BAC Information

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BAC

Clone NameB6Ng01-314J02
Chromosome11 (Build37)
Map Location 68,836,288 - 68,837,338
singlet/doubletsinglet
Overlap gene1500010J02Rik
Upstream geneStx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas
Downstream geneAurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314J02.bB6Ng01-314J02.g
ACCGA105460GA105461
length8691,058
definitionB6Ng01-314J02.b B6Ng01-314J02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgcctaccacgttgtgtgccatctgtagcagtaactagttaat
ctgctctgagctcccagtgggtggccactcatcagagtcctctggatttg
ttcatgaaaacacacacacacacacacacacacacacacacacacaccct
ttatattttgttacaccttgactagctcactgatcagacacttccaagcc
tcctcacagctagcacacacgcgtctctggtattcctgagttaatacttt
ctaaatggagattttatccttgctgcctggttccttcctggcagccctct
cttggggccacttcccctttgcacctacatttccaccacctcaccctccg
gctccttcacagcatggtccctgtgccactctggtggcagaatccctttt
tttcctcccctgtgtttcttgcccaggaatcctaaaagtccctcctcttt
cactctgcccagccatttggccactggttctttattgacccatccaaacc
tttggcggggacttgcagcagatgtgggaattcccacgtaagcatggatc
aaacccgaacacaccactattgcctggctgaaagtgttatattcttgaca
gtctgctccctacactctagttaagtctaagaagtttctgtctatactag
atactaaatgtgaacagacatgtttgtgtgtgattggtccttgacaatga
gtgtgactactatttacatggcattaacattgaagtaggtattaagagta
attaattaatggcttaaattacatgggaggaggagcattggttctatgca
aatccaataccacttcccatatttgggtgtgagcatcctagtgttctggt
gtggggggtggggggggaa
gaattccttgggggaagggcacttggaactatggggtacaccggtgccag
tatttcctttgactgtcagtcctggccctctcatacctatccctgtcctc
tacccagaaaaggcgtcccacctgctcagatacaggtaattttccactct
taggaaagaaaggaacactgagagatttgagaatgatggtacttaccgtg
gcggaagacatattgatagtgatacagataatagatggaacaagggagca
atgggatttgagtatcaggaaagttatgaggaaggcttggagctggttgt
ggttcacctctagaatcccagcattcaggacactgaagcaggaaggctgt
ggagcctacagtgcgttccaggttagtcagtgctgcagtgggagaccctt
tctcaaaagatggaaaaaataggttggagagatggttcgctggttaagag
cactgtctgctcttccagaggacctgggtttggttcctggcgccatcatg
gtggtttacagccatctgtattcccagttctaggggacccaacacccttt
tttagcttccctatgtaccaggcatgtggtggacagacatatatccagga
gaagcattcatacacacaaaataagattttttttcaagacatggttcctc
tgtgtagtacttactgactgtccggaactcactatgtacaacaggctggc
ctcgaactcagaaatcctcctgcctctgcctcccaagtgctgggattaaa
ggcgtgtgccaccacgccctgctgataacttttttttaatagaaaaaaac
ccaccagattcttttttgaatatgtatgtgtacatacatgatgtgttgat
caagcttcagtgccatttcctcaaacagtagggaaataggcccctcattg
gcgtgagtggtcgcagagtcccacgcgtgtcacgtccaccaacagggatt
tttgtcatcacgctgggccttttcaagtggttctggccattagagctgta
tttagaagtcagacagcaccttctctcccttgttccccaagaagggtttt
gtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68836288_68837338
seq2: B6Ng01-314J02.g_67_1124

seq1  GAATTCCTTGGGGGAAGGGCACTTGGAACTATGGGGTACACCGGTGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGGGGAAGGGCACTTGGAACTATGGGGTACACCGGTGCCAG  50

seq1  TATTTCCTTTGACTGTCAGTCCTGGCCCTCTCATACCTATCCCTGTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTTTGACTGTCAGTCCTGGCCCTCTCATACCTATCCCTGTCCTC  100

seq1  TACCCAGAAAAGGCGTCCCACCTGCTCAGATACAGGTAATTTTCCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAAAAGGCGTCCCACCTGCTCAGATACAGGTAATTTTCCACTCT  150

seq1  TAGGAAAGAAAGGAACACTGAGAGATTTGAGAATGATGGTACTTACCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGAAAGGAACACTGAGAGATTTGAGAATGATGGTACTTACCGTG  200

seq1  GCGGAAGACATATTGATAGTGATACAGATAATAGATGGAACAAGGGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAGACATATTGATAGTGATACAGATAATAGATGGAACAAGGGAGCA  250

seq1  ATGGGATTTGAGTATCAGGAAAGTTATGAGGAAGGCTTGGAGCTGGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTTGAGTATCAGGAAAGTTATGAGGAAGGCTTGGAGCTGGTTGT  300

seq1  GGTTCACCTCTAGAATCCCAGCATTCAGGACACTGAAGCAGGAAGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACCTCTAGAATCCCAGCATTCAGGACACTGAAGCAGGAAGGCTGT  350

seq1  GGAGCCTACAGTGCGTTCCAGGTTAGTCAGTGCTGCAGTGGGAGACCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTACAGTGCGTTCCAGGTTAGTCAGTGCTGCAGTGGGAGACCCTT  400

seq1  TCTCAAAAGATGGAAAAAATAGGTTGGAGAGATGGTTCGCTGGTTAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAGATGGAAAAAATAGGTTGGAGAGATGGTTCGCTGGTTAAGAG  450

seq1  CACTGTCTGCTCTTCCAGAGGACCTGGGTTTGGTTCCTGGCGCCATCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTGCTCTTCCAGAGGACCTGGGTTTGGTTCCTGGCGCCATCATG  500

seq1  GTGGTTTACAGCCATCTGTATTCCCAGTTCTAGGGGACCCAACACCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTACAGCCATCTGTATTCCCAGTTCTAGGGGACCCAACACCCTTT  550

seq1  TTTAGCTTCCCTATGTACCAGGCATGTGGTGGACAGACATATATCCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTCCCTATGTACCAGGCATGTGGTGGACAGACATATATCCAGGA  600

seq1  GAAGCATTCATACACACAAAATAAGATTTTTTTTCAAGACATGGTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTCATACACACAAAATAAGATTTTTTTTCAAGACATGGTTCCTC  650

seq1  TGTGTAGTACTTACTGACTGTCCGGAACTCACTATGTACAACAGGCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTACTTACTGACTGTCCGGAACTCACTATGTACAACAGGCTGGC  700

seq1  CTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  750

seq1  GGCGTGTGCCACCACGCCCTGCTGATAAC-TTTTTTTAATAGAAAAAAAC  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCGTGTGCCACCACGCCCTGCTGATAACTTTTTTTTAATAGAAAAAAAC  800

seq1  CCACCAGATTC-TTTTTGAATATGTATGTGTACATACATGATGTGTTGAT  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGATTCTTTTTTGAATATGTATGTGTACATACATGATGTGTTGAT  850

seq1  CAAGCTTCAGTGCCA-TTCCTCAAACAGTAGGGAAATAGGCCCCTCATTG  897
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAGCTTCAGTGCCATTTCCTCAAACAGTAGGGAAATAGGCCCCTCATTG  900

seq1  GCGTGAGTGGTCGCAGAGTCCCACGCGTGTCACGTCCACC-ACAGGGA-T  945
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  GCGTGAGTGGTCGCAGAGTCCCACGCGTGTCACGTCCACCAACAGGGATT  950

seq1  TATGTCATCACGCT-GGCCTTTTCAAAGGTGGTTCTGG-CAATAGAGCTT  993
      | |||||||||||| |||||||||||  |||||||||| || |||||| |
seq2  TTTGTCATCACGCTGGGCCTTTTCAA--GTGGTTCTGGCCATTAGAGC-T  997

seq1  GTATTTAGAAGTCAGACAAGCAC--TCTCTCCC-TGGTCCCCAAG-AGGG  1039
      ||||||||||||||||| |||||  |||||||| || |||||||| ||||
seq2  GTATTTAGAAGTCAGAC-AGCACCTTCTCTCCCTTGTTCCCCAAGAAGGG  1046

seq1  TTTTGTGTGTGT  1051
      ||||||||||||
seq2  TTTTGTGTGTGT  1058