BAC Information

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BAC

Clone NameB6Ng01-315K20
Chromosome11 (Build37)
Map Location 38,602,853 - 38,672,325
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315K20.bB6Ng01-315K20.g
ACCGA106259GA106260
length1,091770
definitionB6Ng01-315K20.b B6Ng01-315K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,602,853 - 38,603,946)(38,671,556 - 38,672,325)
sequence
gaattcagagaaggataacaggagggactcaatgggagacatttaaaaca
tccagcatggggtggtattgatggaagagaggaattcagagaaggataac
aaggagggactcaatggaaaacatttaagacatccagcaagggatggtat
ggttctattatgtaatggtacaattgagaactactggaactgtttgtaat
gataagcatttcataatgtatcattaaatatttccacctcccatttacct
tattctttatcatttctaatgtatacttgaacagttaattgtacattgat
gggtattttctgttttataagataatttatttctgaaccctattgagaac
atcttgagggtaaggccagacagatatatttttgtatttttcatattgcc
caagacattttatatgtgatatagattagtgatggtaattactaatgcta
atcatgccctatggactgagctatcagttttgaatgcattatttaactta
atctttaaaacaaacccatgcagaaaacttaatttttagtttctagatag
aaaaaaaaattaatttccccaagccaagtgactccttcagaatgtattta
tttccaaatattattgcagaaataaaacctcaaatctggttgagaactgt
attgggtaaggttttgcagaatttatatgaatagtgttttcatgatactg
cagccttttggcctctttgctgtggttaatcatggttcttttcattgtat
cagaatcgcactttggtcttctagcgtcgtttggagctcatttgtgatag
tgttttattaactggaagggtaatttaatacatatcatagtcttctgcct
cagttaccttttccttcacttaagcacagccatattactttccaccaata
aatcaaaaaatcacagaacaggattcaaccagggatgtggctggttcatt
ttgtgtaggtcctaagtattgtgtaacttagcaatgtctcgttcagaaaa
gctgtcagtaatttttgtgatgcagatattattgtagcccatttatctca
atagttgcagagttagagactgagaaaataatacggaagaa

gaattcctaacctactcatcttgtgctgtgaaatgaaggatagctctctg
tttcctagttctaggcaactctgtgatttatgaagtactgtttctaatca
actttactaatttccctgtgaaatatgttcatctttacattcctaattcc
attctcattattacaacttaacaagtctaatctttaccttagtccaaaag
atttttgaagttctatgtccttcctcactggccagaataaaccaaccacc
aaacccagacactattgcatatgccaggacgctgatatagctatctcttg
agaggctatgccagtgcctggcaaatacagaagtggatgctcacagtcat
ctattggatggaatacaggcccctaatgaaggagctagagaaggtaacca
aggagttaaagggctctgcaaccctgtaggaggatcaacagtatgaacta
accagtacacaccagaactgtgtctctagttgcatatgtaggagaagatg
gcctagtcggccatcaatgggaggaaaggcccttggtcttgagaagatca
tatgccccactacagaggaatgctggggccaggaagcgggagtgagttgg
gttggggagcaggcagggagggggagggcttaaggggctttccggatagc
attttgacttgtaaatgaagaaaatatctaataataaaataaaaataaaa
actccctaacatcctgaaattttccaatttgatattttgaacaaagcaaa
attaatgcaaagaattgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38602853_38603946
seq2: B6Ng01-315K20.b_49_1139

seq1  GAATTCAGAGAAGGATAACAGGAGGGACTCAATGGGAGACATTTAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAGGATAACAGGAGGGACTCAATGGGAGACATTTAAAACA  50

seq1  TCCAGCATGGGGTGGTATTGATGGAAGAGAGGAATTCAGAGAAGGATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCATGGGGTGGTATTGATGGAAGAGAGGAATTCAGAGAAGGATAAC  100

seq1  AAGGAGGGACTCAATGGAAAACATTTAAGACATCCAGCAAGGGATGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGACTCAATGGAAAACATTTAAGACATCCAGCAAGGGATGGTAT  150

seq1  GGTTCTATTATGTAATGGTACAATTGAGAACTACTGGAACTGTTTGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATTATGTAATGGTACAATTGAGAACTACTGGAACTGTTTGTAAT  200

seq1  GATAAGCATTTCATAATGTATCATTAAATATTTCCACCTCCCATTTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCATTTCATAATGTATCATTAAATATTTCCACCTCCCATTTACCT  250

seq1  TATTCTTTATCATTTCTAATGTATACTTGAACAGTTAATTGTACATTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTATCATTTCTAATGTATACTTGAACAGTTAATTGTACATTGAT  300

seq1  GGGTATTTTCTGTTTTATAAGATAATTTATTTCTGAACCCTATTGAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTTCTGTTTTATAAGATAATTTATTTCTGAACCCTATTGAGAAC  350

seq1  ATCTTGAGGGTAAGGCCAGACAGATATATTTTTGTATTTTTCATATTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGGGTAAGGCCAGACAGATATATTTTTGTATTTTTCATATTGCC  400

seq1  CAAGACATTTTATATGTGATATAGATTAGTGATGGTAATTACTAATGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATTTTATATGTGATATAGATTAGTGATGGTAATTACTAATGCTA  450

seq1  ATCATGCCCTATGGACTGAGCTATCAGTTTTGAATGCATTATTTAACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCCCTATGGACTGAGCTATCAGTTTTGAATGCATTATTTAACTTA  500

seq1  ATCTTTAAAACAAACCCATGCAGAAAACTTAATTTTTAGTTTCTAGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAAACAAACCCATGCAGAAAACTTAATTTTTAGTTTCTAGATAG  550

seq1  AAAAAAAAATTAATTTCCCCAAGCCAAGTGACTCCTTCAGAATGTATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTAATTTCCCCAAGCCAAGTGACTCCTTCAGAATGTATTTA  600

seq1  TTTCCAAATATTATTGCAGAAATAAAACCTCAAATCTGGTTGAGAACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAATATTATTGCAGAAATAAAACCTCAAATCTGGTTGAGAACTGT  650

seq1  ATTGGGTAAGGTTTTGCAGAATTTATATGAATAGTGTTTTCATGATACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTAAGGTTTTGCAGAATTTATATGAATAGTGTTTTCATGATACTG  700

seq1  CAGCCTTTTGGCCTCTTTGCTGTGGTTAATCATGGTTCTTTTCATTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTTGGCCTCTTTGCTGTGGTTAATCATGGTTCTTTTCATTGTAT  750

seq1  CAGAATCGCACTTTGGTCTTCTAGCGTCGTTTGGAGC-CATTTGTGATAG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAATCGCACTTTGGTCTTCTAGCGTCGTTTGGAGCTCATTTGTGATAG  800

seq1  TGTTTTATTAACTGGAAGGGTAATTTAATACATATCATAGTCTTCTGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTAACTGGAAGGGTAATTTAATACATATCATAGTCTTCTGCCT  850

seq1  CAGTTACC-TTTCCTTCACTTAAGCACAGCCATATTAC-TTCCACCAATA  897
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  CAGTTACCTTTTCCTTCACTTAAGCACAGCCATATTACTTTCCACCAATA  900

seq1  AATCAAAAAATCACAGAACAAGA-TCAACAAGGGATGTGGCTGGTTCATT  946
      |||||||||||||||||||| || ||||| ||||||||||||||||||||
seq2  AATCAAAAAATCACAGAACAGGATTCAACCAGGGATGTGGCTGGTTCATT  950

seq1  TTGTGTAGGTCCTAAGTA-TGTGTAACTTAGCAATGTCCCG-TCAGAAAA  994
      |||||||||||||||||| ||||||||||||||||||| || ||||||||
seq2  TTGTGTAGGTCCTAAGTATTGTGTAACTTAGCAATGTCTCGTTCAGAAAA  1000

seq1  GCTGTCAAGTAATTTTTGTGATGCAGATTATTATTGTAGCCCAATTATCT  1044
      |||||| |||||||||||||||||||| ||||||||||||||| ||||||
seq2  GCTGTC-AGTAATTTTTGTGATGCAGA-TATTATTGTAGCCCATTTATCT  1048

seq1  CAATAGTTGCAGAAGTTAGAGACTGAGGAAAATAATAGGGAGAGGAAGAA  1094
      |||||||||||| ||||||||||||| ||||||||||      |||||||
seq2  CAATAGTTGCAG-AGTTAGAGACTGA-GAAAATAATA-----CGGAAGAA  1091


seq1: chr11_38671556_38672325
seq2: B6Ng01-315K20.g_64_833 (reverse)

seq1  CAACAATTCTTAGCATTATTTTTGCTATGTTCAAAATATCAAATTGTAAA  50
      ||||||||||| |||||| ||||||| ||||||||||||||||||| |||
seq2  CAACAATTCTTTGCATTAATTTTGCTTTGTTCAAAATATCAAATTGGAAA  50

seq1  ATTTCAGGATGTTAGGAAGTTTTTATTTTTATTTTTATTATTAGATATTT  100
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  ATTTCAGGATGTTAGGGAGTTTTTATTTTTA-TTTTATTATTAGATATTT  99

seq1  TCTTCATTTACATGTC-AAATGCTATCCTGAAAGCCCCCTAAGCCCTCCC  149
      |||||||||||| ||| ||||||||||| ||||||||| |||||||||||
seq2  TCTTCATTTACAAGTCAAAATGCTATCCGGAAAGCCCCTTAAGCCCTCCC  149

seq1  CCTCCCTGCCTGCTCCCCAACCCAACTCACTCCCGCTTCCTGGCCCCAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGCCTGCTCCCCAACCCAACTCACTCCCGCTTCCTGGCCCCAGC  199

seq1  ATTCCTCTGTAGTGGGGCATATGATCTTCTCAAGACCAAGGGCCTTTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTGTAGTGGGGCATATGATCTTCTCAAGACCAAGGGCCTTTCCT  249

seq1  CCCATTGATGGCCGACTAGGCCATCTTCTCCTACATATGCAACTAGAGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGATGGCCGACTAGGCCATCTTCTCCTACATATGCAACTAGAGAC  299

seq1  ACAGTTCTGGTGTGTACTGGTTAGTTCATACTGTTGATCCTCCTACAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTGGTGTGTACTGGTTAGTTCATACTGTTGATCCTCCTACAGGG  349

seq1  TTGCAGAGCCCTTTAACTCCTTGGTTACCTTCTCTAGCTCCTTCATTAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGCCCTTTAACTCCTTGGTTACCTTCTCTAGCTCCTTCATTAGG  399

seq1  GGCCTGTATTCCATCCAATAGATGACTGTGAGCATCCACTTCTGTATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTATTCCATCCAATAGATGACTGTGAGCATCCACTTCTGTATTTG  449

seq1  CCAGGCACTGGCATAGCCTCTCAAGAGATAGCTATATCAGCGTCCTGGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACTGGCATAGCCTCTCAAGAGATAGCTATATCAGCGTCCTGGCA  499

seq1  TATGCAATAGTGTCTGGGTTTGGTGGTTGGTTTATTCTGGCCAGTGAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATAGTGTCTGGGTTTGGTGGTTGGTTTATTCTGGCCAGTGAGGA  549

seq1  AGGACATAGAACTTCAAAAATCTTTTGGACTAAGGTAAAGATTAGACTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATAGAACTTCAAAAATCTTTTGGACTAAGGTAAAGATTAGACTTG  599

seq1  TTAAGTTGTAATAATGAGAATGGAATTAGGAATGTAAAGATGAACATATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTGTAATAATGAGAATGGAATTAGGAATGTAAAGATGAACATATT  649

seq1  TCACAGGGAAATTAGTAAAGTTGATTAGAAACAGTACTTCATAAATCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGAAATTAGTAAAGTTGATTAGAAACAGTACTTCATAAATCACA  699

seq1  GAGTTGCCTAGAACTAGGAAACAGAGAGCTATCCTTCATTTCACAGCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCCTAGAACTAGGAAACAGAGAGCTATCCTTCATTTCACAGCACA  749

seq1  AGATGAGTAGGTTAGGAATTC  770
      |||||||||||||||||||||
seq2  AGATGAGTAGGTTAGGAATTC  770


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