BAC Information

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BAC

Clone NameB6Ng01-317A10
Chromosome11 (Build37)
Map Location 25,672,910 - 25,804,996
singlet/doubletdoublet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317A10.bB6Ng01-317A10.g
ACCGA107272GA107273
length1,110555
definitionB6Ng01-317A10.b B6Ng01-317A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,803,868 - 25,804,996)(25,672,910 - 25,673,470)
sequence
gaattcttcaacatgtcttaataattgtgtttgagtaatgttttacattt
ataggagttttaaaaaggcaggtgcaatatgacatatcagaagaagcaaa
ttaaactcttgtaaagcacagctgtaatgctaaaaatgtgtatttgtaat
ttaaatatgtgacaccatcacactgtaaaatcagttcataattagaaaac
atctgttttttccaatatgatgcctaaaagtgtatttaaataatttaaaa
tgcaataagaaagagagagtcaaggaacaataagttactcatggacattt
catttctctggtttagtgccctgtatgaaatcttgaaggaacctgtcatt
tgaagctactttttgcataaagcataaatatcactggaaaaatacatatg
ccaagcacatatgctttctgaccttagtgtgtcagtcaaaataaataaat
aaataaaaccaggttgcgtaggttgtggtgttaacaaggatttatgcact
gctatttcttccccaccttctttttaaaaaatattttaatcaaaagacac
tgaagcaaatgtatgttgatggttttcacaggaaatttaagtgaatgtgt
tgcaaatacagagggttgttgagttgtatgaattctggaaatacacttga
gccaggtaaaatattgagttaaaacttatcaggatcaattttagtttagc
taataaagtttgaataaaaccacaatttctcaaatgaagttaacatggta
gattagccacacatctgtcatcaatgttcacataggaaggtatttatata
tgtgtgatgaaaactcaaatgagtatttttattctaactacagtgtgcgt
gctgaacattgtttcagatatggacaaaccaaatgtgacttggaaggtct
ggttttgacattaccagcctatgtctggaaaggttatggaccaataaata
aataaataagtatgataaataaataaataataaatataaacagaacagat
aaagcacttgcagtagcagtcacagatactggcagctttctcatgagctt
agtcaagatgatgtgagcagaatagtctagcgatgcagctgcctgtgagg
ggcagagcat

cttcttttttttactttctgcaattttgtgaattctaccctggacaaaaa
aacaaaagaataataaaacaacaacaacaacaacaaaatcataatatgat
tttgttcagtgttatggaaatgtgtgcagcctaaaagaatatgcaccaaa
tacagattagaaatgcccatgtcaattccactatcatttattcttctggt
ctcaaatttttttttctgaaaatagacaggttataaatcattaaaaaatt
aaactataaactcttggctttaattcagttatatatcagagagggttatg
tgtgtggtaaattagaaagctggtaaagtaagactgaagtgggtggcatg
ggctagggaggaggctatgtgccggaaagagtcagggagagcaagagaca
taggagtagacagtttggtgggttgtttaaaagttttaatttcatattta
taaatataaattttgaaaacaacacatagttcaatttttctcaagcccta
agatttctgatctaatgaaaactgtgaggcaagatgttctgggggtgggg
ggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25803868_25804996
seq2: B6Ng01-317A10.b_48_1157 (reverse)

seq1  ATGCTTCCTGCTCCCTCACAGCCAGGCTGCATCGCTAGACTTAATCTGCT  50
      |||||  |||| ||||||||| || ||||||||||||||| || ||||||
seq2  ATGCT--CTGC-CCCTCACAGGCA-GCTGCATCGCTAGAC-TATTCTGCT  45

seq1  CACATCATCTTGGACTAAGCTTCATGAGAAAGCCTTGGCCAGTATCTGTG  100
      ||||||||||| |||||||| ||||||||||||    |||||||||||||
seq2  CACATCATCTT-GACTAAGC-TCATGAGAAAGC---TGCCAGTATCTGTG  90

seq1  ACTGCTACTGCAAGTGCTTTATTCTGTTCTTGTTTTATTATTTATTTATT  150
      ||||||||||||||||||||| ||||||| |||||   |||||| |||||
seq2  ACTGCTACTGCAAGTGCTTTA-TCTGTTC-TGTTT--ATATTTA-TTATT  135

seq1  TATTTATTTATTCATACTTATTTATTTATTTATTTGGTCCATTAACCTTT  200
      |||||||||| ||||||||||||||||||||| |||||||| ||||||||
seq2  TATTTATTTA-TCATACTTATTTATTTATTTA-TTGGTCCA-TAACCTTT  182

seq1  CCAGACATAGGCTGGTAATGTCAAAACCAGAACCTTCCAAGTCACATTTG  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGACATAGGCTGGTAATGTCAAAACCAG-ACCTTCCAAGTCACATTTG  231

seq1  GTTTGTCCATATCTGAAACAATGTTCAGCACGCACACTGTAGTTAGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCCATATCTGAAACAATGTTCAGCACGCACACTGTAGTTAGAATA  281

seq1  AAAATACTCATTTGAGTTTTCATCACACATATATAAATACCTTCCTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTCATTTGAGTTTTCATCACACATATATAAATACCTTCCTATGT  331

seq1  GAACATTGATGACAGATGTGTGGCTAATCTACCATGTTAACTTCATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTGATGACAGATGTGTGGCTAATCTACCATGTTAACTTCATTTGA  381

seq1  GAAATTGTGGTTTTATTCAAACTTTATTAGCTAAACTAAAATTGATCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTGGTTTTATTCAAACTTTATTAGCTAAACTAAAATTGATCCTG  431

seq1  ATAAGTTTTAACTCAATATTTTACCTGGCTCAAGTGTATTTCCAGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTTAACTCAATATTTTACCTGGCTCAAGTGTATTTCCAGAATTC  481

seq1  ATACAACTCAACAACCCTCTGTATTTGCAACACATTCACTTAAATTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACTCAACAACCCTCTGTATTTGCAACACATTCACTTAAATTTCCT  531

seq1  GTGAAAACCATCAACATACATTTGCTTCAGTGTCTTTTGATTAAAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAACCATCAACATACATTTGCTTCAGTGTCTTTTGATTAAAATATT  581

seq1  TTTTAAAAAGAAGGTGGGGAAGAAATAGCAGTGCATAAATCCTTGTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGAAGGTGGGGAAGAAATAGCAGTGCATAAATCCTTGTTAAC  631

seq1  ACCACAACCTACGCAACCTGGTTTTATTTATTTATTTATTTTGACTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAACCTACGCAACCTGGTTTTATTTATTTATTTATTTTGACTGACA  681

seq1  CACTAAGGTCAGAAAGCATATGTGCTTGGCATATGTATTTTTCCAGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGTCAGAAAGCATATGTGCTTGGCATATGTATTTTTCCAGTGAT  731

seq1  ATTTATGCTTTATGCAAAAAGTAGCTTCAAATGACAGGTTCCTTCAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCTTTATGCAAAAAGTAGCTTCAAATGACAGGTTCCTTCAAGAT  781

seq1  TTCATACAGGGCACTAAACCAGAGAAATGAAATGTCCATGAGTAACTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGGGCACTAAACCAGAGAAATGAAATGTCCATGAGTAACTTAT  831

seq1  TGTTCCTTGACTCTCTCTTTCTTATTGCATTTTAAATTATTTAAATACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTGACTCTCTCTTTCTTATTGCATTTTAAATTATTTAAATACAC  881

seq1  TTTTAGGCATCATATTGGAAAAAACAGATGTTTTCTAATTATGAACTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCATCATATTGGAAAAAACAGATGTTTTCTAATTATGAACTGAT  931

seq1  TTTACAGTGTGATGGTGTCACATATTTAAATTACAAATACACATTTTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTGTGATGGTGTCACATATTTAAATTACAAATACACATTTTTAG  981

seq1  CATTACAGCTGTGCTTTACAAGAGTTTAATTTGCTTCTTCTGATATGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGCTGTGCTTTACAAGAGTTTAATTTGCTTCTTCTGATATGTCA  1031

seq1  TATTGCACCTGCCTTTTTAAAACTCCTATAAATGTAAAACATTACTCAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCACCTGCCTTTTTAAAACTCCTATAAATGTAAAACATTACTCAAA  1081

seq1  CACAATTATTAAGACATGTTGAAGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  CACAATTATTAAGACATGTTGAAGAATTC  1110


seq1: chr11_25672910_25673470
seq2: B6Ng01-317A10.g_66_626

seq1  GAATTCCTTCTTTTTTTTACTTTCTGCAATTTTGTGAATTCTACCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTTTTTTTACTTTCTGCAATTTTGTGAATTCTACCCTGGA  50

seq1  CAAAAAAACAAAAGAATAATAAAACAACAACAACAACAACAAAATCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACAAAAGAATAATAAAACAACAACAACAACAACAAAATCATAA  100

seq1  TATGATTTTGTTCAGTGTTATGGAAATGTGTGCAGCCTAAAAGAATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTTGTTCAGTGTTATGGAAATGTGTGCAGCCTAAAAGAATATGC  150

seq1  ACCAAATACAGATTAGAAATGCCCATGTCAATTCCACTATCATTTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATACAGATTAGAAATGCCCATGTCAATTCCACTATCATTTATTCT  200

seq1  TCTGGTCTCAAATTTTTTTTTCTGAAAATAGACAGGTTATAAATCATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTCAAATTTTTTTTTCTGAAAATAGACAGGTTATAAATCATTAA  250

seq1  AAAATTAAACTATAAACTCTTGGCTTTAATTCAGTTATATATCAGAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAACTATAAACTCTTGGCTTTAATTCAGTTATATATCAGAGAGG  300

seq1  GTTATGTGTGTGGTAAATTAGAAAGCTGGTAAAGTAAGACTGAAGTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTGTGTGGTAAATTAGAAAGCTGGTAAAGTAAGACTGAAGTGGGT  350

seq1  GGCATGGGCTAGGGAGGAGGCTATGTGCCGGAAAGAGTCAGGGAGAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGCTAGGGAGGAGGCTATGTGCCGGAAAGAGTCAGGGAGAGCAA  400

seq1  GAGACATAGGAGTAGACAGTTTGGTGGGTTGTTTAAAAGTTTTAATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAGGAGTAGACAGTTTGGTGGGTTGTTTAAAAGTTTTAATTTCA  450

seq1  TATTTATAAATATAAATTTTGAAAACAACACATAGTTCAATTTTTCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAAATATAAATTTTGAAAACAACACATAGTTCAATTTTTCTCAA  500

seq1  GCCCTAAGATTTCTGATCTAATGAAAACTGTGAGGCAAGATGTTCTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAGATTTCTGATCTAATGAAAACTGTGAGGCAAGATGTTCTGGGG  550

seq1  GTGGGGGGTGG  561
      |||||||||||
seq2  GTGGGGGGTGG  561


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