BAC Information

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BAC

Clone NameB6Ng01-317F10
Chromosome11 (Build37)
Map Location 26,019,912 - 26,021,122
singlet/doubletsinglet
Overlap gene5730522E02Rik
Upstream geneLOC100042328
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317F10.bB6Ng01-317F10.g
ACCGA107509GA107510
length1,1891,195
definitionB6Ng01-317F10.b B6Ng01-317F10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgcatgctttaataactatttagcaatactttagatttttcac
agtggagataaacaaagggaaatttatttaacttctctttcctaagtaga
ctttgtgttttgctcagtttaggtgcactttggtgggaatcaccttctct
ggcctttcatggatatcacagtttcccccaaacacttacaggctgtgcaa
tgctgctataatttacagtgtttcctatggaaactcttctgctctcttgg
aggactttggaagtcatagggaagcctttaacaggacacaaaggcaagtc
agccttgcttttgtcaatgggaagcaagtgtctggcgcacacagttaact
tgtgggtaatccttgtccaataaaaagtggaaatgcatacttttgaaaat
cactatgattcttctagtatgaattgaacttcacaaattatacaacagat
cttatactctccaaatggaaataagacgttgaaggtacaaaatggctcct
aacacaacaaaaacctagctcttaaatgtacagactttctgttgtctcta
caagctgtctttctatgggcaaatcaggcttccttcactgatatctctaa
aaattgaaataatggtaagaacttttcactgtttacatagtttaaaatta
aaaatggcaaataaatcattcatatattaagaacgattaccccagcatgt
aataaggtaattctgcattaccttagatatattacccacaatgcttttca
gcacagcagctaattaccagcagaaaggtcatacaaaaaaaaaaataatg
tgattagaagaggttgagaaaaaaatagccacatatttggacatagacca
aattccctttttgccactgtaactgaaaaccatttcttcaatatttaatg
aaacgcttatgctacagcacctggtcacattgtcagcctaccctaaccac
tgcctcccccgtgggccgttactgcagccatctgaaaggggaaactgtca
tcaagacataatgccagtctttagatctacagctacaaaacagcaggaga
cagagttttgcttgatcttggaaatgctggggccaaatgctgtctacatc
agagaactgttacagttagcagtactgtgtagtcaagctttctggaacca
gcttgctgccaattgccttggcctctctcccttgcagaa

gaattctcacctgaggaatacgaatggcagagaagcacctgaaaaaaatg
ttcaacatccataatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaacagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgagcatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttttcag
aaaattggacatagtacttccggaggatcctgcaatatatctcctgggca
tatatccagaagatgttccatctggtaaggacacatgctccactatgttc
attgcagccttatttataatagccagaagctggaaagaacccagatgccc
ctcaacagaggaatggatacagaaaatgtggtacatttacacaatggagt
actactcagctattaaaaagaatgaatttatgaaattcctaggtaaatgg
atggacgtggagggcatcatcctgagtgaggtaacccaatcacaaaggaa
ctcacacaatatgtactcagtgataagtggatattagcccagaaacttag
gatacccaagatataagatacaatttgctaaatgcatgaaactcaagaag
aacaaagaccaaagtgtggacactttgccccttcttagaattcggaacaa
aacacccaatgaaaggagttacagagacaaaggttggagctgtgacgaaa
aggatggaccatctagagactgccatactcagggatccatcccataatca
gcttccaaatgctgacaccgttgcatacactagcaagattttgctgaaag
gacccagatagagctgtctcttgtgagactatgccggggcttagcaaaca
cagaagtggatgctcacagtcagctattggatggatcacggggccccctt
tggaggagctagaagaaagtactcagagctaaagggatctgcaccctata
ggtagaacaacattatgaactaccagtaccccggagcttgtgtctctagc
tgcatatgtagcatagatggcctagtcgcatcatgaaagagagcccattg
actggtaaccttatatggccagtacaggaaacccaggtcaatgttgcaat
ggttgtacggagatcctggggggatagttatctgccaatcatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26019912_26021122
seq2: B6Ng01-317F10.b_44_1232

seq1  GAATTCTTGCATGCTTTAATAACTATTTAGCAATACTTTAGATTTTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCATGCTTTAATAACTATTTAGCAATACTTTAGATTTTTCAC  50

seq1  AGTGGAGATAAACAAAGGGAAATTTATTTAACTTCTCTTTCCTAAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGATAAACAAAGGGAAATTTATTTAACTTCTCTTTCCTAAGTAGA  100

seq1  CTTTGTGTTTTGCTCAGTTTAGGTGCACTTTGGTGGGAATCACCTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTTTTGCTCAGTTTAGGTGCACTTTGGTGGGAATCACCTTCTCT  150

seq1  GGCCTTTCATGGATATCACAGTTTCCCCCAAACACTTACAGGCTGTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCATGGATATCACAGTTTCCCCCAAACACTTACAGGCTGTGCAA  200

seq1  TGCTGCTATAATTTACAGTGTTTCCTATGGAAACTCTTCTGCTCTCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTATAATTTACAGTGTTTCCTATGGAAACTCTTCTGCTCTCTTGG  250

seq1  AGGACTTTGGAAGTCATAGGGAAGCCTTTAACAGGACACAAAGGCAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTGGAAGTCATAGGGAAGCCTTTAACAGGACACAAAGGCAAGTC  300

seq1  AGCCTTGCTTTTGTCAATGGGAAGCAAGTGTCTGGCGCACACAGTTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCTTTTGTCAATGGGAAGCAAGTGTCTGGCGCACACAGTTAACT  350

seq1  TGTGGGTAATCCTTGTCCAATAAAAAGTGGAAATGCATACTTTTGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTAATCCTTGTCCAATAAAAAGTGGAAATGCATACTTTTGAAAAT  400

seq1  CACTATGATTCTTCTAGTATGAATTGAACTTCACAAATTATACAACAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGATTCTTCTAGTATGAATTGAACTTCACAAATTATACAACAGAT  450

seq1  CTTATACTCTCCAAATGGAAATAAGACGTTGAAGGTACAAAATGGCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTCTCCAAATGGAAATAAGACGTTGAAGGTACAAAATGGCTCCT  500

seq1  AACACAACAAAAACCTAGCTCTTAAATGTACAGACTTTCTGTTGTCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACAAAAACCTAGCTCTTAAATGTACAGACTTTCTGTTGTCTCTA  550

seq1  CAAGCTGTCTTTCTATGGGCAAATCAGGCTTCCTTCACTGATATCTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTCTTTCTATGGGCAAATCAGGCTTCCTTCACTGATATCTCTAA  600

seq1  AAATTGAAATAATGGTAAGAACTTTTCACTGTTTACATAGTTTAAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAATAATGGTAAGAACTTTTCACTGTTTACATAGTTTAAAATTA  650

seq1  AAAATGGCAAATAAATCATTCATATATTAAGAACGATTACCCCAGCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCAAATAAATCATTCATATATTAAGAACGATTACCCCAGCATGT  700

seq1  AATAAGGTAATTCTGCATTACCTTAGATATATTACCCACAATGCTTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGTAATTCTGCATTACCTTAGATATATTACCCACAATGCTTTTCA  750

seq1  GCACAGCAGCTAATTACCAGCAGAAAGGTCATAC-AAAAAAAAAATAATG  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCACAGCAGCTAATTACCAGCAGAAAGGTCATACAAAAAAAAAAATAATG  800

seq1  TGATTAGAAGAGGTTGAGAAAAAAATAGCCACATATTTGGACATAGACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGAAGAGGTTGAGAAAAAAATAGCCACATATTTGGACATAGACCA  850

seq1  AATTCCCTTTTTGCCACTGTAACTGAAAACCATTTCTTCAATATTTAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTTTTTGCCACTGTAACTGAAAACCATTTCTTCAATATTTAATG  900

seq1  AAACGCTTATGCTACAGCACCTGGTCACATTGTCAGCCTACCCTAACCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTTATGCTACAGCACCTGGTCACATTGTCAGCCTACCCTAACCAC  950

seq1  TGCCTCCCCCGTGGGCCGTTACTGCAGCCATCTGAAAGGGGGAAACTGTT  999
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TGCCTCCCCCGTGGGCCGTTACTGCAGCCATCTGAAA-GGGGAAACTG-T  998

seq1  CATCCAAGACAATAATGCCAGTCTTTAAGAATCTACAGCTACAAAACAGC  1049
      ||| |||||| ||||||||||||||||   ||||||||||||||||||||
seq2  CAT-CAAGAC-ATAATGCCAGTCTTTA--GATCTACAGCTACAAAACAGC  1044

seq1  AGGAGACAGAGTTTTGGCTTTGATCTTGGGAAAAATGGCTGGGGGCAAAA  1099
      ||||||||||||||||   ||||||||||   |||| ||| ||||| |||
seq2  AGGAGACAGAGTTTTG--CTTGATCTTGG---AAAT-GCT-GGGGCCAAA  1087

seq1  TGCTGTTTCCTACCATCAGAG-ACTG-TACAGTTAGCAGTAACTGTGTAA  1147
      ||||||   ||| |||||||| |||| ||||||||||||| ||||||| |
seq2  TGCTGT---CTA-CATCAGAGAACTGTTACAGTTAGCAGT-ACTGTGT-A  1131

seq1  GTCAAAGCTATTCTGGGGACTCAGCTTGGCTGCCCCACTTTGCTTGCTCT  1197
      ||| ||||| ||||  |||  |||||| ||||  ||| ||  ||||  ||
seq2  GTC-AAGCT-TTCT--GGAACCAGCTT-GCTG--CCAATTGCCTTGGCCT  1174

seq1  CTC-CCCTTGCAGAA  1211
      ||| |||||||||||
seq2  CTCTCCCTTGCAGAA  1189


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