BAC Information

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BAC

Clone NameB6Ng01-314M07
Chromosome11 (Build37)6 (Build37)
Map Location 50,852,616 - 50,853,780115,869,115 - 115,869,452
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54
Downstream geneOlfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314M07.bB6Ng01-314M07.g
ACCGA105597GA105598
length1,128958
definitionB6Ng01-314M07.b B6Ng01-314M07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,852,616 - 50,853,780)(115,869,115 - 115,869,452)
sequence
gaattcagatcagctcagacagttggatagaatgagatagttggaactgg
ggagttgttctgtcccctatgacatctaggtctgaggcaagcatgctaca
ggaatggactggggttttgagcctgggtttccaggttcctatatccttgt
ataaaattatggacagagacatgtgcatggtagcagaagagaagatggtc
tggtgaaggagaaagggacttccaaatggggcaactggccagggctggcg
aaagctcaaaggctcaatgacaccaggtaaacttaaacatttgcacaaaa
catggtttttcagcgcatgttatgtttcatgtcagccctgtgtgttctct
gtccttgctttctttcatttgataaagttctgtggtgctgatcctcaaac
ccagtgccttgtgcattcgagaacagtacttaaccaccgaatcattccct
ctgtcctctccctccatcctactcacctattactctccccttggtcacaa
tgtgactttagttagtgatcgaagggcctgatattctttacttcattccc
ttagtgttctgtgtggtagtgactgtgatcaaataaagtgtgggacagcc
aggtagttgtaacccttgacttccgtttaccaggatggagtcagacactg
taagcacaccctccccttgttttccactattgtcacccacacggggtgag
gggaaaaactgagaagagccatccatctgctcaaattctagattaaacag
gagccagggtgggtgcaggagcaccagcttccgctgatgttgtctgctcc
atagtgcagaggatgggatgtggagagcagagggggctcctctggatgga
caaggttctgatcaccagaagtgtgctaatgtctctcttgagattattaa
atgatggtaggtatgctgacttctaaagaaaatatttttaaatgttttta
tcatgtggtattgtctatacgttttccctgaagcaatcaccatgtgcttg
gagactcttaaaaaaagatctatttattttacttgagaatacactgtcac
ggcctcgtactaccgaagagggcatcgaaccttatagatgttgtagccat
ggtcgcatgactgaactggagaaatgtc
gaattctcttgtcttggggtgaccagatctaggggtacagaatttagcgt
ttgaacacgtaggagcaccagactaaccccaacagatgtgtttgtctttc
tcttcagtctgaagaattccttaaatatctttgtagagctagcttagtgg
ccacgaactaattaagcctgtttttctcattaaaggttttcctttctccc
tcagttggcaccgacagctttggtgggcagagtaacctaggctggcaatt
gtcttttaaaaacttgagatatattattcagtgccctcctggcttctaca
gtttctgttgcgaaccctgtggttactctgacgggcctgactttctgcat
accatagttactccttctactgctgtgtatcaatatttctatccatagct
acatgttggttgagtattcggtgagctgataacagtgaggggaaagtctt
ctttgctcttgtctggttagtgttctaaatgcatgtgtatctggaggagc
acttccttgtctgttaggaaacgtggttttatgcttctagaaaggaattc
cttccttcttttatacccacaattgttagattagctcttctcatggtgtc
ccaaatgtcttgaaaacacagcccgaatcttttttttttcccaagacaag
gtttctctgtgaagccctggctgtcctggaactcactctgtagaccaggt
tgtcctcgaactcagaaatccgcctgcctctgcctcccgagtgctaggat
taaaggcgtgcgtcaccattgcccggccagccggaatcttttaatcattc
atctttgtcctcattgagatgctcatattctccaacactgtcaagtctac
aggttggcgggacttcactcggagattttgtgttgactttttgtgatttt
cactcatttctagtagtttgggtttttcttagtacttctatctctgtaaa
aacattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50852616_50853780
seq2: B6Ng01-314M07.b_48_1175

seq1  GAATTCAGATCAGCTCAGACAGTTGGATAGAATGAGATAGTTGGAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCAGCTCAGACAGTTGGATAGAATGAGATAGTTGGAACTGG  50

seq1  GGAGTTGTTCTGTCCCCTATGACATCTAGGTCTGAGGCAAGCATGCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGTTCTGTCCCCTATGACATCTAGGTCTGAGGCAAGCATGCTACA  100

seq1  GGAATGGACTGGGGTTTTGAGCCTGGGTTTCCAGGTTCCTATATCCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGACTGGGGTTTTGAGCCTGGGTTTCCAGGTTCCTATATCCTTGT  150

seq1  ATAAAATTATGGACAGAGACATGTGCATGGTAGCAGAAGAGAAGATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTATGGACAGAGACATGTGCATGGTAGCAGAAGAGAAGATGGTC  200

seq1  TGGTGAAGGAGAAAGGGACTTCCAAATGGGGCAACTGGCCAGGGCTGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGGAGAAAGGGACTTCCAAATGGGGCAACTGGCCAGGGCTGGCG  250

seq1  AAAGCTCAAAGGCTCAATGACACCAGGTAAACTTAAACATTTGCACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCAAAGGCTCAATGACACCAGGTAAACTTAAACATTTGCACAAAA  300

seq1  CATGGTTTTTCAGCGCATGTTATGTTTCATGTCAGCCCTGTGTGTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTTTCAGCGCATGTTATGTTTCATGTCAGCCCTGTGTGTTCTCT  350

seq1  GTCCTTGCTTTCTTTCATTTGATAAAGTTCTGTGGTGCTGATCCTCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGCTTTCTTTCATTTGATAAAGTTCTGTGGTGCTGATCCTCAAAC  400

seq1  CCAGTGCCTTGTGCATTCGAGAACAGTACTTAACCACCGAATCATTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCTTGTGCATTCGAGAACAGTACTTAACCACCGAATCATTCCCT  450

seq1  CTGTCCTCTCCCTCCATCCTACTCACCTATTACTCTCCCCTTGGTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTCCCTCCATCCTACTCACCTATTACTCTCCCCTTGGTCACAA  500

seq1  TGTGACTTTAGTTAGTGATCGAAGGGCCTGATATTCTTTACTTCATTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTTAGTTAGTGATCGAAGGGCCTGATATTCTTTACTTCATTCCC  550

seq1  TTAGTGTTCTGTGTGGTAGTGACTGTGATCAAATAAAGTGTGGGACAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTTCTGTGTGGTAGTGACTGTGATCAAATAAAGTGTGGGACAGCC  600

seq1  AGGTAGTTGTAACCCTTGACTTCCGTTTACCAGGATGGAGTCAGACACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTTGTAACCCTTGACTTCCGTTTACCAGGATGGAGTCAGACACTG  650

seq1  TAAGCACACCCTCCCCTTGTTTTCCACTATTGTCACCCACACGGGGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACACCCTCCCCTTGTTTTCCACTATTGTCACCCACACGGGGTGAG  700

seq1  GGGAAAAACTGAGAAGAGCCATCCATCTGCTCAAATTCTAGATTAAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAACTGAGAAGAGCCATCCATCTGCTCAAATTCTAGATTAAACAG  750

seq1  GAGCCAGGGTGGGTGCAGGAGCACCAGCTTCCGCTGATGTTGTCTGCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGGTGGGTGCAGGAGCACCAGCTTCCGCTGATGTTGTCTGCTCC  800

seq1  ATAGTGCAGAGGATGGGATGTGGAGAGCAGGAGGGGGCTCCTCTGGATGG  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAGTGCAGAGGATGGGATGTGGAGAGCA-GAGGGGGCTCCTCTGGATGG  849

seq1  ACAAGGTTCTGATCAACCAGAAAGTGTGCTAATGTCTCTCTTGAGATTAT  900
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  ACAAGGTTCTGATC-ACCAG-AAGTGTGCTAATGTCTCTCTTGAGATTAT  897

seq1  TAAATGATGGTAGGTAATGCTGACTTCTAAAGAAAATATTTTTTAAATTG  950
      ||||||||||||||| |||||||||||||||||||||| |||||||||  
seq2  TAAATGATGGTAGGT-ATGCTGACTTCTAAAGAAAATA-TTTTTAAAT--  943

seq1  TTTTTTATCATGTGGTATTGTCTATACGTTTTCCCTGTAAGCCAATCACC  1000
       |||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  GTTTTTATCATGTGGTATTGTCTATACGTTTTCCCTG-AAG-CAATCACC  991

seq1  ATGTGCCT-GAGACTCTTAAAAAAAAGATCTATTTATTTTACTTGTATGA  1049
      |||||| | ||||||||| ||||||||||||||||||||||||||   ||
seq2  ATGTGCTTGGAGACTCTT-AAAAAAAGATCTATTTATTTTACTTG--AGA  1038

seq1  GTACACTGTCACTGTCTTCTGACATAACAGAAGAGGGCATCAGAACCTAT  1099
       ||||||||||| | ||  |   |  || |||||||||||| |||||  |
seq2  ATACACTGTCACGGCCTCGT---ACTACCGAAGAGGGCATC-GAACC--T  1082

seq1  TATAGATGGTTGTAAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGAC  1149
      ||||||| ||||| |||||     |||| ||  |  | ||||||      
seq2  TATAGAT-GTTGT-AGCCA-----TGGTCGCATG--ACTGAACT------  1117

seq1  CTCTGGAAGAAATGTC  1165
           | |||||||||
seq2  -----GGAGAAATGTC  1128

seq1: chr6_115869115_115869452
seq2: B6Ng01-314M07.g_359_832 (reverse)

seq1  GGTG-CGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGAT  49
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTGACGCACGCCTTTAATCCTAGCACTCGGGAGGCAGAGGCAGGCGGAT  50

seq1  TTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA  99
      |||||||||||||| || ||||||||||| ||||||||||||||||||||
seq2  TTCTGAGTTCGAGGACAACCTGGTCTACAGAGTGAGTTCCAGGACAGCCA  100

seq1  GGGCTACACAGAGAAACCCTGTCTCAGAAAAACAACAA------------  137
      ||||| |||||||||||| |||||  | |||| || ||            
seq2  GGGCTTCACAGAGAAACCTTGTCTTGGGAAAAAAAAAAGATTCGGGCTGT  150

seq1  -----CAAAAAAAAT------------AAATAAATAAATTAA-AATTAAA  169
           ||| | |  |             || |  |||  ||| ||||   
seq2  GTTTTCAAGACATTTGGGACACCATGAGAAGAGCTAATCTAACAATTGTG  200

seq1  G--AAAAAAGAAGGCAG------------AGAGGGACACA--GATTTTTC  203
      |  | ||||||||| ||            ||| | | | |   |  ||||
seq2  GGTATAAAAGAAGGAAGGAATTCCTTTCTAGAAGCATAAAACCACGTTTC  250

seq1  CT-----GCGGCTCATTGCTTCTTC-CCTAGAGAAGCATTGGTGAC----  243
      ||      |     | |||| || |   || | | |||||    ||    
seq2  CTAACAGACAAGGAAGTGCTCCTCCAGATACACATGCATTTAGAACACTA  300

seq1  -CCAGACTATTGC----------TTCCC----------TAGGC---CTG-  268
       |||||| |  ||          |||||          |  ||   | | 
seq2  ACCAGACAAGAGCAAAGAAGACTTTCCCCTCACTGTTATCAGCTCACCGA  350

seq1  -GACTCTTCCAGC----------------------TCACACCCAGGAG-A  294
        ||||  ||| |                      | | || ||| || |
seq2  ATACTCAACCAACATGTAGCTATGGATAGAAATATTGATACACAGCAGTA  400

seq1  GCACGAGTTTCT--------------TTCAGTTCCTGGAG----------  320
      | | ||||  ||               ||||  ||   ||          
seq2  GAAGGAGTAACTATGGTATGCAGAAAGTCAGGCCCGTCAGAGTAACCACA  450

seq1  ------CCAACAGAAACTGTAGAA  338
             |||||||||||||||||
seq2  GGGTTCGCAACAGAAACTGTAGAA  474