTCTCCTTTTCTTCAGACGAATATACCTAAGCTCCCCTTGGCATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTCTCCTTTTCTTCAGACGAATATACCTAAGCTCCCCTTGGCATT  1047

seq1  TTAAATGAATGCCCCAAAACACCCAAGGCAACATCTTTTCCATCTGCTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAATGCCCCAAAACACCCAAGGCAACATCTTTTCCATCTGCTTC  1097

seq1  AATGCCAAAGTAGAAGCCTGAGAGTCACTGAATTC  1130
      |||||||||||||||||||||||||||||||||||
seq2  AATGCCAAAGTAGAAGCCTGAGAGTCACTGAATTC  1132

seq1: chr11_100978806_100978994
seq2: B6Ng01-314A20.g_73_261

seq1  TTTTATGAACCTCCTGTGTTTAGAAAGTAAGAGGGCATAGTCACAGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAACCTCCTGTGTTTAGAAAGTAAGAGGGCATAGTCACAGGTAC  50

seq1  AGGGAAAACTACACCAGAGAAGGAATGTACATCACTAAACACACTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAACTACACCAGAGAAGGAATGTACATCACTAAACACACTATGTG  100

seq1  CCCTGAATTTGGAGGACTTGGGAAAAAAAAAATTCTTTCAGAGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATTTGGAGGACTTGGGAAAAAAAAAATTCTTTCAGAGAGAGAGA  150

seq1  GAGAGAGAGAGAGAGAGAGAGACAGAGGGGGGGGGAGTG  189
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGACAGAGGGGGGGGGAGTG  189