BAC Information

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BAC

Clone NameB6Ng01-316L10
Chromosome11 (Build37)
Map Location 100,419,306 - 100,634,390
singlet/doubletdoublet
Overlap geneTtc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc
Upstream geneKrtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly
Downstream geneStat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316L10.bB6Ng01-316L10.g
ACCGA107040GA107041
length1,132101
definitionB6Ng01-316L10.b B6Ng01-316L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,419,306 - 100,420,447)(100,634,290 - 100,634,390)
sequence
gaattctacgcacccctccctcattctttctgagacagggtttctctgta
tagccctggccctggctgtcctggaactcacttttgtagaccaggctggc
cttgaactcagaaatctgcctgcctctgcctcctgagtgctgggattaaa
ggcatgcgtcaccaccgctcggctccctccctcatttttgtcagccactt
agagactagccagtgacttgttcaggaggtttctaggtacgcattccagt
gctcatccattttttgggtggatggagatttgatttatgtgccttcctgt
cactggtagtttgctgttgttttcctcaagataggatttcaagtagccca
ggttggctcgaattcgctgtgtagctgagggtgattgtgaactccttggc
cttctggctctacctccctaataggtgtgcaccacatgccaggtgtgcac
ccaggcgatcgaaaactccttaacttcctggctgttggaattgtagatgt
gcaccttcatgccaggtttgtgcagtggttgggggaccaaacccagggcc
ttgtgtgtctccacagtccttgcattatgaacgtttctgatggtagagct
ggaacctaggcctcaggcatgctcggcaagtgctctaacactgatccaca
tattcagccttcattttctgtcttttgtttttaaacaagatctcactaag
tagcgctggcttgcctggaactcactgtatagaccaatctggcttcaaac
tcaccaaaatccatctgcatctgcctctggagttggaggattaaaggcat
aagggtgtataccaccactcttggcacctcccttattaatattatgaata
aattaagaagccacaggatttacctgtcacaccacaggagattactcact
ctcgctttttaactttttaatagtgtcaggaatccaacccagggactcca
gtacgctaggcaggctctaccactgggcatccgccctaaccccaggggag
ccctctctgcaggtaaactatctgaggcagtccaatgaggcagctattga
aaccagctgaagatcccacagagacctgccagggacactgcagaagaggg
aatgcctggacaggagctgactggcatgagga
aaagtcagtattagctatctatcaagttcaaagtcatcctgaactaacac
catgattcaaaaaaggggggaggggggcgggcaggaagggggttaggagg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100419306_100420447
seq2: B6Ng01-316L10.b_45_1176

seq1  GAATTCTACGCACCCCTCCCTCATTCTTTCTGAGACAGGGTTTCTCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACGCACCCCTCCCTCATTCTTTCTGAGACAGGGTTTCTCTGTA  50

seq1  TAGCCCTGGCCCTGGCTGTCCTGGAACTCACTTTTGTAGACCAGGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCCCTGGCTGTCCTGGAACTCACTTTTGTAGACCAGGCTGGC  100

seq1  CTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAA  150

seq1  GGCATGCGTCACCACCGCTCGGCTCCCTCCCTCATTTTTGTCAGCCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCGTCACCACCGCTCGGCTCCCTCCCTCATTTTTGTCAGCCACTT  200

seq1  AGAGACTAGCCAGTGACTTGTTCAGGAGGTTTCTAGGTACGCATTCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTAGCCAGTGACTTGTTCAGGAGGTTTCTAGGTACGCATTCCAGT  250

seq1  GCTCATCCATTTTTTGGGTGGATGGAGATTTGATTTATGTGCCTTCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCCATTTTTTGGGTGGATGGAGATTTGATTTATGTGCCTTCCTGT  300

seq1  CACTGGTAGTTTGCTGTTGTTTTCCTCAAGATAGGATTTCAAGTAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTAGTTTGCTGTTGTTTTCCTCAAGATAGGATTTCAAGTAGCCCA  350

seq1  GGTTGGCTCGAATTCGCTGTGTAGCTGAGGGTGATTGTGAACTCCTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTCGAATTCGCTGTGTAGCTGAGGGTGATTGTGAACTCCTTGGC  400

seq1  CTTCTGGCTCTACCTCCCTAATAGGTGTGCACCACATGCCAGGTGTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTCTACCTCCCTAATAGGTGTGCACCACATGCCAGGTGTGCAC  450

seq1  CCAGGCGATCGAAAACTCCTTAACTTCCTGGCTGTTGGAATTGTAGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCGATCGAAAACTCCTTAACTTCCTGGCTGTTGGAATTGTAGATGT  500

seq1  GCACCTTCATGCCAGGTTTGTGCAGTGGTTGGGGGACCAAACCCAGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTCATGCCAGGTTTGTGCAGTGGTTGGGGGACCAAACCCAGGGCC  550

seq1  TTGTGTGTCTCCACAGTCCTTGCATTATGAACGTTTCTGATGGTAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTCTCCACAGTCCTTGCATTATGAACGTTTCTGATGGTAGAGCT  600

seq1  GGAACCTAGGCCTCAGGCATGCTCGGCAAGTGCTCTAACACTGATCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTAGGCCTCAGGCATGCTCGGCAAGTGCTCTAACACTGATCCACA  650

seq1  TATTCAGCCTTCATTTTCTGTCTTTTGTTTTTAAACAAGATCTCACTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGCCTTCATTTTCTGTCTTTTGTTTTTAAACAAGATCTCACTAAG  700

seq1  TAGCGCTGGCTTGCCTGGAACTCACTGTATAGACCAATCTGGCTTCAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCTGGCTTGCCTGGAACTCACTGTATAGACCAATCTGGCTTCAAAC  750

seq1  TCACCAAAATCCATCTGCATCTGCCTCTGGAGTTGGAGGATTAAAGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAAATCCATCTGCATCTGCCTCTGGAGTTGGAGGATTAAAGGCAT  800

seq1  AAGGGTGTATACCACCACTCTTGGCACCTCCCTTATTAATATTATGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTATACCACCACTCTTGGCACCTCCCTTATTAATATTATGAATA  850

seq1  AATTAAGAAGCCACAGGATTTACCTGTCACACCACAGGAGATTACTCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAAGCCACAGGATTTACCTGTCACACCACAGGAGATTACTCACT  900

seq1  CTCGCTTTTTAACTTTTTAATAGTGTCAGGAATCCAACCCAGGGACTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTTTTTAACTTTTTAATAGTGTCAGGAATCCAACCCAGGGACTCCA  950

seq1  GTACGCTAGGCAGGCTCTACCACTGGGCCATCCGCCCTAACCCCAGGGGA  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTACGCTAGGCAGGCTCTACCACTGGG-CATCCGCCCTAACCCCAGGGGA  999

seq1  GCCCTCTCTGCAAGGGAAAACCTATCTGAGGCAG-CCCATGAGGGCAGCT  1049
      ||||||||||||  || ||| ||||||||||||| || |||| |||||||
seq2  GCCCTCTCTGCA--GGTAAA-CTATCTGAGGCAGTCCAATGA-GGCAGCT  1045

seq1  ATTGAAAACCAAGGCTGAGGA-CCCACAGAGACACAGGCAGGGACACTGC  1098
      |||| ||||||  ||||| || ||||||||||| | | ||||||||||||
seq2  ATTG-AAACCA--GCTGAAGATCCCACAGAGAC-CTGCCAGGGACACTGC  1091

seq1  CAGAGAGGGGATG-CTGGACAGGAGGCTTGGACTGGGCATGAGGA  1142
         |||||| ||| |||||||||| |||  |||| ||||||||||
seq2  AGAAGAGGGAATGCCTGGACAGGA-GCT--GACT-GGCATGAGGA  1132

seq1: chr11_100634290_100634390
seq2: B6Ng01-316L10.g_70_170 (reverse)

seq1  TCCTCCTAACCCCCTTCCTGCCCGCCCCCCTCCCCCCTTTTTTGAATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTAACCCCCTTCCTGCCCGCCCCCCTCCCCCCTTTTTTGAATCAT  50

seq1  GGTGTTAGTTCAGGATGACTTTGAACTTGATAGATAGCTAATACTGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAGTTCAGGATGACTTTGAACTTGATAGATAGCTAATACTGACTT  100

seq1  T  101
      |
seq2  T  101